2. d.68.4 YhbY-like IF3-like beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest 1jo0 d1jo0b_ B:5-19,56-72,73-80,81-87 1jo0 d1jo0a_ A:5-19,56-72,73-80,81-87 1ln4 d1ln4a_ A:4-18,55-71,72-79,80-86 1rq8 d1rq8a_ A:3-15,54-70,71-78,79-85 3. c.82.1 ALDH-like binds NAD differently from other NAD(P)-dependent oxidoreductases ! ALDH-like consists of two similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 1ag8 d1ag8b_ B:312-329,346-364,365-369,383-388 1ag8 d1ag8a_ A:312-329,346-364,365-369,383-388 1ag8 d1ag8c_ C:312-329,346-364,365-369,383-388 1ag8 d1ag8d_ D:312-329,346-364,365-369,383-388 1a4z d1a4za_ A:312-329,346-364,365-369,383-388 1euh d1euha_ A:294-311,327-345,346-350,361-366 2euh d2euhc_ C:294-311,327-345,346-350,361-366 1ez0 d1ez0c_ C:300-317,324-342,344-350,357-364 2euh d2euhd_ D:294-311,327-345,346-350,361-366 2euh d2euhb_ B:294-311,327-345,346-350,361-366 1euh d1euhc_ C:294-311,327-345,346-350,361-366 2euh d2euha_ A:294-311,327-345,346-350,361-366 1euh d1euhd_ D:294-311,327-345,346-350,361-366 1qi6 d1qi6c_ C:294-311,327-345,346-350,361-366 1qi6 d1qi6a_ A:294-311,327-345,346-350,361-366 1bxs d1bxsc_ C:312-329,346-364,365-369,382-388 1qi6 d1qi6b_ B:294-311,327-345,346-350,361-366 1qi6 d1qi6d_ D:294-311,327-345,346-350,361-366 1euh d1euhb_ B:294-311,327-345,346-350,361-366 1bxs d1bxsb_ B:312-329,346-364,365-369,382-388 1bxs d1bxsd_ D:312-329,346-364,365-369,382-388 1qi1 d1qi1d_ D:294-311,327-345,346-350,361-366 1bxs d1bxsa_ A:312-329,346-364,365-369,382-388 1qi1 d1qi1b_ B:294-311,327-345,346-350,361-366 1qi1 d1qi1a_ A:294-311,327-345,346-350,361-366 1qi1 d1qi1c_ C:294-311,327-345,346-350,361-366 1nzw d1nzwf_ F:312-330,346-364,365-374,383-388 1wnd d1wndb_ B:290-307,324-342,344-348,362-367 1wnd d1wndd_ D:290-307,324-342,344-348,362-367 1wnb d1wnbd_ D:290-307,324-342,344-348,362-367 1o9j d1o9jc_ C:312-329,346-364,365-374,383-388 1o9j d1o9jb_ B:312-329,346-364,365-374,383-388 1o9j d1o9ja_ A:312-329,346-364,365-374,383-388 1o9j d1o9jd_ D:312-329,346-364,365-374,383-388 1o01 d1o01b_ B:312-329,346-364,365-374,383-388 1o02 d1o02b_ B:312-329,346-364,365-374,383-388 1o02 d1o02h_ H:312-329,346-364,365-374,383-388 1nzz d1nzzb_ B:312-329,346-364,365-374,383-388 1o02 d1o02c_ C:312-329,346-364,365-374,383-388 1o04 d1o04b_ B:312-329,346-364,365-374,383-388 1cw3 d1cw3h_ H:312-329,346-364,365-374,383-388 1nzw d1nzwe_ E:312-329,346-364,365-374,383-388 1o05 d1o05b_ B:312-329,346-364,365-374,383-388 1o02 d1o02e_ E:312-329,346-364,365-374,383-388 1o01 d1o01h_ H:312-329,346-364,365-374,383-388 1nzw d1nzwh_ H:312-329,346-364,365-374,383-388 1o01 d1o01g_ G:312-329,346-364,365-374,383-388 1o02 d1o02d_ D:312-329,346-364,365-374,383-388 1o02 d1o02f_ F:312-329,346-364,365-374,383-388 1nzw d1nzwa_ A:312-329,346-364,365-374,383-388 1nzw d1nzwd_ D:312-329,346-364,365-374,383-388 1nzw d1nzwc_ C:312-329,346-364,365-374,383-388 1cw3 d1cw3f_ F:312-329,346-364,365-374,383-388 1cw3 d1cw3b_ B:312-329,346-364,365-374,383-388 1o02 d1o02a_ A:312-329,346-364,365-374,383-388 1nzz d1nzzh_ H:312-329,346-364,365-374,383-388 1nzw d1nzwb_ B:312-329,346-364,365-374,383-388 2vle d2vlea1 A:312-329,346-364,365-374,383-388 1nzz d1nzzc_ C:312-329,346-364,365-374,383-388 2vle d2vlef1 F:312-329,346-364,365-374,383-388 1o01 d1o01e_ E:312-329,346-364,365-374,383-388 1nzz d1nzzf_ F:312-329,346-364,365-374,383-388 1cw3 d1cw3a_ A:312-329,346-364,365-374,383-388 1o04 d1o04h_ H:312-329,346-364,365-374,383-388 1cw3 d1cw3e_ E:312-329,346-364,365-374,383-388 1o02 d1o02g_ G:312-329,346-364,365-374,383-388 2vle d2vlee1 E:312-329,346-364,365-374,383-388 1o00 d1o00h_ H:312-329,346-364,365-374,383-388 2vle d2vleh1 H:312-329,346-364,365-374,383-388 1o05 d1o05h_ H:312-329,346-364,365-374,383-388 1nzz d1nzze_ E:312-329,346-364,365-374,383-388 1o04 d1o04a_ A:312-329,346-364,365-374,383-388 1nzx d1nzxb_ B:312-329,346-364,365-374,383-388 2vle d2vlec1 C:312-329,346-364,365-374,383-388 1nzz d1nzzd_ D:312-329,346-364,365-374,383-388 2vle d2vleg1 G:312-329,346-364,365-374,383-388 2vle d2vled1 D:312-329,346-364,365-374,383-388 1nzz d1nzza_ A:312-329,346-364,365-374,383-388 1o00 d1o00e_ E:312-329,346-364,365-374,383-388 1o01 d1o01a_ A:312-329,346-364,365-374,383-388 1o01 d1o01c_ C:312-329,346-364,365-374,383-388 1o05 d1o05e_ E:312-329,346-364,365-374,383-388 1o00 d1o00d_ D:312-329,346-364,365-374,383-388 1o04 d1o04d_ D:312-329,346-364,365-374,383-388 1nzw d1nzwg_ G:312-329,346-364,365-374,383-388 2vle d2vleb1 B:312-329,346-364,365-374,383-388 1o01 d1o01d_ D:312-329,346-364,365-374,383-388 1o00 d1o00a_ A:312-329,346-364,365-374,383-388 1cw3 d1cw3c_ C:312-329,346-364,365-374,383-388 1o04 d1o04f_ F:312-329,346-364,365-374,383-388 1nzx d1nzxg_ G:312-329,346-364,365-374,383-388 1nzx d1nzxf_ F:312-329,346-364,365-374,383-388 1o04 d1o04e_ E:312-329,346-364,365-374,383-388 1nzx d1nzxa_ A:312-329,346-364,365-374,383-388 1nzz d1nzzg_ G:312-329,346-364,365-374,383-388 1cw3 d1cw3d_ D:312-329,346-364,365-374,383-388 1o01 d1o01f_ F:312-329,346-364,365-374,383-388 1o00 d1o00b_ B:312-329,346-364,365-374,383-388 1nzx d1nzxd_ D:312-329,346-364,365-374,383-388 1nzx d1nzxc_ C:312-329,346-364,365-374,383-388 1o04 d1o04g_ G:312-329,346-364,365-374,383-388 1cw3 d1cw3g_ G:312-329,346-364,365-374,383-388 1nzx d1nzxh_ H:312-329,346-364,365-374,383-388 1nzx d1nzxe_ E:312-329,346-364,365-374,383-388 1o05 d1o05f_ F:312-329,346-364,365-374,383-388 1o00 d1o00c_ C:312-329,346-364,365-374,383-388 1o00 d1o00f_ F:312-329,346-364,365-374,383-388 1o05 d1o05c_ C:312-329,346-364,365-374,383-388 1o04 d1o04c_ C:312-329,346-364,365-374,383-388 1o05 d1o05g_ G:312-329,346-364,365-374,383-388 1o00 d1o00g_ G:312-329,346-364,365-374,383-388 1o05 d1o05d_ D:312-329,346-364,365-374,383-388 1o05 d1o05a_ A:312-329,346-364,365-374,383-388 1uzb d1uzba_ A:332-349,365-384,383-392,401-406 2eiw d2eiwb1 B:332-349,365-384,383-392,401-406 1uzb d1uzbb_ B:332-349,365-384,383-392,401-406 1a4s d1a4sb_ B:307-324,341-359,360-369,384-389 1a4s d1a4sd_ D:307-324,341-359,360-369,384-389 1bpw d1bpwd_ D:307-324,341-359,360-369,384-389 1bpw d1bpwa_ A:307-324,341-359,360-369,384-389 1bpw d1bpwc_ C:307-324,341-359,360-369,384-389 1bpw d1bpwb_ B:307-324,341-359,360-369,384-389 1a4s d1a4sa_ A:307-324,341-359,360-369,384-389 1a4s d1a4sc_ C:307-324,341-359,360-369,384-389 1ez0 d1ez0a_ A:300-317,324-342,344-352,355-364 1eyy d1eyyd_ D:300-317,324-342,344-352,355-364 1eyy d1eyyc_ C:300-317,324-342,344-352,355-364 2eiw d2eiwa1 A:332-349,365-384,383-392,401-406 1eyy d1eyyb_ B:300-317,324-341,344-352,355-364 1eyy d1eyya_ A:300-317,324-341,344-352,355-364 1ez0 d1ez0d_ D:300-317,324-341,344-352,355-364 1ez0 d1ez0b_ B:300-317,324-341,344-352,355-364 1bi9 d1bi9d_ D:312-329,346-364,365-374,383-388 1bi9 d1bi9b_ B:312-329,346-364,365-374,383-388 1bi9 d1bi9c_ C:312-329,346-364,365-374,383-388 1bi9 d1bi9a_ A:312-329,346-364,365-374,383-388 1wnd d1wnda_ A:290-307,324-342,344-353,362-367 1wnd d1wndc_ C:290-307,324-342,344-353,362-367 1wnb d1wnbb_ B:290-307,324-342,344-353,362-367 1wnb d1wnbc_ C:290-307,324-342,344-353,362-367 1wnb d1wnba_ A:290-307,324-342,344-353,362-367 1uxq d1uxqa_ A:307-324,341-359,360-370,376-381 1uxp d1uxpa_ A:307-324,341-359,360-370,376-381 1uxn d1uxna_ A:307-324,341-359,360-370,376-381 1uxr d1uxra_ A:307-324,341-359,360-370,376-381 1ky8 d1ky8a_ A:307-324,341-359,360-370,376-381 1uxt d1uxta_ A:307-324,341-359,360-370,376-381 1uxu d1uxua_ A:307-324,341-359,360-370,376-381 1uxv d1uxva_ A:307-324,341-359,360-370,376-381 4. d.318.1 SARS receptor-binding domain-like SARS receptor-binding domain-like core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542 3d0g d3d0gf1 F:324-331,390-399,418-426,492-501 3d0g d3d0ge1 E:324-331,390-399,418-426,492-501 2ajf d2ajff1 F:324-331,390-399,418-425,492-501 2ghw d2ghwc1 C:324-331,390-399,417-426,492-503 2dd8 d2dd8s1 S:324-331,390-399,417-426,492-503 7. d.228.1 Replication modulator SeqA, C-terminal DNA-binding domain Replication modulator SeqA, C-terminal DNA-binding domain consists of seven alpha-helices and three-stranded beta-sheet 1lrr d1lrrd_ D:86-103,124-133,135-140,145-150 1lrr d1lrra_ A:86-103,124-133,135-140,145-150 1j3e d1j3ea_ A:21-38,59-68,70-75,80-85 1iu3 d1iu3c_ C:21-38,59-68,70-75,80-85 1iu3 d1iu3f_ F:21-38,59-68,70-75,80-85 8. c.118.1 GckA/TtuD-like GckA/TtuD-like consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456, Rossmann-like topology ! Domain 2 has mixed sheet of 6 strands, order 126345; strands 5 and 6 are antiparallel to the rest; some similarity to CbiF Domain 2 2b8n d2b8nb1 B:4-23,279-298,342-351,407-417 2b8n d2b8na1 A:4-23,279-298,342-351,407-417 10. d.90.1 FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like core: (alpha-beta-alpha-beta)2; 3 layers a/b/a; antiparallel beta-sheet: 1243 2b67 d2b67c1 C:22-36,61-72,73-82,170-181 1kqc d1kqcd_ D:23-37,64-78,79-88,182-193 2b67 d2b67b1 B:22-36,62-73,73-82,170-181 2b67 d2b67a1 A:22-36,61-72,73-82,170-181 1icr d1icra_ A:23-37,64-78,79-88,182-193 2b67 d2b67d1 D:22-36,61-72,73-82,170-181 1kqd d1kqdd_ D:23-37,64-78,79-88,182-193 1kqb d1kqba_ A:23-37,64-78,79-88,182-193 1kqb d1kqbd_ D:23-37,64-78,79-88,182-193 1oon d1oona_ A:23-37,64-78,79-88,182-193 1icv d1icvb_ B:23-37,64-78,79-88,182-193 1kqc d1kqcb_ B:23-37,64-78,79-88,182-193 1kqb d1kqbb_ B:23-37,64-78,79-88,182-193 1nec d1neca_ A:22-36,63-77,78-87,181-192 1kqd d1kqdb_ B:23-37,64-78,79-88,182-193 1ooq d1ooqa_ A:23-37,68-78,79-88,182-193 1nec d1necb_ B:22-36,63-77,78-87,181-192 1ooq d1ooqb_ B:23-37,68-78,79-88,182-193 1kqb d1kqbc_ C:23-37,68-78,79-88,182-193 1icv d1icva_ A:23-37,68-78,79-88,182-193 1kqd d1kqdc_ C:23-37,68-78,79-88,182-193 1kqc d1kqcc_ C:23-37,68-78,79-88,182-193 1nec d1necd_ D:22-36,63-78,78-87,181-192 1icr d1icrb_ B:23-37,68-79,79-88,182-193 1oo5 d1oo5b_ B:23-37,68-79,79-88,182-193 1ds7 d1ds7a_ A:23-37,68-79,79-88,182-193 1oon d1oonb_ B:23-37,68-79,79-88,182-193 2fre d2freb1 B:32-46,75-85,86-95,152-163 2fre d2frea1 A:32-46,75-85,86-95,152-163 1ds7 d1ds7b_ B:23-37,68-79,79-88,182-193 2ifa d2ifab1 B:24-40,75-93,93-101,168-178 1kqc d1kqca_ A:23-37,65-78,79-88,182-192 2ifa d2ifae1 E:24-40,75-93,93-101,168-178 2ifa d2ifaa1 A:24-40,75-93,93-101,168-178 2ifa d2ifac1 C:24-40,75-93,93-101,168-178 1ylu d1ylub1 B:23-37,64-78,79-88,182-192 1yki d1ykic1 C:23-37,64-78,79-88,182-192 1yki d1ykid1 D:23-37,64-78,79-88,182-192 1yki d1ykib1 B:23-37,64-78,79-88,182-192 1yki d1ykia1 A:23-37,64-78,79-88,182-192 1ylr d1ylra1 A:23-37,64-78,79-88,182-192 1kqd d1kqda_ A:23-37,64-78,79-88,182-192 1oo6 d1oo6a_ A:23-37,64-78,79-88,182-192 1idt d1idta_ A:23-37,64-78,79-88,182-192 1icu d1icud_ D:23-37,64-78,79-88,182-192 1ylu d1ylua1 A:23-37,64-78,79-88,182-192 1icu d1icua_ A:23-37,64-78,79-88,182-192 1nec d1necc_ C:22-36,63-77,78-87,181-191 1icu d1icub_ B:23-37,68-78,79-88,182-192 1icv d1icvd_ D:23-37,68-78,79-88,182-192 1ylr d1ylrb1 B:23-37,68-79,79-88,182-192 1oo5 d1oo5a_ A:23-37,68-79,79-88,182-192 1idt d1idtb_ B:23-37,68-79,79-88,182-192 1icv d1icvc_ C:23-37,68-78,79-88,182-192 1oo6 d1oo6b_ B:23-37,68-79,79-88,182-192 1icu d1icuc_ C:23-37,68-78,79-88,182-192 2ifa d2ifad1 D:24-40,75-93,93-102,167-178 2ifa d2ifaf1 F:24-40,75-93,93-102,167-178 1ywq d1ywqa1 A:28-43,77-94,95-103,170-180 13. d.111.1 PR-1-like PR-1-like alpha-beta-alpha-beta-alpha(2)-beta(2); 3 layers, alpha/beta/alpha; mixed sheet: order 1342 1rc9 d1rc9a1 A:42-56,112-121,125-134,140-149 1cfe d1cfea_ A:26-44,90-99,103-113,115-124 1smb d1smba_ A:32-50,101-109,112-123,125-135 1qnx d1qnxa_ A:80-94,154-162,165-178,179-191 1cfe d1cfea_ A:26-44,63-75,103-113,115-124 1rc9 d1rc9a1 A:42-56,85-100,125-134,140-149 1smb d1smba_ A:32-50,75-90,112-123,125-135 1qnx d1qnxa_ A:80-94,125-140,165-178,179-191 16. d.220.1 Metal cation-transporting ATPase, ATP-binding domain N Metal cation-transporting ATPase, ATP-binding domain N unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432 1vfp d1vfpa3 A:439-453,538-555,559-568,591-601 1t5t d1t5ta3 A:439-453,538-555,559-568,591-601 1vfp d1vfpb3 B:439-453,538-555,559-568,591-601 1svj d1svja_ A:346-362,413-427,428-436,437-447 1u7q d1u7qa_ A:346-361,413-427,428-436,437-447 1iwo d1iwoa3 A:439-453,538-555,559-568,591-601 1iwo d1iwob3 B:439-453,538-555,559-568,591-601 1t5s d1t5sa3 A:439-453,538-555,559-568,591-601 2zbd d2zbda3 A:439-453,538-555,559-568,591-601 2b8e d2b8ea2 A:462-476,514-528,529-537,538-548 1wpg d1wpgb3 B:439-453,538-555,559-568,591-601 1wpg d1wpgc3 C:439-453,538-555,559-568,591-601 2b8e d2b8ec2 C:462-476,514-528,529-537,538-548 1wpg d1wpgd3 D:439-453,538-555,559-568,591-601 2zbg d2zbga3 A:439-453,538-555,559-568,591-601 1wpg d1wpga3 A:439-453,538-555,559-568,591-601 3b9r d3b9ra3 A:439-453,538-555,559-568,591-601 2b8e d2b8eb2 B:462-476,514-528,529-537,538-548 2zbe d2zbeb3 B:439-453,538-555,559-568,591-601 2zbe d2zbea3 A:439-453,538-555,559-568,591-601 2zbf d2zbfa3 A:439-453,538-555,559-568,591-601 1kju d1kjua3 A:439-453,538-556,559-568,591-600 2a29 d2a29a1 A:346-361,413-427,428-436,437-448 2a00 d2a00a1 A:346-361,413-427,428-436,437-448 1q3i d1q3ia_ A:443-458,524-542,543-553,576-587 32. d.103.1 CytB endotoxin-like CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a 1pp0 d1pp0c_ C:2014-2032,2074-2091,2148-2162,2177-2193 1pp0 d1pp0d_ D:3014-3032,3074-3091,3148-3162,3177-3193 1pp0 d1pp0a_ A:14-32,74-91,148-162,177-193 1pp0 d1pp0b_ B:1014-1032,1074-1091,1148-1162,1177-1193 1pp6 d1pp6e_ E:4014-4032,4077-4091,4148-4162,4179-4193 1vcy d1vcya_ A:14-32,74-91,148-162,177-193 1vgf d1vgfb_ B:1014-1032,1074-1091,1148-1162,1177-1193 1vgf d1vgfa_ A:14-32,74-91,148-162,177-193 1pp6 d1pp6b_ B:1014-1032,1074-1091,1148-1164,1177-1193 1pp6 d1pp6a_ A:14-32,74-91,148-164,177-193 1pp6 d1pp6d_ D:3014-3032,3074-3091,3148-3163,3179-3193 1cby d1cbya_ A:50-68,106-123,182-197,210-226 40. d.237.1 Hypothetical protein YjiA, C-terminal domain Hypothetical protein YjiA, C-terminal domain beta-alpha-beta(4)-alpha; 2 layers: a/b; antiparallel sheet 15234; topological similarity to the HPr-like fold 1nij d1nija2 A:142-152,236-252,254-263,294-303 42. d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 alpha-beta-alpha(2)-beta(3)-alpha; 3 layers a/b/a; antiparallel beta-sheet: 4123 1dt9 d1dt9a3 A:6-28,64-86,91-103,105-115