1. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1k0j d1k0ja1 A:4-9,124-131,136-144,163-170
1cj4 d1cj4a1 A:4-9,124-131,136-144,163-170
1iuv d1iuva1 A:4-9,124-131,136-144,163-170
1pbe d1pbea1 A:4-9,124-131,136-144,163-170
1dod d1doda1 A:4-9,124-131,136-144,163-170
1doc d1doca1 A:4-9,124-131,136-144,163-170
1pdh d1pdha1 A:4-9,124-131,136-144,163-170
1bkw d1bkwa1 A:4-9,124-131,136-144,163-170
1doe d1doea1 A:4-9,124-131,136-144,163-170
1phh d1phha1 A:4-9,124-131,136-144,163-170
1pbc d1pbca1 A:4-9,124-131,136-144,163-170
1ykj d1ykjb1 B:2004-2009,2124-2131,2137-2144,2163-2170
1k0l d1k0la1 A:4-9,124-131,137-144,163-170
1pbb d1pbba1 A:4-9,124-131,136-144,163-170
1pbf d1pbfa1 A:4-9,124-131,137-144,163-170
1d7l d1d7la1 A:4-9,124-131,136-144,163-170
1k0i d1k0ia1 A:4-9,124-131,137-144,163-170
1cj2 d1cj2a1 A:4-9,124-131,136-144,163-170
2phh d2phha1 A:4-9,124-131,136-144,163-170
1iuu d1iuua1 A:4-9,124-131,137-144,163-170
1ykj d1ykja1 A:1004-1009,1124-1131,1136-1144,1163-1170
1pxc d1pxca1 A:4-9,124-131,136-144,163-170
1iuw d1iuwa1 A:4-9,124-131,137-144,163-170
1iux d1iuxa1 A:4-9,124-131,137-144,163-170
1cc6 d1cc6a1 A:4-9,124-131,137-144,163-170
1pxb d1pxba1 A:4-9,124-131,136-144,163-170
1iut d1iuta1 A:4-9,124-131,137-144,163-170
1ius d1iusa1 A:4-9,124-131,137-144,163-170
1bf3 d1bf3a1 A:4-9,124-131,137-144,163-170
1cj3 d1cj3a1 A:4-9,124-131,137-144,163-170
1pbd d1pbda1 A:4-9,124-131,137-144,163-170
1bgn d1bgna1 A:4-9,124-131,137-144,163-170
1dob d1doba1 A:4-9,124-131,137-144,163-170
1cc4 d1cc4a1 A:4-9,124-131,137-144,163-170
1bgj d1bgja1 A:4-9,124-131,137-144,163-170
1pxa d1pxaa1 A:4-9,124-131,137-144,163-170
1foh d1fohc5 C:9-14,141-150,161-169,229-236
1pn0 d1pn0a1 A:9-14,141-150,161-169,229-236
1pn0 d1pn0d1 D:9-14,141-150,161-169,229-236
1foh d1fohd5 D:9-14,141-150,161-169,229-236
1foh d1foha5 A:9-14,141-150,161-169,229-236
1pn0 d1pn0c1 C:9-14,141-150,161-169,229-236
1pn0 d1pn0b1 B:9-14,141-150,161-169,229-236
1foh d1fohb5 B:9-14,141-150,161-169,229-236
2vou d2voub1 B:7-12,119-127,128-135,153-161
2vou d2vouc1 C:7-12,119-127,128-135,153-161
2vou d2voua1 A:7-12,119-127,128-135,153-161
1f3p d1f3pa1 A:9-14,81-88,89-95,241-248
1ng4 d1ng4a1 A:6-11,174-179,183-189,202-214
2gqf d2gqfa1 A:6-11,131-138,145-151,176-186
3c96 d3c96a1 A:5-11,129-139,140-149,169-177
1ng3 d1ng3a1 A:6-11,174-179,183-189,202-214
2ivd d2ivda1 A:11-16,249-257,260-268,284-297
1ng4 d1ng4b1 B:6-11,174-179,183-189,202-214
1ryi d1ryia1 A:6-11,174-179,183-189,202-214
1ng3 d1ng3b1 B:6-11,174-179,183-189,202-214
2gmh d2gmha1 A:37-42,166-174,176-187,217-228
1ryi d1ryid1 D:6-11,174-179,183-189,202-214
1d4d d1d4da2 A:127-132,275-283,287-296,342-352
2gmj d2gmja1 A:37-42,166-174,176-187,217-228
1gv4 d1gv4a1 A:132-137,231-238,239-245,403-410
1ryi d1ryib1 B:6-11,174-179,183-189,202-214
1pj6 d1pj6a2 A:6-11,174-181,182-190,203-215
1pj7 d1pj7a2 A:6-11,175-181,182-190,203-215
2gmh d2gmhb1 B:37-42,166-174,176-187,217-228
2gmj d2gmjb1 B:37-42,166-174,176-187,217-228
1ryi d1ryic1 C:6-11,174-181,182-189,202-214
1chu d1chua2 A:10-15,159-167,179-187,222-232
1pj5 d1pj5a2 A:6-11,175-181,182-190,203-215
1d4e d1d4ea2 A:127-132,274-283,287-296,342-352
1gv4 d1gv4b1 B:132-137,231-237,240-245,403-410
1mxt d1mxta1 A:12-17,247-256,260-270,290-305
1n4w d1n4wa1 A:12-17,247-256,260-270,290-305
3cnj d3cnja1 A:12-17,247-256,260-270,290-305
1n1p d1n1pa1 A:12-17,247-256,260-270,290-305
1xhc d1xhca1 A:1-7,74-81,82-88,227-235
1n4v d1n4va1 A:12-17,247-256,260-270,290-305
2i0z d2i0za1 A:4-9,132-140,141-149,175-185
1ijh d1ijha1 A:12-17,247-256,260-270,290-305
2gew d2gewa1 A:12-17,247-255,260-270,290-305
2ive d2ivea1 A:11-16,249-258,259-268,284-297
1coy d1coya1 A:13-18,247-257,259-270,290-305
1knp d1knpa2 A:10-15,159-167,179-188,222-232
1knr d1knra2 A:10-15,159-167,179-188,222-232
3cox d3coxa1 A:13-18,247-257,259-270,290-305
1jnz d1jnza2 A:24-29,173-182,188-197,241-251
1jnr d1jnra2 A:24-29,173-182,188-197,241-251
1jrx d1jrxb2 B:128-133,275-285,287-297,343-353
1jnr d1jnrc2 C:24-29,173-182,188-197,241-251
1jrx d1jrxa2 A:128-133,275-285,287-297,343-353
1jnz d1jnzc2 C:2024-2029,2173-2182,2188-2197,2241-2251
2c3c d2c3ca1 A:45-50,158-162,164-169,317-326
2c3c d2c3cb1 B:45-50,158-162,164-169,317-326
1mo9 d1mo9a1 A:45-50,158-162,164-169,317-326
1mok d1mokd1 D:45-50,158-162,164-169,317-326
1mok d1mokb1 B:45-50,158-162,164-169,317-326
1n4u d1n4ua1 A:12-17,247-257,259-270,290-305
1mok d1mokc1 C:45-50,158-162,164-169,317-326
3b6d d3b6da1 A:12-17,247-257,259-270,290-305
2ivd d2ivdb1 B:10-16,249-258,259-268,284-297
1jry d1jrya2 A:128-133,275-285,287-297,343-353
2igo d2igof1 F:48-53,280-289,294-304,321-333
1mo9 d1mo9b1 B:45-50,158-162,164-169,317-326
1p2h d1p2ha2 A:128-133,275-285,287-297,343-353
2ive d2iveb1 B:10-16,249-258,259-268,284-297
1jry d1jryb2 B:128-133,275-285,287-297,343-353
2c3d d2c3da1 A:45-50,158-162,164-169,317-326
2c3d d2c3db1 B:45-50,158-162,164-169,317-326
1jrz d1jrza2 A:128-133,275-285,287-297,343-353
1ksu d1ksua2 A:128-133,275-285,287-297,343-353
1ksu d1ksub2 B:128-133,275-285,287-297,343-353
3b3r d3b3ra1 A:12-17,247-257,259-270,290-305
1tzl d1tzlb1 B:48-53,280-289,294-304,321-333
1b8s d1b8sa1 A:12-17,247-257,259-270,290-305
1b4v d1b4va1 A:12-17,247-257,259-270,290-305
1q9i d1q9ia2 A:128-133,275-285,287-297,343-353
1jrz d1jrzb2 B:128-133,275-285,287-297,343-353
1y0p d1y0pa2 A:128-133,275-285,287-297,343-353
2b7s d2b7sa2 A:128-133,275-285,287-297,343-353
1mok d1moka1 A:45-50,158-162,164-169,317-326
1d4c d1d4cc2 C:127-132,274-284,286-296,342-352
1cbo d1cboa1 A:12-17,247-257,259-270,290-305
1rp0 d1rp0a1 A:41-46,141-150,151-160,195-205
1p2e d1p2ea2 A:128-133,275-285,287-297,343-353
1e39 d1e39a2 A:128-133,275-285,287-297,343-353
1qjd d1qjda2 A:128-133,275-285,287-297,343-353
2b76 d2b76m2 M:6-11,154-164,165-176,210-217
1cf3 d1cf3a1 A:21-26,248-257,261-271,290-302
1tzl d1tzld1 D:48-53,280-289,294-304,321-333
1lj1 d1lj1a2 A:128-133,275-285,287-297,343-353
1d4c d1d4cb2 B:127-132,274-284,286-296,342-352
1lj1 d1lj1b2 B:128-133,275-285,287-297,343-353
1cc2 d1cc2a1 A:12-17,247-257,259-270,290-305
2b7r d2b7ra2 A:128-133,275-285,287-297,343-353
1d4c d1d4ca2 A:127-132,274-284,286-296,342-352
1m64 d1m64b2 B:128-133,275-285,287-297,343-353
1kss d1kssa2 A:128-133,275-285,287-297,343-353
1m64 d1m64a2 A:128-133,275-285,287-297,343-353
1d4c d1d4cd2 D:127-132,274-284,286-296,342-352
1qo8 d1qo8d2 D:123-128,270-280,282-292,338-348
1o5w d1o5wb1 B:1015-1020,1242-1249,1253-1260,1274-1282
1qo8 d1qo8a2 A:123-128,270-280,282-292,338-348
1o5w d1o5wd1 D:3015-3020,3242-3249,3253-3260,3274-3282
1o5w d1o5wc1 C:2015-2020,2242-2249,2253-2260,2274-2282
1o5w d1o5wa1 A:15-20,242-249,253-260,274-282
3cir d3cira2 A:6-11,154-164,165-176,210-220
1kf6 d1kf6a2 A:6-11,154-164,165-176,210-220
1l0v d1l0va2 A:6-11,154-164,165-176,210-220
2b76 d2b76a2 A:6-11,154-164,165-176,210-220
1kfy d1kfya2 A:6-11,154-164,165-176,210-220
2c72 d2c72a1 A:6-11,234-240,244-250,265-273
2bk5 d2bk5b1 B:6-11,234-240,244-250,265-273
2c72 d2c72b1 B:6-11,234-240,244-250,265-273
2c70 d2c70a1 A:6-11,234-240,244-250,265-273
1nek d1neka2 A:9-14,163-173,175-186,220-230
2bs4 d2bs4d2 D:7-12,178-188,189-200,234-244
2bs4 d2bs4a2 A:7-12,178-188,189-200,234-244
2c73 d2c73b1 B:6-11,234-240,244-250,265-273
2c75 d2c75b1 B:6-11,234-240,244-250,265-273
2v61 d2v61b1 B:6-11,234-240,244-250,265-273
2c73 d2c73a1 A:6-11,234-240,244-250,265-273
2c75 d2c75a1 A:6-11,234-240,244-250,265-273
2c76 d2c76b1 B:6-11,234-240,244-250,265-273
1e7p d1e7pg2 G:7-12,178-188,189-200,234-244
1e7p d1e7pd2 D:7-12,178-188,189-200,234-244
1e7p d1e7pa2 A:7-12,178-188,189-200,234-244
1e7p d1e7pj2 J:7-12,178-188,189-200,234-244
2bs2 d2bs2a2 A:7-12,178-188,189-200,234-244
1oj9 d1oj9a1 A:6-11,234-240,244-250,265-273
2c67 d2c67b1 B:6-11,234-240,244-250,265-273
2c64 d2c64a1 A:6-11,234-240,244-250,265-273
2bs2 d2bs2d2 D:7-12,178-188,189-200,234-244
2c64 d2c64b1 B:6-11,234-240,244-250,265-273
1nen d1nena2 A:9-14,163-173,175-186,220-230
1l0v d1l0vm2 M:7-11,154-164,165-176,210-220
1ojd d1ojdi1 I:6-11,234-240,244-250,265-273
2c65 d2c65b1 B:6-11,234-240,244-250,265-273
1ojd d1ojda1 A:6-11,234-240,244-250,265-273
1oj9 d1oj9b1 B:6-11,234-240,244-250,265-273
1kfy d1kfym2 M:6-11,154-164,165-176,210-220
2c70 d2c70b1 B:6-11,234-240,244-250,265-273
1qlb d1qlba2 A:7-12,178-188,189-200,234-244
2bk4 d2bk4b1 B:6-11,234-240,244-250,265-273
1ojd d1ojdl1 L:6-11,234-240,244-250,265-273
1qlb d1qlbd2 D:7-12,178-188,189-200,234-244
2byb d2bybb1 B:6-11,234-240,244-250,265-273
2byb d2byba1 A:6-11,234-240,244-250,265-273
1ojd d1ojde1 E:6-11,234-240,244-250,265-273
2v5z d2v5zb1 B:6-11,234-240,244-250,265-273
2bs3 d2bs3a2 A:7-12,178-188,189-200,234-244
2bs3 d2bs3d2 D:7-12,178-188,189-200,234-244
1kf6 d1kf6m2 M:6-11,154-164,165-176,210-220
3cir d3cirm2 M:6-11,154-164,165-175,210-220
2b76 d2b76m2 M:31-36,154-164,165-176,210-217
2. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1pll d1plla_ A:6-11,36-40,55-59,64-75
1f9u d1f9ua_ A:465-474,547-554,555-562,678-690
1f9w d1f9wb_ B:511-524,547-554,555-562,678-685
1f9w d1f9wa_ A:511-524,547-554,555-562,678-685
1f9t d1f9ta_ A:510-524,547-554,555-562,678-685
3kar d3kara_ A:510-524,547-554,555-562,678-685
1kdr d1kdrb_ B:31-35,68-75,76-83,106-122
1f9v d1f9va_ A:510-524,547-554,555-562,678-685
1cz7 d1cz7a_ A:473-486,500-505,511-516,625-632
1cz7 d1cz7b_ B:473-486,500-505,511-516,625-632
1n6m d1n6ma_ A:473-486,500-505,511-516,625-632
1cz7 d1cz7c_ C:473-486,500-505,511-516,625-632
3cnz d3cnza1 A:1007-1021,1038-1044,1046-1052,1165-1172
3cob d3coba1 A:1007-1021,1038-1044,1046-1052,1165-1172
3cob d3cobc1 C:1007-1021,1038-1044,1046-1052,1165-1172
1kdr d1kdra_ A:31-36,68-72,79-83,106-122
3cnz d3cnzb1 B:1007-1021,1038-1044,1046-1052,1165-1172
1q3t d1q3ta_ A:42-46,79-86,88-95,118-136
1sdm d1sdma_ A:1007-1021,1038-1044,1046-1052,1165-1172
1kdt d1kdta_ A:31-35,68-75,76-83,106-122
2pg2 d2pg2b1 B:152-165,182-187,193-198,314-321
2uym d2uymb1 B:152-165,182-187,193-198,314-321
1kdp d1kdpb_ B:31-35,68-75,76-83,106-122
1kdo d1kdob_ B:31-35,68-75,76-83,106-122
2uyi d2uyib1 B:152-165,183-187,193-197,314-321
1cz7 d1cz7d_ D:473-486,500-505,511-516,625-636
1x88 d1x88a1 A:152-165,182-187,193-198,314-321
2fl6 d2fl6b1 B:152-165,182-187,193-198,314-321
2fme d2fmeb1 B:153-165,183-187,193-197,314-321
2fme d2fmea1 A:153-165,183-187,193-197,314-321
2g1q d2g1qb1 B:152-165,182-187,193-198,314-321
3cjo d3cjob1 B:152-165,182-187,193-198,314-321
1yrs d1yrsb1 B:152-165,182-187,193-198,314-321
2q2y d2q2yb1 B:152-165,182-187,193-198,314-321
1q0b d1q0bb_ B:152-165,182-187,193-198,314-321
2g1q d2g1qa1 A:152-165,182-187,193-198,314-321
2ieh d2iehb1 B:152-165,182-187,193-198,314-321
2fky d2fkyb1 B:152-165,182-187,193-198,314-321
2gm1 d2gm1a1 A:153-165,182-187,193-198,314-321
2ncd d2ncda_ A:473-486,500-505,511-516,625-636
2gm1 d2gm1b1 B:153-165,182-187,193-198,314-321
2q2z d2q2zb1 B:152-165,182-187,193-198,314-321
2gm1 d2gm1d1 D:153-165,182-187,193-198,314-321
2fl2 d2fl2b1 B:152-165,182-187,193-198,314-321
2gm1 d2gm1e1 E:153-165,182-187,193-198,314-321
2uym d2uyma1 A:151-165,182-187,193-198,314-321
2uyi d2uyia1 A:151-165,182-187,193-198,314-321
2pg2 d2pg2a1 A:151-165,182-187,193-198,314-321
2ieh d2ieha1 A:151-165,183-187,193-197,314-321
3cjo d3cjoa1 A:151-165,182-187,193-198,314-321
2fky d2fkya1 A:151-165,182-187,193-198,314-321
1kdp d1kdpa_ A:31-35,68-72,79-83,106-122
1yrs d1yrsa1 A:151-165,182-187,193-198,314-321
1kdo d1kdoa_ A:31-35,68-73,78-83,106-122
2q2z d2q2za1 A:151-165,182-187,193-198,314-321
1q0b d1q0ba_ A:151-165,182-187,193-198,314-321
1x88 d1x88b1 B:151-165,182-187,193-198,314-321
1kdt d1kdtb_ B:31-35,68-75,76-83,106-122
2fl2 d2fl2a1 A:151-165,183-187,193-197,314-321
2fl6 d2fl6a1 A:151-165,182-187,193-198,314-321
2q2y d2q2ya1 A:151-165,182-187,193-198,314-321
2cmk d2cmka_ A:31-35,68-72,79-83,106-122
1ii6 d1ii6b_ B:152-165,183-187,193-197,314-326
1cke d1ckea_ A:31-36,68-75,76-83,106-122
3. c.103.1 MTH938-like
MTH938-like core: 3 layers, b+a/b/a ; the central mixed sheet of 5 strands: order 21534; strand 2 is antiparallel to the rest
2q4q d2q4qa1 A:5-11,24-30,31-36,96-111
2ab1 d2ab1a1 A:5-11,24-30,31-36,96-111
2ab1 d2ab1b1 B:5-11,24-30,31-36,96-111
2q4q d2q4qb1 B:5-11,24-30,31-35,96-111
4. c.30.1 PreATP-grasp domain precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function !
PreATP-grasp domain 3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands ! possible rudiment form of Rossmann-fold domain
1pk8 d1pk8f1 F:113-120,150-158,159-166,198-209
2io9 d2io9b1 B:380-387,418-423,425-430,474-481
2io9 d2io9a1 A:380-387,418-423,425-430,474-481
1pk8 d1pk8d1 D:113-120,150-158,159-167,198-209
2io7 d2io7a1 A:380-387,418-423,425-430,474-481
1pk8 d1pk8c1 C:113-120,150-157,159-166,197-209
1pk8 d1pk8g1 G:113-120,150-157,159-166,197-209
1pk8 d1pk8e1 E:113-120,150-158,159-166,197-209
1aux d1auxa1 A:113-120,150-157,159-166,197-209
1pk8 d1pk8a1 A:113-120,150-158,159-170,198-209
1aux d1auxb1 B:113-120,150-157,159-168,197-209
2hgs d2hgsa1 A:204-210,245-250,252-257,276-289
1m0w d1m0wb1 B:1218-1225,1260-1266,1267-1274,1295-1309
1m0w d1m0wa1 A:218-225,260-266,267-274,295-309
1m0w d1m0wa1 A:248-253,260-266,267-274,295-309
1m0w d1m0wb1 B:1248-1253,1260-1266,1267-1274,1295-1309
5. c.40.1 Methylesterase CheB, C-terminal domain
Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567
1a2o d1a2ob2 B:223-228,232-240,241-249,259-272
1a2o d1a2oa2 A:223-228,232-240,241-249,259-272
6. c.91.1 PEP carboxykinase-like
PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
2olr d2olra1 A:241-248,269-275,276-281,417-433
2pxz d2pxzx1 X:241-248,269-275,276-281,417-433
1aq2 d1aq2a1 A:241-248,269-275,276-281,417-433
7. b.2.5 p53-like transcription factors
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1le5 d1le5f2 F:91-100,108-113,137-142,146-162
1le5 d1le5b2 B:91-99,108-113,137-142,146-162
1ooa d1ooaa2 A:89-101,108-114,136-142,143-162
1vkx d1vkxb2 B:391-400,408-413,437-442,446-462
1le5 d1le5a2 A:70-79,88-92,116-120,122-137
1ram d1ramb2 B:69-79,88-92,116-120,122-137
2i9t d2i9tb2 B:391-401,409-413,437-441,443-462
1le9 d1le9e2 E:67-79,88-92,116-120,122-137
2ram d2ramb2 B:69-79,88-92,116-120,122-137
2i9t d2i9ta2 A:70-79,88-92,116-120,122-137
1le9 d1le9a2 A:69-79,88-93,115-120,122-137
1vkx d1vkxa2 A:70-78,88-93,115-120,122-137
1le9 d1le9f2 F:89-99,108-113,137-142,143-162
1nfk d1nfka2 A:90-99,109-113,137-141,143-162
1gji d1gjib2 B:57-66,76-80,104-108,110-125
1gji d1gjia2 A:56-66,76-80,104-108,110-125
8. c.55.1 Actin-like ATPase domain duplication contains two domains of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1xup d1xupx1 X:78-83,85-92,100-104,165-176
3bp8 d3bp8a2 A:144-153,155-160,161-167,382-397
1glf d1glfo2 O:239-244,286-294,296-300,437-452
1glc d1glcg2 G:237-244,286-294,296-300,437-452
1gld d1gldg2 G:237-244,286-294,296-300,437-452
1glb d1glbg2 G:237-244,286-294,296-300,437-452
1gle d1gleg2 G:237-244,286-294,296-300,437-452
1bu6 d1bu6x2 X:236-244,286-294,296-300,437-452
1glf d1glfx2 X:236-244,286-294,296-300,437-452
1bot d1botz2 Z:236-244,286-294,296-300,437-452
1bwf d1bwfo2 O:235-244,286-294,296-300,437-452
1bo5 d1bo5o2 O:236-244,286-294,296-300,437-452
1bo5 d1bo5z2 Z:236-244,286-294,296-300,437-452
1glf d1glfz2 Z:236-244,286-294,296-300,437-452
1bu6 d1bu6o2 O:236-244,286-294,296-300,437-452
1gll d1glly2 Y:235-244,286-294,296-300,437-452
1bwf d1bwfy2 Y:235-244,286-294,296-300,437-452
1glj d1gljo2 O:236-244,286-294,296-308,437-452
1gll d1gllo2 O:235-244,286-294,296-308,437-452
9. d.175.1 Penicillin binding protein dimerisation domain
Penicillin binding protein dimerisation domain unusual fold
1vqq d1vqqa2 A:233-244,253-259,276-281,367-374
1mwu d1mwua2 A:233-244,254-259,276-281,367-374
1mwr d1mwrb2 B:233-244,254-259,276-281,367-374
10. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
1zcm d1zcma1 A:83-87,106-111,176-181,185-200
2ary d2aryb1 B:83-87,105-111,176-181,185-200
2nqi d2nqia1 A:83-87,105-111,176-181,185-200
2ary d2arya1 A:83-87,106-111,176-181,185-200
1qxp d1qxpa4 A:73-77,96-101,166-171,176-190
11. a.102.5 Family 10 polysaccharide lyase
alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
1gxm d1gxmb_ B:499-503,511-516,517-521,532-547
1gxo d1gxoa_ A:499-503,511-516,517-521,532-547
12. d.142.1 Glutathione synthetase ATP-binding domain-like
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
3eth d3ethb3 B:44-49,158-170,220-231,257-268
3etj d3etjb3 B:44-49,158-170,220-231,257-268
3eth d3etha3 A:44-49,158-170,220-231,257-268
3etj d3etja3 A:44-49,158-170,220-231,257-268
1b6s d1b6sc3 C:44-49,158-170,220-231,257-268
1b6s d1b6sb3 B:44-49,158-170,220-231,257-268
1b6s d1b6sa3 A:44-49,158-170,220-231,257-268
1b6s d1b6sd3 D:44-49,158-170,220-231,257-268
1b6r d1b6ra3 A:44-49,158-170,220-231,257-268
1ez1 d1ez1b3 B:77-82,201-212,261-272,298-309
1ez1 d1ez1a3 A:77-82,201-212,261-272,298-309
1kjj d1kjjb3 B:77-82,201-212,261-272,298-309
1kj8 d1kj8a3 A:77-82,201-212,261-272,298-309
1kjq d1kjqb3 B:77-82,201-212,261-272,298-309
1kj9 d1kj9a3 A:77-82,201-212,261-272,298-309
1kj9 d1kj9b3 B:77-82,201-212,261-272,298-309
1kj8 d1kj8b3 B:77-82,201-212,261-272,298-309
1eyz d1eyzb3 B:77-82,201-212,261-272,298-309
1kji d1kjib3 B:77-82,201-212,261-272,298-309
1kjq d1kjqa3 A:77-82,201-212,261-272,298-309
1eyz d1eyza3 A:77-82,201-212,261-272,298-309
1kji d1kjia3 A:77-82,201-212,261-272,298-309
1kjj d1kjja3 A:77-82,201-212,261-272,298-309
1gsa d1gsaa2 A:81-87,207-215,268-276,300-314
1gsh d1gsha2 A:81-87,208-215,268-276,300-316
2glt d2glta2 A:81-87,208-215,268-276,300-316
1glv d1glva2 A:81-87,206-215,268-276,300-316
13. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1kfw d1kfwa1 A:320-327,366-373,374-382,390-405
1rd6 d1rd6a2 A:436-442,491-498,499-508,517-532
1x6l d1x6la2 A:436-442,491-498,499-508,517-532
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 70 (enumeration index: query96) of S4
1yq3 A:20-25,175-185,186-197,231-241
3ad8 A:129-134,201-209,211-219,383-391
3ad8 B:22-27,194-203,204-212,225-237
3fbs A:4-9,80-84,87-94,228-235
3fbs B:4-9,78-86,87-94,228-235
2a87 B:16-21,94-98,102-108,253-262
2wu5 A:9-14,163-173,175-186,220-230
2wu5 I:9-14,163-173,175-186,220-230
2wu5 E:9-14,163-173,175-186,220-230
3do7 A:154-164,174-178,203-207,209-224
2ar8 A:6-12,186-194,196-204,222-230
2gah A:130-135,202-210,212-220,384-392
2gah B:23-28,195-204,205-213,226-238
2xfo B:6-11,234-240,244-250,265-273
2xfo A:6-11,234-240,244-250,265-273
2x7e A:152-165,182-187,193-198,314-321
2x7e B:151-165,182-187,193-198,314-321
3alf A:226-233,280-287,288-296,304-319
2pnl G:540-549,611-615,617-624,670-682
3ryc A:2-10,53-57,59-63,114-130
2rep A:452-466,485-494,495-501,618-625
2ba9 A:8-13,225-233,234-241,255-263
3t2z A:2-8,77-84,85-91,267-274
3t2z B:2-8,77-84,85-91,267-274
3gd3 D:132-137,231-238,239-245,403-410
3gd3 B:132-137,231-237,240-245,403-410
2apg A:6-12,186-194,196-204,222-230
3h4s A:1007-1021,1038-1044,1046-1052,1165-1172
3s61 B:12-17,127-139,140-152,361-368
3aeb A:21-26,176-186,187-198,232-242
2vz2 A:6-11,234-240,244-250,265-273
2e4g A:6-12,196-204,206-214,232-240
2e4g B:6-12,196-204,206-214,232-240
3kak B:261-266,273-278,280-285,305-319
3kak A:232-238,273-278,280-285,305-319
3kak B:232-238,273-278,280-285,305-319
3kak A:261-266,273-278,280-285,305-319
3q9t C:9-14,227-238,239-250,268-280
3q9t B:9-14,227-238,239-250,268-280
3q9t A:9-14,227-238,239-250,268-280
3gyi A:12-17,247-256,260-270,290-305
3ae9 A:21-26,176-186,187-198,232-242
3ae3 A:21-26,176-186,187-198,232-242
2yg7 B:7-12,234-242,243-250,265-273
2yg7 A:7-12,234-242,243-250,265-273
3ae1 A:21-26,176-186,187-198,232-242
2gr1 A:8-14,81-88,89-95,241-248
3dje B:8-13,186-194,195-203,217-226
3dje A:5-13,186-194,195-203,217-226
3l8k B:4-9,107-113,115-122,273-280
3l8k A:4-9,107-113,115-122,273-280
3aef A:21-26,176-186,187-198,232-242
3ezw B:236-244,286-294,296-300,437-452
2fbw A:20-25,175-185,186-197,231-241
2fbw N:20-25,175-185,186-197,231-241
3p9u D:18-23,138-146,147-154,172-180
3p9u C:18-23,138-146,147-154,172-180
3p9u B:18-23,138-146,147-154,172-180
3p9u A:18-23,138-146,147-154,172-180
3awi B:265-271,431-439,440-447,461-469
3awi F:265-271,431-439,440-447,461-469
3awi E:265-271,431-439,440-447,461-469
3awi D:265-271,431-439,440-447,461-469
3awi C:265-271,431-439,440-447,461-469
3awi A:265-271,431-439,440-447,461-469
3kaj A:232-238,273-278,280-285,305-319
3kaj B:232-238,274-278,280-285,305-319
3kaj A:261-266,273-278,280-285,305-319
3l9h B:152-165,182-187,193-198,314-321
3l9h A:151-165,182-187,193-198,314-321
2oa1 A:6-12,196-204,206-214,232-240
2oa1 B:6-12,196-204,206-214,232-240
3aec A:21-26,176-186,187-198,232-242
2r0c A:8-13,135-145,146-156,176-183
3hyx D:3-9,77-84,85-91,257-264
3gut H:389-399,409-413,437-441,443-462
3gut D:389-399,409-413,437-441,443-462
3gut F:389-400,408-413,437-442,443-462
2wdq E:9-14,163-173,175-186,220-230
2wdq A:9-14,163-173,175-186,220-230
2wdq I:9-14,163-173,175-186,220-230
3fpz A:67-72,168-176,185-193,243-254
3fpz B:67-72,168-176,185-193,243-254
2olo A:6-11,175-183,184-191,204-216
3sfe A:21-26,176-186,187-198,232-242
2gqw A:8-14,81-88,89-95,241-248
3k6j A:22-26,168-175,182-188,193-208
2zbw B:7-12,86-95,96-103,254-261
3fmw A:14-19,132-141,142-151,170-177
3fmw C:14-19,132-141,142-151,170-177
3fmw B:14-19,132-141,142-151,170-177
3kal B:231-238,273-278,280-285,305-319
3kal A:231-238,273-278,280-285,305-319
3kal B:261-266,273-278,280-285,305-319
3kal A:261-266,273-278,280-285,305-319
3dme A:6-11,171-180,182-190,205-217
3dme B:6-11,171-180,182-190,205-217
3gd4 A:132-137,231-238,239-245,403-410
3gd4 B:132-137,231-238,239-245,403-410
2oal A:6-12,196-204,206-214,232-240
2oal B:6-12,196-204,206-214,232-240
3gsi A:6-11,175-181,182-190,203-215
3kpk A:2-8,77-84,85-91,267-274
3abv A:21-26,176-186,187-198,232-242
3df0 A:73-77,96-101,166-171,175-190
3rgw L:2-7,29-38,40-50,567-574
2oam B:6-12,196-204,206-214,232-240
2oam A:6-12,196-204,206-214,232-240
3ka7 A:1-7,218-226,227-235,249-258
2ws3 E:9-14,163-173,175-186,220-230
2ws3 A:9-14,163-173,175-186,220-230
2ws3 I:9-14,163-173,175-186,220-230
2x7d A:152-165,182-187,193-198,314-321
2x7d B:151-165,182-187,193-198,314-321
3e1t A:9-14,131-141,142-152,172-179
2aqj A:6-12,186-194,196-204,222-230
2r0p A:8-13,135-145,146-156,176-183
2xfn B:6-11,234-240,244-250,265-273
3fim B:28-34,229-241,247-253,273-285
3hzl A:6-11,175-183,184-191,204-216
2xae A:152-165,182-187,193-198,314-321
2xae B:153-165,182-187,193-198,314-326
2xae C:153-165,182-187,193-198,314-321
3lsk D:48-53,280-289,294-304,321-333
3p4q M:6-11,154-164,168-176,210-220
3p4q A:6-11,154-164,165-176,210-220
2nqa A:73-77,95-101,166-171,175-190
2nqa B:73-77,97-101,166-170,175-190
2cvj A:3-8,78-85,86-93,109-117
2xcg B:6-11,234-240,244-250,265-273
2xcg A:6-11,234-240,244-250,265-273
3k5e B:152-165,182-187,193-198,314-321
3k5e A:151-165,182-187,193-198,314-321
2qa2 A:4-9,117-127,128-137,156-163
3q2o A:71-76,188-199,249-260,287-298
3ken A:153-165,182-187,193-198,314-321
3okg B:49-54,74-80,87-92,115-126
3okg A:49-54,74-80,87-92,115-125
3k4m H:48-53,280-289,294-304,321-333
3ray A:124-131,153-160,161-169,182-191
2x49 A:417-425,429-434,453-460,476-493
1zoy A:21-26,176-186,187-198,232-242
2r45 B:5-10,169-179,180-190,206-219
2r45 A:5-10,169-179,180-190,206-219
2b9y A:8-13,225-233,234-241,255-263
3aeg A:21-26,176-186,187-198,232-242
2gag A:130-135,202-210,212-220,385-392
2gag B:23-28,195-204,205-213,226-238
3ada B:22-27,194-203,204-212,225-237
3ada A:129-134,201-209,211-219,383-391
3lsh B:48-53,280-289,294-304,321-333
3ps9 A:265-271,431-439,440-447,461-469
2dkh A:34-39,163-172,179-189,211-218
2b9x A:8-13,225-233,234-241,255-263
2jkc A:6-12,186-194,196-204,222-230
3aed A:21-26,176-186,187-198,232-242
2r4e B:5-10,169-179,180-190,206-219
3b6v A:137-150,166-170,174-178,320-327
1vrq A:129-134,201-209,211-219,383-391
1vrq B:22-27,194-203,204-212,225-237
2ard A:6-12,185-194,196-205,222-230
2uzz B:4-9,172-179,180-187,200-209
2uzz A:4-9,171-179,180-187,200-209
2yvj A:9-14,80-88,89-96,241-248
3if9 A:6-11,174-179,183-189,202-214
3if9 C:6-11,174-181,182-189,202-214
3if9 D:6-11,174-179,183-189,202-214
3if9 B:6-11,174-179,183-189,202-214
2yg5 A:7-12,234-242,243-250,265-273
3l9a X:174-180,179-188,189-195,218-230
3ae8 A:21-26,176-186,187-198,232-242
2o9z A:6-12,196-204,206-214,232-240
2o9z B:6-12,196-204,206-214,232-240
2fem A:31-36,68-75,76-83,106-122
3sfd A:21-26,176-186,187-198,232-242
3sft A:226-231,235-243,244-252,262-275
3sft A:186-193,235-243,244-252,262-275
2yg6 B:7-12,234-242,243-250,265-273
2yg6 A:7-12,234-242,243-250,265-273
2x5q B:9-15,19-23,25-29,146-163
2x5q A:9-15,19-23,25-30,146-163
2x5q A:9-15,32-38,86-91,146-163
2x5q B:9-15,33-38,86-91,146-163
3nye A:1005-1010,1171-1178,1179-1186,1199-1211
3gyx G:26-31,190-199,205-214,258-268
3gyx K:26-31,190-199,205-214,258-268
3gyx C:26-31,190-199,205-214,258-268
3gyx A:26-31,190-199,205-214,258-268
3gyx E:26-31,190-199,205-214,258-268
3gyx I:26-31,190-199,205-214,258-268
3nks A:3-9,257-264,266-273,287-295
3nne H:15-20,230-239,241-251,270-282
3rha B:9-14,235-244,245-252,266-274
3rha A:9-14,235-244,245-252,266-274
3bfn A:118-127,197-201,203-207,323-330
2rgh A:20-25,194-204,205-216,232-244
3aqu D:227-234,278-285,286-294,302-317
3aqu C:227-233,278-285,286-294,302-317
3aqu B:227-233,278-285,286-294,302-317
3aqu A:227-234,278-285,286-294,302-317
3k4c B:48-53,280-289,294-304,321-333
3p4r M:6-11,154-164,165-176,210-220
3p4r A:6-11,154-164,165-176,210-220
2yg4 B:7-12,234-242,243-250,265-273
2yg4 A:7-12,234-242,243-250,265-273
2xfq A:6-11,234-240,244-250,265-273
2xfq B:6-11,234-240,244-250,265-273
2ywl A:3-8,78-85,86-93,109-117
2ywl B:3-8,80-85,86-93,109-117
2rgj A:6-11,129-139,140-149,169-177
3r20 A:31-35,68-72,79-83,106-124
3nyf A:1005-1010,1171-1178,1179-1186,1199-1211
2x3n A:7-12,129-137,139-147,165-173
3k4n A:48-53,280-289,294-304,321-333
3k4n B:48-53,280-289,294-304,321-333
3kkj B:4-9,127-135,136-143,159-168
3k3b B:152-165,183-187,193-197,314-321
3k3b A:152-165,183-187,193-197,314-321
2qcu A:5-10,169-179,180-190,206-219
2qcu B:5-10,169-179,180-190,206-219
1y56 A:108-113,179-188,189-198,312-320
1y56 A:308-312,322-327,328-333,449-465
1y56 B:7-12,171-179,180-188,201-213
1x31 B:22-27,194-203,204-212,225-237
1x31 A:129-134,201-209,211-219,383-391
2wet A:3-9,194-202,204-212,230-238
2wet D:3-9,194-202,204-212,230-238
2wet B:3-9,194-202,204-212,230-238
2wet C:3-9,194-202,204-212,230-238
3alg A:226-233,280-287,288-296,304-319
3l1c A:473-486,500-505,511-516,625-632
3hqd B:152-165,182-187,193-198,314-326
3ihg C:7-12,141-152,153-164,183-190
3ihg A:7-12,141-151,154-164,183-190
3ihg B:7-12,141-151,154-164,183-190
2x7c B:151-165,182-187,193-198,314-321
2x7c A:152-165,182-187,193-198,314-321
3oz2 A:5-10,122-131,132-142,161-168
3c4n B:38-43,193-199,200-208,232-245
3c4n A:38-43,193-199,200-208,232-245
3aee A:21-26,176-186,187-198,232-242
2z04 A:59-64,173-185,231-242,269-280
2z04 B:59-64,175-185,231-242,269-280
3hyw F:3-9,77-84,85-91,257-264
2e5v B:1-6,139-148,149-158,190-200
2e5v A:1-6,139-148,149-158,190-200
3nyc A:1005-1010,1171-1178,1179-1186,1199-1211
2gm2 A:13-19,31-37,38-42,98-113
2h92 A:29-34,62-69,71-78,101-119
2h92 B:29-34,62-69,71-78,101-119
2h92 C:29-34,62-69,71-78,101-119
3ef6 A:3-9,79-86,87-93,243-250
2wdr I:9-14,163-173,175-186,220-230
2wdr A:9-14,163-173,175-186,220-230
2wdr E:9-14,163-173,175-186,220-230
3qwt D:202-206,212-217,218-222,227-246
3k5i D:68-73,186-198,248-259,286-297
3k5i B:68-73,186-198,248-259,286-297
3k5i C:68-73,186-198,248-259,286-297
2czg B:84-89,208-221,273-284,312-323
2czg A:84-89,208-221,273-284,312-323
3q6j B:45-50,158-162,164-169,317-326
3q6j A:45-50,158-162,164-169,317-326
2qa1 A:4-9,118-127,128-136,156-163
2wog B:152-165,182-187,193-198,314-326
2wog A:152-165,182-187,193-198,314-326
2wog C:153-165,182-187,193-198,314-321
3jsk D:81-86,182-192,210-220,255-265
3jsk L:81-86,182-192,210-220,255-265
3jsk B:81-86,182-192,210-220,255-265
3jsk P:81-86,182-192,210-220,255-265
3jsk I:81-86,182-192,210-220,255-265
3jsk M:81-86,182-192,210-220,255-265
3jsk H:81-86,182-192,210-220,255-265
3jsk G:81-86,182-192,210-220,255-265
3jsk A:81-86,182-192,210-220,255-265
3jsk O:81-86,182-192,210-220,255-265
3djd A:5-13,186-194,195-203,217-225
3djd B:8-13,186-194,195-203,217-226
3ae4 A:21-26,176-186,187-198,232-242
1yqz A:2-8,78-86,89-97,242-250
1yqz B:2-8,78-86,89-97,242-250
2r46 B:2-6,333-342,344-352,354-374
3sm8 A:1005-1010,1171-1178,1179-1186,1199-1211
1zp0 A:21-26,176-186,187-198,232-242
2dwc A:84-89,208-221,273-284,312-323
2dwc B:84-89,208-221,273-284,312-323
3p4p M:6-11,154-164,165-176,210-220
3p4p A:6-11,154-164,165-176,210-220
3kd9 B:4-10,80-87,88-95,245-253
3kd9 C:4-10,80-87,88-95,245-253
3kd9 A:4-10,80-87,88-95,245-253
2y6q D:18-23,138-146,147-154,172-180
2y6q B:18-23,138-146,147-154,172-180
2y6q C:18-23,138-146,147-154,172-180
2y6q A:18-23,138-146,147-154,172-180
1yq4 A:20-25,175-185,186-197,231-241
3po7 B:6-11,234-240,244-250,265-273
3ae5 A:21-26,176-186,187-198,232-242
3aea A:21-26,176-186,187-198,232-242
3ryh A:2-10,53-57,59-63,114-130
2h88 N:20-25,175-185,186-197,231-241
2h88 A:20-25,175-185,186-197,231-241
3da1 A:20-25,190-200,201-212,228-240
2bac A:8-13,225-233,234-241,255-263
2o0a A:442-450,505-511,512-518,598-611
2wp9 A:9-14,163-173,175-186,220-230
2wp9 I:9-14,163-173,175-186,220-230
2wp9 E:9-14,163-173,175-186,220-230
3ept B:8-13,135-145,146-156,176-183
3ept A:8-13,135-145,146-156,176-183
2pyx B:7-13,196-204,206-214,232-240
2pyx A:7-13,196-204,206-214,232-240
2yg3 B:7-12,234-242,243-250,265-273
2yg3 A:7-12,234-242,243-250,265-273
2gry A:333-344,357-361,367-371,480-487
3ryf A:2-10,53-57,59-63,114-130
2wu2 I:9-14,163-173,175-186,220-230
2wu2 E:9-14,163-173,175-186,220-230
2wu2 A:9-14,163-173,175-186,220-230
2xdo D:18-23,138-146,147-154,172-180
2xdo B:18-23,138-146,147-154,172-180
2xdo C:18-23,138-146,147-154,172-180
2xdo A:18-23,138-146,147-154,172-180
3pt5 A:110-121,128-134,138-145,150-168
2y6r D:18-23,138-146,147-154,172-180
2y6r A:18-23,138-146,147-154,172-180
3lov A:4-10,256-263,264-271,285-294
2feo A:31-35,68-72,79-83,106-122
3p4s M:6-11,154-164,165-176,210-217
3p4s A:6-11,154-164,165-176,210-220
2wdv I:9-14,163-173,175-186,220-230
2wdv A:9-14,163-173,175-186,220-230
2wdv E:9-14,163-173,175-186,220-230
3ae7 A:21-26,176-186,187-198,232-242
2weu B:3-9,194-201,205-212,230-238
2weu C:3-9,194-201,205-212,230-238
2weu D:3-9,194-202,204-212,230-238
2weu A:3-9,194-202,204-212,230-238
3k5h B:68-73,186-198,248-259,286-297
3k5h C:68-73,186-198,248-259,286-297
3k5h A:68-73,186-198,248-259,286-297
2b9w A:8-13,225-233,234-241,255-263
2heh A:395-406,419-425,427-433,542-549
3ae6 A:21-26,176-186,187-198,232-242
3gyj A:12-17,247-257,259-270,290-305
3iwa A:3-9,85-94,95-104,259-266
3ae2 A:21-26,176-186,187-198,232-242
2p0a A:91-98,128-135,137-144,177-188
2p0a B:91-99,128-135,137-144,177-188
2p0a B:160-166,288-299,347-357,377-397
2wes A:3-9,194-202,204-212,230-238
2wes D:4-9,194-202,204-212,230-238
2wes B:3-9,194-202,204-212,230-238
2wes C:3-9,194-202,204-212,230-238
3h38 A:56-62,104-108,114-118,121-129
3d1c A:5-10,108-117,118-125,274-281
2h89 A:20-25,175-185,186-197,231-241
2wqy A:20-25,175-185,186-197,231-241
2wqy N:20-25,175-185,186-197,231-241
3ad9 B:22-27,194-203,204-212,225-237
3ad9 A:129-134,201-209,211-219,383-391
2rgo A:20-25,194-204,205-216,232-244
2rgo B:20-25,194-202,208-215,232-244
2r0g B:8-13,135-145,146-156,176-183
2r0g A:8-13,135-145,146-156,176-183
3nwn A:134-146,166-172,173-179,295-302
3ad7 A:129-134,201-209,211-219,383-391
3ad7 B:22-27,194-203,204-212,225-237
2dki A:34-39,163-172,179-189,211-218
2r4j B:5-10,169-179,180-190,206-219
2r4j A:5-10,169-179,180-190,206-219
2xfu A:6-11,234-240,244-250,265-273
2x2r C:153-165,182-187,193-198,314-324
2x2r A:152-165,182-187,193-198,314-326
2x2r B:153-165,182-187,193-198,314-327
2vvg B:135-148,161-166,170-175,290-297
1rp0 B:41-46,141-150,151-160,195-205
2acz A:9-14,163-173,175-186,220-230
2fja C:2024-2029,2173-2182,2188-2197,2241-2251
2fja A:24-29,173-182,188-197,241-251
2fjd C:2024-2029,2173-2182,2188-2197,2241-2251
2fjd A:24-29,173-182,188-197,241-251
2fje C:2024-2029,2173-2182,2188-2197,2241-2251
2fje A:24-29,173-182,188-197,241-251
3e22 D:2-10,53-57,59-63,108-130
2fjb C:2024-2029,2173-2182,2188-2197,2241-2251
2fjb A:24-29,173-182,188-197,241-251