List of the counted superfamily hits for pattern ID: 686 (enumeration index: query103.104) of S5

List of the counted superfamily hits for pattern ID: 686 (enumeration index: query103.104) of S5

SCOP superfamily ID superfamiily description corresponding fold description
c.51.1Class II aaRS ABD-related Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
c.51.3B12-dependent dehydatase associated subunit Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
c.51.5CinA-like Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
d.123.1Sporulation response regulatory protein Spo0B Histidine kinase-like fold lacking the kinase ATP-binding site ! Sporulation response regulatory protein Spo0B core: alpha-beta-alpha-beta(2)-(alpha)-beta(2)
d.315.1TRCF domain-like TRCF domain-like beta-alpha(3)-beta(2)-alpha-beta(2)-alpha; 2 layers: alpha/beta; mixed beta sheet, order 12354, strands 1 and 2 are parallel; some topological similarity to the DCoH-like fold (scop_cf 55247)
d.204.1Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue) beta-alpha-beta(3)-alpha; 2 layers; mixed sheet 1234, strand 3 is antiparallel to the rest
c.88.1Glutaminase/Asparaginase Glutaminase/Asparaginase consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each ! Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5 ! Domain 2 has parallel beta-sheet of 4 strands, order 1234
d.261.1Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
d.65.1Hedgehog/DD-peptidase zinc-binding motif ! Hedgehog/DD-peptidase alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta
d.341.1Peptidoglycan deacetylase N-terminal noncatalytic region Peptidoglycan deacetylase N-terminal noncatalytic region consists of two different domains, d1: [alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; mixed beta-sheet, order 12345, strands 2 and 3 are parallel to each other with a left-handed crossover connection], d2: alpha-beta(3)-alpha; 2 layers; antiparallel beta-sheet, order 123]
c.51.2TolB, N-terminal domain Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
c.51.4ITPase-like formerly Maf/Ham1; elaborated with additional structures inserted in the common fold ! Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
c.51.6XCC0632-like short crossover loop between strands 2 and 3; the antiparallel part of the beta-sheet (strands 3, 4 and 5) and the C-terminal helix are quite longAnticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
d.103.1CytB endotoxin-like CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a