1. c.60.1 Phosphoglycerate mutase-like
Phosphoglycerate mutase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
1fbt d1fbta_ A:1-7,116-134,135-141,169-178,179-188
1c7z d1c7zb_ B:2-8,117-135,136-142,170-179,180-189
1tip d1tipb_ B:2-8,117-135,136-142,170-179,180-189
3bif d3bifa2 A:249-255,372-383,383-389,417-426,427-436
1ebb d1ebba_ A:2-9,122-142,143-150,180-188,189-194
1c7z d1c7za_ A:2-8,125-136,136-142,170-179,180-189
1c80 d1c80b_ B:2-8,125-136,136-142,170-179,180-189
1tip d1tipa_ A:2-8,125-136,136-142,170-179,180-189
2bif d2bifb2 B:249-255,372-383,383-389,417-426,427-436
1k6m d1k6ma2 A:251-257,374-385,385-391,419-428,429-438
2bif d2bifa2 A:249-255,372-383,383-389,417-426,427-436
1k6m d1k6mb2 B:251-257,374-385,385-391,419-428,429-438
1bif d1bifa2 A:249-255,372-383,383-389,417-426,427-436
1c81 d1c81a_ A:251-257,374-384,385-391,419-427,430-438
1c80 d1c80a_ A:2-8,125-136,136-142,170-179,180-189
1h2e d1h2ea_ A:2-10,122-142,143-150,178-188,189-194
1h2f d1h2fa_ A:2-10,122-142,143-150,178-188,189-194
2hpa d2hpab_ B:2001-2012,2226-2246,2250-2256,2278-2290,2291-2301
1nd5 d1nd5d_ D:3000-3011,3225-3245,3249-3255,3277-3289,3290-3300
2hpa d2hpaa_ A:1001-1012,1226-1246,1250-1256,1278-1290,1291-1301
2hpa d2hpac_ C:3001-3012,3226-3246,3250-3256,3278-3290,3291-3301
1fbt d1fbtb_ B:1-7,124-134,135-141,169-178,179-188
1cvi d1cvic_ C:3001-3012,3226-3246,3250-3256,3278-3290,3291-3301
1cvi d1cvid_ D:4001-4012,4226-4246,4250-4256,4278-4290,4291-4301
1sk9 d1sk9a_ A:47-60,286-306,331-337,380-392,397-404
1cvi d1cvib_ B:2001-2012,2226-2246,2250-2256,2278-2290,2291-2301
1cvi d1cvia_ A:1001-1012,1226-1246,1250-1256,1278-1290,1291-1301
2hpa d2hpad_ D:4001-4012,4226-4246,4250-4256,4278-4290,4291-4301
1skb d1skba_ A:47-60,286-306,331-337,380-392,397-404
1qwo d1qwoa_ A:47-60,286-306,331-337,380-392,397-404
1sk8 d1sk8a1 A:47-60,286-306,331-337,380-392,397-404
2hia d2hiaa1 A:1-9,109-124,127-132,152-160,162-169
1nd5 d1nd5a_ A:1-12,226-246,250-256,278-290,291-301
1ska d1skaa_ A:47-60,286-306,331-337,380-392,397-404
1rpa d1rpaa_ A:1-12,226-245,250-256,278-290,291-301
1v37 d1v37a_ A:1-10,109-124,127-132,152-160,162-169
1v37 d1v37b_ B:1-10,109-124,127-132,152-160,162-169
1nd6 d1nd6d_ D:3000-3011,3225-3245,3249-3255,3277-3289,3290-3300
1nd6 d1nd6b_ B:1000-1011,1225-1245,1249-1255,1277-1289,1290-1300
1nd6 d1nd6a_ A:1-12,226-246,250-256,278-290,291-301
1nd5 d1nd5c_ C:2000-2011,2225-2245,2249-2255,2277-2289,2290-2300
1nd6 d1nd6c_ C:2000-2011,2225-2245,2249-2255,2277-2289,2290-2300
1rpt d1rpta_ A:1-12,226-245,250-256,278-290,291-301
1nt4 d1nt4a_ A:6-19,262-277,282-288,316-329,330-342
1dkn d1dkna_ A:5-17,268-281,296-302,329-342,343-355
1dkm d1dkma_ A:5-17,268-281,296-302,329-342,343-355
1dko d1dkoa_ A:5-17,268-281,296-302,329-342,343-355
1dkp d1dkpa_ A:5-17,268-281,296-302,329-342,343-355
1dkq d1dkqa_ A:5-17,268-281,296-302,329-342,343-355
1dkl d1dklb_ B:5-17,268-281,296-302,329-342,343-355
1dkl d1dkla_ A:5-17,268-281,296-302,329-342,343-355
1nt4 d1nt4b_ B:1007-1017,1262-1277,1282-1288,1318-1329,1330-1342
1ihp d1ihpa_ A:47-64,286-306,331-337,380-392,397-404
1nd5 d1nd5b_ B:1000-1015,1224-1244,1248-1254,1276-1288,1289-1299
1qfx d1qfxb_ B:51-67,284-305,311-317,357-372,376-385
1qfx d1qfxa_ A:51-67,284-305,311-317,357-372,376-385
2. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1fy2 d1fy2a_ A:2-7,101-113,114-120,194-200,201-207
1fye d1fyea_ A:1-7,101-113,114-120,194-200,202-207
3. d.320.1 YojJ-like
YojJ-like alpha-beta-X-beta-alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; 7-stranded mixed beta-sheet, order 2431567; strands 1 and 3 are parallel to each other
2fb5 d2fb5c1 C:92-100,119-128,136-142,179-187,191-197
2fb5 d2fb5a1 A:92-100,119-128,136-142,179-187,191-197
2fb5 d2fb5b1 B:92-100,119-128,136-142,179-187,191-197
4. d.104.1 Class II aaRS and biotin synthetases
Class II aaRS and biotin synthetases contains large mixed beta-sheet
1usy d1usyd_ D:123-132,173-187,219-224,235-245,246-259
1usy d1usya_ A:123-132,173-187,219-224,235-245,246-259
1usy d1usyc_ C:123-132,173-187,219-224,235-245,246-259
1usy d1usyb_ B:123-132,173-187,219-224,235-245,246-259
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 723 (enumeration index: query1042.1043) of S5
2p79 A:1-9,109-125,127-132,152-160,162-169
2p79 B:1-9,109-124,127-132,152-160,162-169
2eoa B:1-9,109-124,127-132,152-160,162-169
2eoa A:1-10,109-125,127-132,152-160,162-169
2ikq A:373-380,534-557,558-564,596-605,610-614
2ikq M:373-380,534-557,558-564,596-605,610-614
2ikq B:373-380,534-557,558-564,597-605,610-614
3c21 B:36-44,64-75,76-82,120-128,132-138
3c21 A:36-44,64-75,77-82,120-128,132-138
3e9d A:1-11,124-148,176-182,217-231,232-247
3e9d B:1-11,124-148,176-182,217-231,232-247
3d6a D:358-366,520-540,544-550,582-593,594-600
3d6a B:358-366,520-540,543-550,582-593,594-600
3d6a C:358-366,520-540,543-550,582-593,594-600
3d6a A:358-366,520-540,544-550,582-593,594-600
3ll4 A:6-13,140-166,169-175,234-243,249-254
3ll4 B:6-13,140-166,169-175,234-243,249-254
3e9c B:2-11,124-148,176-182,217-231,232-247
3e9c A:1-11,124-148,176-182,217-231,232-247
3it2 A:6-18,231-248,253-259,281-293,294-303
3it2 B:6-18,231-248,253-259,281-293,294-303
2p6o A:1-9,109-125,127-132,152-160,162-169
2i1v B:246-252,369-380,380-386,414-423,424-433
3eoz B:21-28,113-141,147-154,181-190,194-204
3eoz A:20-28,129-140,147-154,183-191,193-198
2owd A:1-9,109-124,127-132,152-160,162-169
1ujb A:1-9,84-99,101-107,130-140,142-151
2owe A:1-9,109-124,127-132,152-160,162-169
3db1 B:358-366,520-540,543-550,582-592,595-600
3db1 A:358-366,520-540,543-550,582-592,595-600
3db1 C:358-366,520-540,543-550,582-592,595-600
3db1 D:358-366,520-540,543-550,582-592,595-600
2gfi A:62-74,302-323,328-334,374-386,387-396
2gfi B:62-74,302-323,328-334,374-386,387-396
2ekb A:1-9,109-125,127-132,152-160,162-169
2ekb B:1-9,109-124,127-132,152-160,162-169
2dwp A:246-252,369-380,380-386,414-423,424-433
3dcy A:0-11,124-150,189-197,232-246,250-260
3c23 B:36-44,64-75,76-82,120-128,132-138
3c23 A:36-44,64-75,76-82,120-128,132-138
3fjy B:188-197,274-293,295-300,334-346,347-358
3fjy A:188-196,274-293,295-300,335-346,347-358
3hjg A:2-12,119-138,140-146,176-187,189-195
3hjg B:2-11,119-138,140-146,176-187,189-195
3o0t B:95-105,192-215,220-229,256-266,268-278
3o0t A:96-105,193-215,221-229,256-266,268-273
2wnh B:13-25,263-276,283-289,317-330,331-343
2wnh A:12-25,263-276,283-289,317-330,332-343
3c1z A:36-44,64-75,76-82,120-128,132-138
3c1z B:36-44,64-75,76-82,120-128,132-138
3c1y B:35-44,64-75,76-82,120-129,132-138
3c1y A:36-44,64-75,76-82,120-128,132-138
2p9f A:1-9,109-125,127-132,152-160,162-169
3it0 B:6-22,231-248,253-259,281-293,294-303
3it0 A:6-22,231-248,253-259,281-293,294-303
3d4i B:358-366,520-540,543-550,582-592,595-600
3d4i C:359-366,520-540,544-550,582-592,595-600
3d4i A:358-366,520-540,543-550,582-593,594-600
3d4i D:358-366,520-540,544-550,582-593,594-600
3it3 B:6-22,231-248,253-259,281-293,294-303
3it3 A:6-22,231-248,253-259,281-293,294-303
2enw A:1-9,109-125,127-132,152-160,162-169
2enw B:1-9,109-124,127-132,152-160,162-169
2dwo A:246-252,369-380,380-386,414-423,424-433
3e9e A:1-11,124-148,176-182,217-231,232-242
3e9e B:2-11,124-148,176-182,217-231,232-247
2p9z B:1-10,109-124,127-132,152-160,162-169
2p9z A:1-10,109-125,127-132,152-160,162-169
3k4p A:47-64,286-306,331-337,380-392,397-404
3k4p B:47-64,286-306,331-337,380-392,397-404
2h0q B:373-381,534-557,558-564,596-605,610-614
2h0q A:373-380,534-557,558-564,596-605,610-614
2h0q C:373-380,534-557,558-564,596-605,610-614
2wni D:13-25,263-276,283-289,317-330,331-343
2wni C:13-25,263-276,283-289,317-330,331-343
2wni A:13-25,263-276,283-289,317-330,331-343
2wni B:13-25,263-276,283-289,317-330,331-343
3r7a A:10-18,147-170,171-178,201-211,212-222
3r7a B:9-18,147-170,170-178,201-211,212-222
2ekz B:1-9,109-124,127-132,152-160,162-169
2ekz A:1-9,109-125,127-132,152-160,162-169
3hri D:203-211,256-270,304-309,319-328,334-342
2pa0 A:1-10,109-125,127-132,152-160,162-169
3lg2 B:6-13,140-166,169-175,234-243,249-254
3lg2 C:6-13,140-166,169-175,234-243,249-254
3lg2 A:6-13,140-166,169-175,234-243,249-254
3lg2 D:6-13,140-166,169-175,234-243,249-254
2axn A:246-252,369-380,380-386,414-423,424-433
3f3k A:6-13,140-166,169-175,234-243,249-254
3f3k B:6-13,140-166,169-175,234-243,249-254
3p9e O:1237-1245,1263-1289,1291-1296,1346-1358,1359-1368
3p9e G:1237-1245,1263-1289,1291-1296,1346-1358,1359-1368
3en0 B:7-14,111-124,126-132,202-209,211-218
3en0 C:8-14,111-124,126-132,202-209,211-218
3en0 A:7-14,111-124,126-132,202-209,211-218
3d8h A:20-27,184-193,195-200,230-237,239-247
3d8h B:20-27,184-193,195-200,230-237,239-247
3it1 B:6-18,231-248,253-259,281-293,294-303
3it1 A:6-18,231-248,253-259,281-293,294-303
2p77 A:1-10,109-125,127-132,152-160,162-169
2p77 B:1-9,109-124,127-132,152-160,162-169
1ujc A:1-8,84-99,101-107,130-140,142-151
3p9d O:237-245,263-289,291-296,346-358,359-368
3p9d G:237-245,263-289,291-296,346-358,359-368
1v7q A:1-9,109-124,127-132,152-160,162-169
3oi7 C:6-13,140-166,169-175,234-243,249-254
3oi7 A:6-13,140-166,169-175,234-243,249-254
3oi7 B:6-13,140-166,169-175,234-243,249-254
3oi7 D:6-13,140-166,169-175,234-243,249-254
3mbk A:373-380,534-554,558-564,596-607,608-614
3mbk B:373-380,534-554,558-564,596-607,608-614
3mxo B:96-105,191-215,221-229,256-266,268-273
3mxo A:95-105,195-215,220-229,256-266,268-273
3k4q B:47-64,286-306,331-337,380-392,397-404
3k4q A:47-64,286-306,331-337,380-392,397-404
3f2i E:1-8,85-98,103-109,134-142,152-159
3f2i A:1-8,85-98,103-109,134-142,152-159
3f2i F:1-8,85-98,103-109,134-142,152-159
2p78 B:1-9,109-125,127-132,152-160,162-169
2p78 A:1-9,109-124,127-132,152-160,162-169
2rfl F:7-14,95-103,106-112,140-149,158-166
2rfl H:7-14,95-103,106-112,140-149,158-166
2rfl D:7-14,95-103,106-112,140-149,158-166
2rfl E:7-14,91-103,106-112,140-149,158-166
2rfl B:7-14,91-103,106-112,140-149,158-167
2rfl A:7-14,95-103,106-112,140-148,159-166
2rfl C:7-14,91-103,106-112,140-148,159-167
2rfl G:7-14,91-103,106-112,140-148,159-166
2enu B:1-9,109-124,127-132,152-160,162-169
2enu A:1-9,109-125,127-132,152-160,162-169
2wu0 C:13-25,263-276,283-289,317-330,331-343
2wu0 A:13-25,263-276,283-289,317-330,331-343
2wu0 D:13-25,263-275,283-289,317-330,331-343
2wu0 B:13-25,263-276,283-289,317-330,331-343
2a6p A:7-14,118-140,140-146,173-183,184-194
2a6p B:7-14,118-140,140-146,173-183,184-194
2p6m A:1-9,109-125,127-132,152-160,162-169
2p6m B:1-9,109-124,127-132,152-160,162-169
2p75 A:1-9,109-125,127-132,152-160,162-169
2p9y A:1-10,109-125,127-132,152-160,162-169
2p9y B:1-10,109-124,127-132,152-160,162-169
3ntl A:4-17,260-275,280-286,314-327,328-340
3ntl B:5-15,260-275,280-286,315-325,331-340
2p30 A:1-10,109-125,127-132,152-160,162-169
2p2y A:1-9,109-125,127-132,152-160,162-169
3l4e A:2-8,100-112,114-119,189-196,197-204
2p2z B:1-9,109-124,127-132,152-160,162-169
2p2z A:1-9,109-125,127-132,152-160,162-169