1. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1hzo d1hzob_ B:42-52,53-61,217-226,257-267,275-293
2blm d2blmb_ B:42-52,53-61,217-226,257-267,275-295
1hzo d1hzoa_ A:42-52,53-61,217-226,257-267,275-293
2blm d2blma_ A:42-52,53-61,217-226,257-268,275-295
1mbl d1mblb_ B:42-52,53-61,217-226,257-267,275-291
1mbl d1mbla_ A:42-52,53-61,217-225,257-267,275-291
4blm d4blmb_ B:42-52,53-61,217-225,257-267,275-291
1blc d1blca_ A:42-52,53-61,217-225,258-267,275-290
1dy6 d1dy6b_ B:42-52,53-61,217-226,257-268,275-291
1djc d1djca_ A:42-52,53-61,217-225,258-267,275-290
1bsg d1bsga_ A:43-52,53-61,217-226,255-268,275-291
1ghp d1ghpa_ A:42-52,53-61,217-225,258-267,275-290
1pio d1piob_ B:42-52,53-61,217-226,258-267,275-290
1ghm d1ghma_ A:42-52,53-61,217-225,258-267,275-290
1kge d1kgea_ A:42-52,53-61,217-225,258-267,275-290
3blm d3blma_ A:42-52,53-61,217-225,258-267,275-290
1dy6 d1dy6a_ A:41-52,53-61,217-226,257-268,275-291
1dja d1djaa_ A:42-52,53-61,217-225,258-267,275-290
1djb d1djba_ A:42-52,53-61,217-225,258-267,275-290
4blm d4blma_ A:42-52,53-61,217-226,257-268,275-291
1blh d1blha_ A:42-52,53-61,217-225,258-267,275-290
1kgf d1kgfa_ A:42-52,53-61,217-225,258-267,275-290
1pio d1pioa_ A:42-52,53-61,217-225,258-267,275-290
1ome d1omeb_ B:42-52,53-61,217-226,258-267,275-290
1ome d1omea_ A:41-52,53-61,217-225,258-268,275-290
1ghi d1ghia_ A:42-52,53-61,217-225,258-267,275-290
1i2w d1i2wa_ A:42-52,53-61,217-225,257-268,275-290
1i2s d1i2sa_ A:42-52,53-61,217-225,257-268,275-290
1i2w d1i2wb_ B:42-52,53-61,217-225,257-268,275-290
1i2s d1i2sb_ B:42-52,53-61,217-225,257-268,275-290
1o7e d1o7ea_ A:42-52,53-61,217-225,257-267,271-291
1o7e d1o7eb_ B:42-52,53-61,217-226,258-267,271-291
1kgg d1kgga_ A:42-52,53-61,217-226,258-268,275-290
1n4o d1n4ob_ B:42-52,53-61,217-225,258-267,271-291
1n4o d1n4oa_ A:42-52,53-61,217-225,257-267,271-291
1bul d1bula_ A:42-52,53-61,217-226,255-268,275-290
1g6a d1g6aa_ A:43-52,53-61,217-225,255-267,271-292
1bue d1buea_ A:42-52,53-61,217-225,255-268,275-290
1g68 d1g68a_ A:43-52,53-61,217-225,255-267,271-292
1iyo d1iyoa_ A:42-52,53-61,217-225,257-267,275-288
1iys d1iysa_ A:42-52,53-61,217-226,257-267,275-288
1iyq d1iyqa_ A:42-52,53-61,217-225,257-267,275-288
1iyp d1iypa_ A:42-52,53-61,217-225,257-267,275-288
1bza d1bzaa_ A:42-52,53-61,217-225,257-267,275-287
1bt5 d1bt5a_ A:41-52,53-61,217-225,258-267,271-290
3c7v d3c7vc1 C:41-52,53-61,217-225,256-265,269-288
1li9 d1li9a_ A:41-52,53-61,217-225,258-267,271-290
1jwv d1jwva_ A:41-52,53-61,217-225,258-267,271-290
1s0w d1s0wa_ A:41-52,53-61,217-225,256-265,269-288
1jvj d1jvja_ A:41-52,53-61,217-225,258-267,271-290
1jwp d1jwpa_ A:41-52,53-61,217-225,258-267,271-290
1nym d1nyma_ A:41-52,53-61,217-225,258-267,271-290
2b5r d2b5rb1 B:42-52,53-61,217-225,256-265,269-288
1m40 d1m40a_ A:41-52,53-61,217-225,258-267,271-290
1htz d1htzb_ B:42-52,53-61,217-226,258-267,271-290
1li0 d1li0a_ A:41-52,53-61,217-225,258-267,271-290
1s0w d1s0wb_ B:41-52,53-61,217-225,256-265,269-288
1nyy d1nyya_ A:41-52,53-61,217-225,258-267,271-290
2g2w d2g2wa1 A:41-52,53-61,217-225,258-267,271-290
3c7u d3c7uc1 C:41-52,53-61,217-225,256-265,269-288
1lhy d1lhya_ A:41-52,53-61,217-225,258-268,271-290
1htz d1htza_ A:42-52,53-61,217-226,258-267,271-290
1fqg d1fqga_ A:41-52,53-61,217-225,256-266,269-288
2b5r d2b5ra1 A:41-52,53-61,217-225,256-265,269-288
1htz d1htzf_ F:41-52,53-61,217-226,258-267,271-290
1ny0 d1ny0a_ A:41-52,53-61,217-225,258-267,271-290
3c4p d3c4pa1 A:41-52,53-61,217-225,258-267,271-290
2g2u d2g2ua1 A:41-52,53-61,217-225,258-267,271-290
1htz d1htzc_ C:42-52,53-61,217-226,258-267,271-290
1ck3 d1ck3a_ A:41-52,53-61,217-225,258-267,271-290
3c4o d3c4oa1 A:43-52,53-61,217-225,258-269,271-290
1axb d1axba_ A:41-52,53-61,217-225,258-267,271-290
1xpb d1xpba_ A:41-51A,52-61,217-225,258-267,271-290
1zg4 d1zg4a1 A:41-52,53-61,217-225,258-267,271-290
1jtg d1jtgc_ C:41-52,53-61,217-225,256-265,269-288
1erq d1erqa_ A:41-52,53-61,217-225,256-265,269-288
1htz d1htze_ E:42-52,53-61,217-226,258-267,271-290
1tem d1tema_ A:41-52,53-61,217-225,258-267,271-290
1htz d1htzd_ D:42-52,53-61,217-225,258-267,271-290
3c7u d3c7ua1 A:41-52,53-61,217-225,256-265,269-288
1jtg d1jtga_ A:41-52,53-61,217-225,256-265,269-288
1erm d1erma_ A:41-52,53-61,217-225,256-265,269-288
1jtd d1jtda_ A:41-52,53-61,217-225,256-265,269-288
3c7v d3c7va1 A:41-52,53-61,217-225,256-265,269-288
1esu d1esua_ A:41-51A,52-61,217-225,258-267,271-290
1jwz d1jwza_ A:42-52,53-61,217-225,258-268,271-290
1nxy d1nxya_ A:41-52,53-61,217-225,258-267,271-290
1ero d1eroa_ A:41-52,53-61,217-225,256-265,269-288
1btl d1btla_ A:41-52,53-61,217-225,258-267,271-290
2. c.91.1 PEP carboxykinase-like
PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
1ii2 d1ii2b1 B:205-212,214-221,226-233,236-242,430-444
1xkv d1xkvb1 B:216-223,225-232,237-244,247-253,440-454
2pc9 d2pc9b1 B:216-223,225-232,237-244,247-253,440-454
1kkm d1kkma_ A:140-147,148-155,160-172,173-180,272-290
1kkl d1kklb_ B:140-147,148-155,160-172,173-180,272-290
1kkm d1kkmc_ C:140-147,148-155,160-172,173-180,272-290
2pc9 d2pc9c1 C:216-223,225-232,237-244,247-252,440-454
1kkl d1kkla_ A:140-147,148-155,160-172,173-180,272-290
1kkm d1kkmb_ B:140-147,148-155,160-172,173-180,272-290
1kkl d1kklc_ C:140-147,148-155,160-172,173-180,272-290
1oen d1oena1 A:232-239,241-248,253-260,263-269,451-465
1jb1 d1jb1a_ A:140-147,148-155,160-172,173-180,272-290
1ko7 d1ko7b2 B:136-143,144-151,156-168,169-176,268-286
1ko7 d1ko7a2 A:136-143,144-151,156-168,169-176,268-286
1knx d1knxa2 A:139-146,147-154,159-171,172-179,272-290
1j3b d1j3bb1 B:216-223,225-232,237-244,247-252,440-454
1knx d1knxb2 B:139-146,147-154,159-171,172-179,272-290
1knx d1knxd2 D:139-146,147-154,156-171,172-178,272-290
1knx d1knxe2 E:139-146,147-154,156-171,172-178,272-290
1knx d1knxf2 F:139-146,147-154,156-171,172-178,272-290
1knx d1knxc2 C:139-146,147-154,156-171,172-178,272-290
3. e.8.1 DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !
DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
2pyj d2pyjb2 B:282-291,323-329,329-340,343-354,426-449
2pyj d2pyja2 A:282-291,323-329,329-340,343-354,426-449
2py5 d2py5a2 A:282-289,323-329,329-341,344-354,426-449
2py5 d2py5b2 B:282-289,323-329,329-340,344-354,426-449
2pzs d2pzsc2 C:282-289,323-329,329-341,344-354,426-449
2pyl d2pyla2 A:282-289,323-329,329-341,344-354,426-449
2pzs d2pzsb2 B:282-289,323-329,329-341,344-354,426-449
2pzs d2pzsa2 A:282-289,323-329,329-341,344-354,426-449
1xi1 d1xi1a2 A:282-289,323-329,329-341,344-354,426-449
2ex3 d2ex3g2 G:282-289,323-329,329-341,344-354,426-449
1xhz d1xhza2 A:282-289,323-329,329-341,344-354,426-449
4. i.8.1 RNA polymerase
RNA polymerase
1hqm d1hqmd_ D:699-704,712-720,729-737,743-749,764-772
1l9z d1l9zd_ D:699-704,712-720,729-737,743-749,764-772
5. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
1i6v d1i6vd_ D:699-704,712-720,729-737,743-749,764-772
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 640 (enumeration index: query1087) of S5
3bfc B:42-52,53-61,217-225,257-268,275-288
3bfc D:42-52,53-61,217-226,257-267,275-288
3bfc C:42-52,53-61,217-225,257-267,275-288
3bfc A:42-52,53-61,217-226,257-267,275-288
3huo B:42-52,53-61,217-226,255-267,275-290
3huo A:42-52,53-61,217-226,255-267,275-290
2zq8 A:42-52,53-61,217-226,257-267,275-288
3e2k A:42-52,53-61,217-226,257-268,275-291
3e2k B:42-52,53-61,217-226,257-268,275-291
2j7v D:34-44,45-52,203-210,238-251,253-274
2j7v B:34-44,45-52,202-210,238-251,253-275
2j7v A:34-44,45-52,202-210,238-249,253-274
2j7v C:34-44,45-52,202-210,238-249,253-275
3ly4 A:42-52,53-61,217-225,257-267,275-291
2ov5 B:42-52,53-61,217-226,257-268,275-291
2ov5 A:42-52,53-61,217-226,257-268,275-291
2ov5 C:42-52,53-61,217-226,257-268,275-291
3bff B:42-52,53-61,217-226,257-268,275-288
3bff C:42-52,53-61,217-226,257-267,275-288
3bff D:42-52,53-61,217-226,257-268,275-288
3bff A:42-52,53-61,217-226,257-268,275-288
3qhy A:42-52,53-61,219-226,255-268,275-291
3n8s A:57-67,68-75,233-242,270-282,291-307
1ytm B:1225-1231,1236-1242,1247-1254,1257-1263,1445-1459
3m6h A:57-67,68-75,233-242,270-282,291-307
3dw0 A:42-52,53-61,217-226,257-267,275-291
3dw0 B:42-52,53-61,217-226,257-267,275-291
3bfe C:42-52,53-61,217-225,257-267,275-288
3bfe D:42-52,53-61,217-225,257-267,275-288
3bfe B:42-52,53-61,217-226,257-268,275-288
3bfe A:42-52,53-61,217-225,257-267,275-288
3sh7 A:42-52,53-61,217-226,257-268,275-291
3sh7 B:42-52,53-61,217-226,257-268,275-291
1xxm A:43-52,53-61,217-225,256-265,269-288
1xxm B:41-52,53-61,217-225,256-265,269-288
3iqa A:57-67,68-75,233-242,270-282,291-307
3m2j B:42-52,53-61,217-225,257-268,275-291
3m2j A:42-52,53-61,217-226,257-268,275-291
2xqz A:42-52,53-61,217-226,257-268,275-288
3g31 A:42-52,53-61,217-225,257-267,275-290
3g31 B:42-52,53-61,217-225,257-267,275-290
3dtm A:41-52,53-61,217-225,256-265,269-288
3lju X:30-35,36-41,41-52,56-60,101-116
3c5a A:42-52,53-61,217-225,257-268,275-290
3g30 A:42-52,53-61,217-225,257-268,275-290
2jbf D:34-44,46-52,202-210,238-249,253-275
2jbf A:34-44,45-52,202-210,238-249,253-274
2jbf C:34-44,45-52,202-210,238-251,253-274
2jbf B:34-44,45-52,202-210,238-251,253-274
1w7f B:42-52,53-61,217-225,257-268,275-290
1w7f A:42-52,53-61,217-225,257-268,275-290
3nia A:37-46,48-55,212-221,248-260,263-285
3hlw B:42-52,53-61,217-225,257-267,275-290
3hlw A:42-52,53-61,217-225,257-267,275-290
1yly B:42-52,53-61,217-226,257-268,275-290
1yly A:42-52,53-61,217-226,257-267,275-290
3sh9 B:42-52,53-61,217-226,257-268,275-291
3sh9 A:42-52,53-61,217-225,257-268,275-291
3g32 A:42-52,53-61,217-225,257-267,275-290
3g32 B:42-52,53-61,217-225,257-267,275-290
2v20 A:22-32,33-41,197-205,236-245,249-268
3ny4 A:57-67,68-75,233-242,270-282,291-307
3g34 A:42-52,53-61,217-225,257-267,275-290
3g34 B:42-52,53-61,217-225,257-267,275-290
3cmz A:41-52,53-61,217-225,258-267,271-290
3sh8 B:42-52,53-61,217-226,257-268,275-291
3sh8 A:42-52,53-61,217-226,257-267,275-291
1ylz B:42-52,53-61,217-226,257-267,275-290
1ylz A:42-52,53-61,217-226,257-267,275-290
2zq7 A:42-52,53-61,217-226,257-267,275-288
3g2y B:42-52,53-61,217-225,257-267,275-290
3g2y A:42-52,53-61,217-225,255-267,275-290
3feh A:30-35,36-41,41-52,56-60,101-116
2wjv B:133-139,140-146,154-164,167-173,258-273
2wjv A:133-139,140-146,154-164,167-173,258-273
1ym1 B:42-52,53-61,217-226,257-268,275-290
1ym1 A:42-52,53-61,217-226,257-267,275-290
2zqd A:42-52,53-61,217-226,257-267,275-288
3mdb C:30-35,36-41,41-52,56-60,101-116
3mdb D:30-35,36-41,41-52,56-60,101-116
1ylj A:42-52,53-61,217-225,257-267,275-290
2zq9 A:42-52,53-61,217-226,257-267,275-288
3bfg B:42-52,53-61,217-225,257-268,275-288
3bfg D:42-52,53-61,219-226,257-268,275-288
3bfg C:42-52,53-61,217-226,257-267,275-288
1ylw A:42-52,53-61,217-225,257-267,275-290
2wyx A:42-52,53-61,217-226,257-267,275-287
2v1z A:22-32,33-41,197-205,236-245,249-268
3m2k B:42-52,53-61,217-225,257-268,275-291
3m2k A:42-52,53-61,217-226,257-268,275-291
2wk0 B:42-52,53-61,217-225,257-267,275-290
2wk0 A:42-52,53-61,217-225,257-267,275-290
1yms B:42-52,53-61,217-225,257-267,275-290
1yms A:42-52,53-61,217-226,257-267,275-290
3byd A:46-56,57-64,220-228,258-268,276-291
3fm8 C:30-35,36-41,41-52,56-60,101-116
3fm8 D:30-35,37-41,41-52,55-60,101-116
2zqa A:42-52,53-61,217-226,257-267,275-288
3hre B:42-52,53-61,217-226,257-267,275-290
3hre A:42-52,53-61,217-225,257-267,275-290
2wuq B:19-30,31-38,236-245,273-285,291-313
2wuq A:19-30,31-38,236-245,273-285,291-316
3ni9 B:37-46,48-55,212-221,248-260,263-285
3ni9 A:37-46,48-55,212-221,248-260,263-286
3jyi E:41-52,53-61,217-225,256-265,269-288
3jyi F:41-52,53-61,217-225,256-265,269-288
3jyi B:41-52,53-61,217-225,256-265,269-288
3jyi A:41-52,53-61,217-225,256-265,269-288
3jyi D:41-52,53-61,217-225,256-265,269-288
3jyi C:41-52,53-61,217-225,256-265,269-288
2x71 B:42-52,53-61,217-225,257-267,275-290
2x71 A:42-52,53-61,217-225,257-267,275-290
2wjy A:133-139,140-146,154-164,167-173,258-273
1ygg A:232-239,241-248,253-260,263-269,451-465
3ige B:3-15,17-28,28-36,42-49,59-72
3ige A:3-15,17-28,28-36,42-49,59-72
3n4i A:41-52,53-61,217-225,258-267,271-290
3cg5 A:57-67,68-75,233-242,270-282,291-307
3lez A:58-68,69-76,230-238,269-279,287-304
2kdp A:68-72,73-80,86-97,99-103,112-125
3g2z B:42-52,53-61,217-225,257-267,275-290
3g2z A:42-52,53-61,217-225,257-268,275-290
2qpn B:37-46,48-55,212-221,248-260,263-284
2qpn A:37-46,48-55,212-220,248-260,263-285
1ymx A:42-52,53-61,217-226,257-267,275-290
1ymx B:42-52,53-61,217-226,257-267,275-290
3p98 B:42-52,53-61,217-225,257-267,270-289
3p98 A:41-52,53-61,217-225,257-266,270-289
1zg6 A:41-52,53-61,217-225,258-267,271-290
2zqc A:42-52,53-61,217-226,257-268,275-288
1ylh A:232-239,241-248,253-260,263-269,451-465
3p09 A:34-43,48-52,209-217,246-258,267-287
3p09 B:34-43,48-52,209-217,249-258,267-286
2j9o C:34-44,46-52,202-210,238-249,253-274
2j9o B:34-44,45-52,202-210,238-251,253-275
2j9o A:34-44,45-52,202-210,238-249,253-274
2j9o D:34-44,45-52,202-210,238-251,253-276
3ly3 A:42-52,53-61,217-225,257-267,275-291
2j8y D:34-44,46-52,203-210,238-249,253-274
2j8y C:34-44,45-52,202-210,238-249,253-274
2j8y B:34-44,45-52,202-210,238-249,253-274
2j8y A:34-44,45-52,202-210,238-249,253-274
3bfd C:42-52,53-61,217-225,257-268,275-288
3bfd D:42-52,53-61,217-225,257-267,275-288
3bfd A:42-52,53-61,217-225,257-267,275-288
3bfd B:42-52,53-61,217-225,257-267,275-288
3b3x B:42-52,53-61,217-226,257-268,275-290
3b3x A:42-52,53-61,217-225,257-267,275-290
1ylt A:42-52,53-61,217-225,257-267,275-290
3ig9 C:3-14,17-28,28-36,42-49,59-72
3ig9 B:3-14,17-28,28-36,42-49,59-72
3ig9 D:3-15,17-28,28-36,42-49,59-72
3ig9 A:3-15,17-28,28-36,42-49,59-72
3hvf B:42-52,53-61,217-225,257-267,275-290
3hvf A:42-52,53-61,217-226,257-267,275-290
3e2l A:42-52,53-61,217-225,257-268,275-291
3e2l B:42-52,53-61,217-226,257-267,275-291
3m6b A:57-67,68-75,233-242,270-282,291-307
2p74 B:42-52,53-61,217-226,255-267,275-290
2p74 A:42-52,53-61,217-225,257-268,275-290
1ylp A:42-52,53-61,217-226,257-267,275-290
3dwz A:57-67,68-75,233-242,270-282,291-307
3g35 A:42-52,53-61,217-225,257-267,275-290
3g35 B:42-52,53-61,217-225,257-268,275-290
2gdn A:43-53,54-61,217-226,256-268,277-293
1yt4 A:41-52,53-61,217-225,258-267,271-290
3tqf A:16-26,27-34,39-51,52-59,151-179
3tqf B:19-26,27-34,39-51,52-58,151-169
2qmh C:140-147,148-155,160-172,173-179,272-290
2qmh G:140-147,148-155,159-172,173-180,272-290
2qmh J:140-147,148-155,160-172,173-180,272-290
2qmh L:140-147,148-155,160-172,173-179,272-290
2qmh B:140-147,148-155,160-172,173-180,272-290
2qmh H:140-147,148-155,160-172,173-180,272-290
2qmh A:140-147,148-155,159-172,173-180,272-290
2qmh K:140-147,148-155,160-172,173-180,272-290
2qmh E:140-147,148-155,160-172,173-180,272-290
2qmh D:140-147,148-155,160-172,173-180,272-290
2qmh F:137-147,148-155,160-172,173-179,272-290
2qmh I:140-147,148-155,160-172,173-179,272-290
3lvq E:450-455,456-461,461-472,477-481,523-538
2xr0 A:42-52,53-61,217-226,257-267,275-288
3gmw A:41-52,53-61,217-225,256-265,269-288
3gmw C:41-52,53-61,217-225,256-265,269-288
1we4 A:42-52,53-61,217-225,257-267,275-288
1xhx C:282-289,323-329,329-341,344-354,426-449
1xhx B:282-289,323-329,329-341,344-354,426-449
1xhx D:281-289,323-329,329-341,344-354,426-449
1xi1 B:282-289,323-329,329-341,344-354,426-449
1xhz B:282-289,323-329,329-341,344-354,426-449
1xhz C:282-289,323-329,329-341,344-354,426-449
1xhz D:282-289,323-329,329-341,344-354,426-449