1. e.62.1 Heme iron utilization protein-like
Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold
2hq2 d2hq2a1 A:61-69,70-78,96-102,131-139,273-279
2j0r d2j0ra1 A:63-71,72-80,98-105,133-141,276-283
1u9t d1u9ta1 A:61-69,70-78,96-103,131-139,273-280
2j0p d2j0pa1 A:62-71,72-80,98-105,133-141,276-283
2. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1juh d1juhd_ D:71-79,99-108,110-118,118-129,213-219
1y3t d1y3ta1 A:67-75,91-99,102-109,110-120,186-192
1gqh d1gqhd_ D:71-79,99-108,110-118,119-129,213-219
1h1m d1h1md_ D:71-79,99-108,110-118,119-129,213-219
1sef d1sefa_ A:83-92,107-116,115-125,128-139,148-154
1eyb d1eyba_ A:152-160,177-184,187-193,195-204,274-279
1xru d1xrua1 A:73-84,99-109,112-118,123-133,136-143
1xru d1xrub1 B:73-84,99-109,112-118,123-133,136-143
1x8m d1x8me_ E:5075-5086,5101-5111,5114-5120,5125-5135,5138-5145
1x8m d1x8mf_ F:6075-6086,6101-6111,6114-6120,6125-6135,6138-6145
1x8m d1x8ma_ A:1075-1086,1101-1111,1114-1120,1125-1135,1138-1145
1x8m d1x8mc_ C:3075-3086,3101-3111,3114-3120,3125-3135,3138-3145
1x8m d1x8md_ D:4075-4086,4101-4111,4114-4120,4125-4135,4138-4145
1ey2 d1ey2a_ A:152-160,177-184,187-193,195-205,274-279
1ucx d1ucxb1 B:67-76,119-128,129-137,140-149,302-306
1fxz d1fxzb1 B:67-76,119-128,129-137,140-149,302-306
1ywk d1ywkd1 D:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1ywk d1ywke1 E:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1sq4 d1sq4b_ B:89-98,113-121,125-131,134-145,155-161
1ywk d1ywkf1 F:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1ywk d1ywkc1 C:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1ywk d1ywka1 A:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1ud1 d1ud1b1 B:67-76,119-128,129-137,140-149,302-306
1ywk d1ywkb1 B:1075-1082,1099-1107,1110-1116,1121-1131,1134-1142
1x8m d1x8mb_ B:2079-2086,2101-2111,2114-2120,2125-2135,2138-2145
1j1l d1j1la_ A:59-69,87-97,97-107,110-119,126-136
1rc6 d1rc6a_ A:1079-1089,1104-1113,1117-1122,1125-1136,1145-1151
1sq4 d1sq4a_ A:89-98,113-121,126-131,134-145,155-161
1rc6 d1rc6b_ B:1079-1089,1104-1113,1117-1122,1125-1136,1145-1151
1tq5 d1tq5a1 A:60-70,87-97,97-107,111-120,125-134
1fxz d1fxzc1 C:67-76,119-128,129-137,140-149,302-306
1ud1 d1ud1c1 C:67-76,119-127,129-137,140-149,302-306
1zx5 d1zx5a1 A:116-124,163-171,174-179,178-188,217-221
1ucx d1ucxc1 C:67-76,119-128,129-137,140-149,302-306
1gqg d1gqga_ A:70-79,99-109,110-118,119-129,213-219
1gqg d1gqgb_ B:70-79,99-109,110-118,119-129,213-219
1y3t d1y3tb1 B:66-75,91-100,100-109,110-120,186-192
1gqg d1gqgd_ D:70-79,99-109,110-118,119-129,213-219
1gqh d1gqha_ A:70-79,99-109,110-118,119-129,213-219
1h1i d1h1id_ D:70-79,99-109,110-118,119-129,213-219
1h1i d1h1ic_ C:70-79,99-109,110-118,119-129,213-219
1gqg d1gqgc_ C:70-79,99-109,110-118,119-129,213-219
1h1m d1h1ma_ A:70-79,99-109,110-118,119-129,213-219
1od5 d1od5a1 A:64-73,119-128,129-136,139-149,331-335
1h1i d1h1ia_ A:70-79,99-109,110-118,119-129,213-219
1gqh d1gqhb_ B:70-79,99-109,110-118,118-129,213-219
1h1i d1h1ib_ B:70-79,99-109,110-118,119-129,213-219
1gqh d1gqhc_ C:70-79,99-109,110-118,119-129,213-219
1od5 d1od5b1 B:64-73,119-128,129-136,139-149,331-335
1juh d1juha_ A:70-79,99-109,110-118,119-129,213-219
1h1m d1h1mc_ C:70-79,99-109,110-118,119-129,213-219
1juh d1juhb_ B:70-79,99-109,110-118,119-129,213-219
1juh d1juhc_ C:70-79,99-109,110-118,119-129,213-219
1h1m d1h1mb_ B:70-79,99-109,110-118,118-129,213-219
1j58 d1j58a_ A:98-107,129-137,138-146,146-157,226-230
1l3j d1l3ja_ A:98-107,129-137,138-146,146-157,226-230
1uw8 d1uw8a_ A:98-107,129-137,138-146,146-157,226-230
3. f.11.1 Anthrax protective antigen
Anthrax protective antigen 4 domains; I (res. 14-225) and II (226-487) are beta-sandwiches of similar gamma-crystallin like topologies; III (488-594) has a beta-grasp like fold; IV (595-735) has an Ig-like fold
1t6b d1t6bx_ X:17-25,31-39,41-46,61-70,199-206
1acc d1acca_ A:16-26,30-39,41-47,61-70,199-206
4. b.23.3 Acetamidase/Formamidase-like decorated fold with additional structures; contains extra C-terminal alpha+beta subdomain: beta(2)-alpha(2)-beta(2): antiparallel beta-sheet, order 1243 !
CUB-like sandwich, 10 strands in 2 sheets; jelly-roll
2f4l d2f4ld1 D:64-76,155-162,167-177,193-204,207-213
2f4l d2f4lc1 C:65-76,155-162,167-177,191-202,208-213
2f4l d2f4la1 A:64-76,156-162,167-177,193-204,207-213
2f4l d2f4lb1 B:64-76,155-162,167-177,200-204,207-213
2f4l d2f4lb1 B:64-76,155-162,167-177,186-200,207-213
5. b.127.1 Baseplate structural protein gp8
Baseplate structural protein gp8 multisheet protein with a mixture of beta-sandwich and beta-barrel features
1n7z d1n7zd_ D:36-44,76-81,245-255,269-277,295-299
1n7z d1n7zb_ B:36-44,76-81,245-255,269-277,295-299
1n8b d1n8ba_ A:36-44,76-81,245-255,269-277,295-299
1n80 d1n80a_ A:36-44,76-81,245-255,269-277,295-299
1n80 d1n80c_ C:36-44,76-81,245-255,269-277,295-299
1n7z d1n7za_ A:36-44,76-81,245-255,269-277,295-299
1n8b d1n8bc_ C:36-44,76-81,245-256,269-277,295-299
1n8b d1n8bb_ B:36-43,75-81,245-256,267-277,295-299
6. i.19.1 Bacteriophage T4 3D cryo-EM reconstruction
Bacteriophage T4 3D cryo-EM reconstruction
1pdm d1pdmf_ F:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmh_ H:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmb_ B:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmd_ D:36-44,76-81,245-255,269-277,295-299
1pdm d1pdml_ L:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmj_ J:36-44,76-81,245-255,269-277,295-299
1tja d1tjab_ B:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmg_ G:36-44,76-81,245-255,269-277,295-299
1pdm d1pdma_ A:36-44,76-81,245-255,269-277,295-299
1tja d1tjaa_ A:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmi_ I:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmc_ C:36-44,76-81,245-255,269-277,295-299
1pdm d1pdmk_ K:36-44,76-81,245-255,269-277,295-299
1pdm d1pdme_ E:36-44,76-81,245-255,269-277,295-299
7. b.82.4 Regulatory protein AraC
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1xja d1xjaa_ A:40-52,69-77,78-85,89-99,117-121
8. b.82.3 cAMP-binding domain-like
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1zyb d1zyba2 A:57-67,70-80,79-83,96-103,168-175
9. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xn_ N:48-54,78-83,90-98,104-110,114-118
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 139 (enumeration index: query1095.1096) of S5
3b9t D:173-187,322-332,335-344,358-371,384-390
3b9t B:173-187,322-332,335-344,358-371,384-390
3b9t A:173-187,322-332,335-344,358-371,384-390
3b9t C:173-187,322-332,335-344,358-371,384-390
2uya A:98-107,129-137,138-146,146-157,226-230
2vqa A:106-114,136-142,146-152,155-165,235-239
2vqa C:107-114,136-142,143-152,155-165,235-239
2vqa B:106-114,136-142,143-152,156-165,235-239
2uy9 A:98-107,129-137,138-146,146-157,226-230
3tez A:18-25,31-39,41-47,61-70,199-206
3pjy A:95-104,106-117,122-127,130-137,149-153
2oh5 A:34-44,46-56,57-64,106-115,207-216
2zs6 B:414-420,463-473,476-483,490-497,506-512
2vec A:61-70,88-94,100-106,108-121,129-135
1wce F:99-114,163-168,347-356,359-372,412-416
2fhd A:364-370,376-381,403-409,412-416,475-479
2fhd A:364-370,376-381,381-387,412-416,475-479
2uyb A:98-107,129-137,138-146,146-157,226-230
3ehk F:67-76,178-187,186-196,198-208,358-362
3ehk A:67-76,178-187,186-196,198-208,358-362
3ehk C:67-76,178-187,186-196,198-208,358-362
3ehk B:67-76,178-187,186-196,198-208,358-362
3ehk D:67-76,178-187,186-196,198-208,358-362
3ehk E:67-76,178-187,186-196,198-208,358-362
3mhz A:18-25,31-39,41-47,61-70,199-206
2oh6 A:34-44,46-56,57-64,106-115,207-216
2cb6 G:94-100,139-146,157-161,164-174,196-202
2cb6 P:94-100,139-146,157-161,164-174,196-202
2cb6 K:94-100,139-146,157-161,164-174,196-202
2cb6 J:94-100,139-146,157-161,164-174,196-202
2cb6 F:94-100,139-146,157-161,164-174,196-202
2cb6 E:94-100,139-146,157-161,164-174,196-202
2cb6 I:94-100,139-146,157-161,164-174,196-202
2cb6 D:94-100,139-146,157-161,164-174,196-202
2cb6 C:94-100,139-146,157-161,164-174,196-202
2cb6 B:94-100,139-146,157-161,164-174,196-202
2cb6 H:94-100,139-146,157-161,164-174,196-202
2cb6 N:94-100,139-146,157-161,164-174,196-202
2cb6 A:94-100,139-146,157-161,164-174,196-202
2cb6 O:94-100,139-146,157-161,164-174,196-202
2cb6 L:94-100,139-146,157-161,164-174,196-202
2cb6 M:94-100,139-146,157-161,164-174,196-202
2d5f A:64-73,119-128,129-136,139-149,331-335
2d5f B:64-73,119-128,129-136,139-149,331-335
3tew A:18-25,31-39,41-47,61-70,199-206
2qqp C:226-240,436-441,489-500,502-515,549-553
3gbg A:28-37,56-64,63-75,77-87,113-119
3fz3 B:87-96,199-207,206-216,218-228,378-382
3fz3 D:87-95,198-207,206-216,218-228,378-382
3fz3 C:87-96,198-207,207-216,219-228,378-382
3fz3 A:87-96,198-207,207-216,218-228,378-382
3fz3 E:87-96,198-207,207-216,218-228,378-382
3fz3 F:87-96,199-207,206-216,218-228,378-382
3ksc F:65-74,116-125,126-134,137-146,322-326
3ksc B:65-74,116-125,126-134,137-146,322-326
3ksc C:65-74,116-125,126-134,137-146,322-326
3ksc E:65-74,116-125,126-134,137-146,322-326
2ii1 A:70-84,162-172,175-185,199-210,217-222
2ii1 D:70-84,162-172,175-185,199-210,217-222
2ii1 C:70-84,162-172,175-185,199-210,217-222
2ii1 B:70-84,162-172,175-185,199-210,217-222
2evx A:82-91,134-142,141-150,153-163,286-290
1xgf A:64-73,119-128,129-137,139-149,331-336
2zoe B:414-420,463-473,476-483,490-497,506-512
2h0v A:66-75,91-100,100-109,110-120,186-192
2h0v B:66-75,91-100,100-109,110-120,186-192
3kgl E:62-71,152-160,161-168,171-181,287-291
3kgl D:62-71,152-160,161-168,171-181,287-291
3kgl B:62-71,152-160,161-169,172-181,287-291
3kgl F:62-71,151-160,161-169,172-181,287-291
3kgl C:62-71,152-160,161-169,171-181,287-291
3kgl A:62-71,152-160,161-169,172-181,287-291
3o14 B:61-70,82-91,90-100,99-109,117-123
3o14 A:61-70,82-91,90-100,99-109,116-123
3c3v A:87-96,152-161,162-170,173-182,356-360
3mp8 A:1129-1134,1143-1150,1164-1168,1182-1186,1209-1213
3tex A:18-25,31-39,41-47,61-70,199-206
2e9q A:82-91,134-142,141-151,153-163,286-290
2p17 A:58-68,85-95,95-104,108-117,124-134
2oh7 A:34-44,46-56,57-64,106-115,207-216
2uy8 A:98-107,129-137,138-146,146-157,226-230
2wkn C:84-96,231-240,243-253,269-281,291-296
2wkn F:83-96,231-241,244-253,269-281,291-296
2wkn A:83-96,231-241,244-253,269-281,291-296
2wkn D:84-96,231-240,243-253,269-281,291-296
2wkn G:84-96,231-240,243-253,269-281,291-296
2wkn H:84-96,231-240,243-253,269-281,291-296
2wkn B:84-96,231-240,243-253,269-281,291-296
2wkn E:84-96,231-240,243-253,269-281,291-296
3oqq A:43-48,56-63,67-76,79-88,141-153
3tey A:18-26,30-39,41-47,61-70,199-206
2qjv A:46-56,83-91,90-100,100-111,116-122
2qjv B:46-56,83-91,90-100,100-111,116-122
2qdr A:109-118,129-139,139-144,151-161,182-188
2qdr B:109-118,129-139,139-144,151-161,182-188
3tkk B:71-85,163-173,176-186,197-211,217-223
3tkk A:71-85,163-173,176-186,197-211,217-223
3tkk C:71-85,163-173,176-186,197-211,217-223
3acl A:59-68,87-97,97-107,110-119,126-136
2k6a A:15-23,28-34,36-41,42-48,58-62