1. d.350.1 YcgL-like
YcgL-like beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet, order:3124
2h7a d2h7aa1 A:14-22,26-32,41-49,50-59,81-87
2. d.375.1 NE1680-like
NE1680-like beta(2)-alpha-beta-alpha-beta; 2 layers, a/b; antiparallel sheet, order 3124
2hfq d2hfqa1 A:1-12,16-25,28-44,54-63,76-82
3. d.252.1 CheC-like
CheC-like duplication: tandem repeat of two intertwined alpha-beta-(X)-beta(2) motifs
1squ d1squb_ B:41-51,53-60,61-74,110-122,144-152
1xko d1xkob_ B:41-51,52-61,61-74,110-122,144-154
1squ d1squa_ A:41-51,53-61,61-74,110-122,144-152
1xko d1xkoa_ A:41-51,53-61,61-74,110-122,144-152
1squ d1squb_ B:41-51,53-60,82-108,110-122,144-152
1xko d1xkoa_ A:41-51,53-61,82-105,110-122,144-152
1xkr d1xkra_ A:59-70,72-80,103-130,132-144,180-190
2f9z d2f9za1 A:59-70,72-80,103-130,132-144,180-190
1xko d1xkob_ B:41-51,52-61,82-108,110-122,144-154
1squ d1squa_ A:41-51,53-61,82-108,110-122,144-152
2f9z d2f9zb1 B:59-70,72-80,103-130,132-144,180-190
4. c.97.1 Cytidine deaminase-like contains extra C-terminal strand 5, order 21345 !
Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
1pl0 d1pl0b2 B:260-267,268-276,297-311,316-323,439-447
1pkx d1pkxa2 A:260-267,268-276,297-311,316-323,439-447
1p4r d1p4ra2 A:260-267,268-276,297-311,316-323,439-447
1pl0 d1pl0d2 D:260-267,268-276,297-311,316-323,439-447
1pkx d1pkxc2 C:260-267,268-276,297-311,316-323,439-447
1thz d1thza2 A:261-268,269-277,298-312,317-324,440-448
1thz d1thzb2 B:261-268,269-277,298-312,317-324,440-448
1oz0 d1oz0a2 A:261-268,269-277,298-312,317-324,440-448
1m9n d1m9na2 A:261-268,269-277,298-312,317-324,440-448
1g8m d1g8mb2 B:261-268,269-277,298-312,317-324,440-448
1pkx d1pkxd2 D:260-267,268-276,297-311,316-323,439-447
1g8m d1g8ma2 A:261-268,269-277,298-312,317-324,440-448
1m9n d1m9nb2 B:261-268,269-277,298-312,317-324,440-448
1pkx d1pkxb2 B:260-267,268-276,297-311,316-323,439-447
1pl0 d1pl0a2 A:260-267,268-276,297-311,317-323,439-447
1p4r d1p4rb2 B:260-267,268-276,297-311,317-323,439-447
1zcz d1zczb2 B:217-224,225-233,235-248,253-259,364-372
1oz0 d1oz0b2 B:261-268,269-277,298-312,318-323,440-448
1pl0 d1pl0c2 C:260-267,268-276,297-311,317-322,439-447
1zcz d1zcza2 A:217-224,225-233,235-248,254-259,364-372
5. b.129.1 AbrB/MazE/MraZ-like members of this superfamily are known or predicted to have DNA-binding function !
Double-split beta-barrel pseudobarrel; capped on both ends by alpha-helices
1n0e d1n0ea_ A:53-61,63-69,69-84,101-106,135-141
1n0f d1n0fc_ C:53-61,63-69,69-84,101-106,135-141
1n0f d1n0ff_ F:53-61,63-69,69-84,101-106,135-141
1n0f d1n0fa_ A:53-61,63-69,69-84,101-106,135-141
1n0f d1n0fd_ D:53-61,63-69,69-84,101-106,135-141
1n0f d1n0fb_ B:53-61,63-69,69-84,101-106,135-141
1n0f d1n0fh_ H:53-61,63-69,69-84,101-106,136-141
1n0e d1n0eh_ H:53-61,63-69,69-84,101-106,136-141
1n0g d1n0gb_ B:53-61,63-69,69-84,101-106,136-141
1n0g d1n0ga_ A:53-61,63-69,69-84,101-106,136-141
1n0e d1n0ed_ D:53-61,63-69,69-84,101-106,136-141
1n0e d1n0ef_ F:53-61,63-69,69-84,101-106,136-141
1n0e d1n0eb_ B:53-61,63-69,69-84,101-106,136-141
1n0e d1n0ee_ E:53-61,63-69,69-84,101-106,136-141
1n0e d1n0ec_ C:53-61,63-69,69-84,101-106,136-141
1n0f d1n0fe_ E:53-61,63-69,69-84,101-106,136-141
1n0e d1n0eg_ G:53-61,63-69,69-84,101-106,136-141
1n0f d1n0fg_ G:53-61,63-69,69-84,102-106,136-141
6. e.39.1 YebC-like
YebC-like 3 domains: (1) 3-helical bundle; (2 and 3 ) alpha+beta of different folds: domain 3 has a ferredoxin-like fold and is inserted in domain 2
1lfp d1lfpa_ A:82-92,94-104,105-121,121-125,230-238
1mw7 d1mw7a_ A:78-88,90-100,101-117,118-122,231-238
7. d.166.1 ADP-ribosylation
ADP-ribosylation unusual fold
1wfx d1wfxa_ A:93-100,118-123,124-137,138-145,162-167
2jqn d2jqna1 A:2-9,33-38,38-51,55-63,78-85
2o0p d2o0pa1 A:2-9,33-38,41-51,56-63,78-85
2o0q d2o0qa1 A:2-9,33-38,41-51,56-63,78-85
2a5g d2a5gb1 B:3-10,59-64,65-78,81-90,112-116
1s5c d1s5ca_ A:3-10,58-64,65-78,81-90,111-117
1tii d1tii.1 A:1-8,56-62,63-76,79-88,109-115
1lts d1lts.1 A:4-10,58-64,65-78,81-89,112-117
1ltb d1ltb.1 A:4-10,58-64,65-78,81-89,112-117
1htl d1htl.1 A:4-10,58-64,65-78,81-89,112-117
1lt4 d1lt4a_ A:4-10,58-64,65-78,81-89,112-117
1ltt d1ltt.1 A:4-10,58-64,65-78,81-89,112-117
1lti d1lti.1 A:4-10,58-64,65-78,81-89,112-117
1zm4 d1zm4f1 F:433-443,468-473,474-484,496-505,550-557
1lta d1lta.1 A:3-10,58-64,65-78,81-90,112-117
1ltg d1ltg.1 A:4-10,58-64,65-78,81-89,112-117
1ikq d1ikqa2 A:433-443,468-473,474-484,496-505,550-557
1zm2 d1zm2d1 D:433-443,468-473,474-484,496-505,550-557
1zm3 d1zm3b1 B:433-443,468-473,474-483,496-505,550-557
1zm4 d1zm4b1 B:433-443,468-473,474-484,496-505,550-557
1dma d1dmab_ B:433-443,468-473,474-482,496-505,549-557
1zm9 d1zm9f1 F:433-443,468-473,474-484,496-505,550-557
1zm9 d1zm9b1 B:433-443,468-473,474-483,496-505,550-557
1s5e d1s5eb_ B:3-10,58-64,65-78,81-90,112-117
1zm3 d1zm3f1 F:433-443,468-473,474-483,496-505,550-557
1s5f d1s5fa_ A:3-10,58-64,65-78,81-90,112-117
1s5e d1s5ea_ A:3-10,58-64,65-78,81-90,112-117
1dma d1dmaa_ A:433-443,468-473,474-484,496-505,551-557
1zm3 d1zm3d1 D:433-443,468-473,474-484,496-505,550-557
1lt3 d1lt3a_ A:4-10,58-64,65-78,81-89,112-117
1s5d d1s5da_ A:3-10,58-64,65-78,81-90,112-117
2a5f d2a5fb1 B:3-10,58-64,65-78,81-90,112-117
1zm4 d1zm4d1 D:433-443,468-473,474-483,496-505,550-557
1ikp d1ikpa2 A:433-443,468-473,474-483,496-505,550-557
1s5b d1s5ba_ A:3-10,58-64,65-78,81-90,112-117
1aer d1aera_ A:433-443,468-473,474-484,496-505,551-557
1xtc d1xtc.1 A:3-10,58-64,65-78,81-90,112-117
1zm2 d1zm2f1 F:433-443,468-473,474-483,496-505,550-557
2a5d d2a5db1 B:3-10,58-64,65-78,81-90,112-117
1r45 d1r45d_ D:121-131,170-177,178-185,186-196,212-219
1prt d1prta_ A:5-13,50-55,56-78,82-93,128-133
1prt d1prtg_ G:5-12,50-55,56-78,82-93,128-133
1r45 d1r45c_ C:121-131,170-177,178-185,186-196,212-219
1r4b d1r4bb_ B:121-131,170-177,178-185,186-196,212-219
1r45 d1r45a_ A:121-131,170-177,178-185,186-196,212-219
1r45 d1r45b_ B:121-131,170-177,178-185,186-196,212-219
1r4b d1r4ba_ A:121-131,170-177,178-185,186-196,212-219
1pto d1ptoa_ A:5-12,49-55,56-78,82-93,128-134
1pto d1ptog_ G:5-12,49-55,56-78,82-93,128-134
1bcp d1bcpg_ G:5-12,49-55,56-78,82-93,128-134
1bcp d1bcpa_ A:5-12,49-55,56-78,82-93,128-134
8. b.138.1 Hydrophobin II, HfbII
Hydrophobin II, HfbII core: barrel, closed; n=4, S=8; complex topology; helix-containing crossover connection
2pl7 d2pl7b1 B:9-16,24-28,35-47,48-54,57-61
1r2m d1r2mb_ B:9-16,24-28,35-47,48-54,57-61
2b97 d2b97b1 B:9-16,24-28,35-47,48-54,57-61
2pl7 d2pl7a1 A:9-16,24-28,35-47,48-54,57-61
2b97 d2b97a1 A:9-16,24-28,35-47,48-54,57-61
1r2m d1r2ma_ A:9-16,24-28,35-47,48-54,57-61
9. d.343.1 MM3350-like
MM3350-like beta(2)-alpha-beta(4); antiparallel beta-sheet; order: 216534; similar to a ubiquitin-like fold with the extra C-terminal strand inserted in the middle of the beta-sheet
2i1s d2i1sa1 A:6-16,22-30,33-46,110-123,130-137
2i1s d2i1sb1 B:6-16,22-30,33-46,110-123,130-137
10. d.135.1 The spindle assembly checkpoint protein mad2 N- and C-termini undergo large conformational rearrangement upon ligand binding !
The spindle assembly checkpoint protein mad2 core: alpha(2)-beta(2)-alpha-beta; mixed sheet: order 213
1go4 d1go4a_ A:80-92,93-107,120-142,148-159,190-200
1go4 d1go4c_ C:80-92,93-107,120-142,148-159,190-201
1go4 d1go4b_ B:80-92,93-107,120-142,148-159,190-201
2v64 d2v64f1 F:80-92,93-107,120-142,148-158,190-201
2v64 d2v64a1 A:80-92,93-107,120-142,148-158,190-201
2v64 d2v64c1 C:80-92,93-107,120-142,148-158,190-201
1go4 d1go4d_ D:80-92,93-107,120-143,148-159,190-201
1klq d1klqa_ A:82-93,97-109,122-145,150-160,192-203
1s2h d1s2ha_ A:81-92,93-107,119-143,148-157,190-201
11. c.68.1 Nucleotide-diphospho-sugar transferases
Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
1yp4 d1yp4b2 B:179-188,190-198,200-208,225-230,268-274
1yp2 d1yp2b2 B:179-188,190-198,200-208,225-230,268-274
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 581 (enumeration index: query1097.1098) of S5
1z2o X:131-138,147-154,154-161,163-170,204-210
2hw2 A:17-22,47-53,53-64,70-80,97-103
3qta B:59-68,72-80,101-128,136-142,174-185
3qta A:58-69,72-80,101-128,131-142,174-185
2iu3 B:261-268,269-277,298-312,317-324,440-448
2iu3 A:261-268,269-277,298-312,317-324,440-448
3mq3 A:53-62,66-76,77-97,118-122,199-210
3zzm A:277-284,285-293,296-309,315-320,435-443
3zzm B:277-284,285-293,296-309,315-320,435-443
3hkv A:881-889,917-922,923-930,939-950,986-991
3hkv B:881-889,917-922,923-930,939-951,986-991
2yin B:1340-1350,1358-1366,1370-1383,1402-1411,1480-1493
2yin A:1340-1349,1358-1366,1370-1383,1404-1411,1480-1493
3qqt A:9-16,24-28,35-47,48-54,58-62
2fgt A:66-73,74-79,81-96,124-130,205-213
2qb5 B:152-159,168-174,174-181,183-190,227-231
3a18 A:29-34,141-147,152-160,160-165,316-327
3a18 D:29-34,141-147,152-160,160-165,316-327
3a18 C:29-34,141-147,152-160,160-164,316-327
3a18 B:29-34,141-147,152-160,160-165,316-327
3iic B:41-51,52-62,82-108,111-122,143-154
3iic A:41-51,52-62,82-108,115-122,143-154
2wmn A:152-162,170-180,183-200,222-230,292-305
3hzh B:42-51,54-62,62-75,116-126,148-158
3hzh B:42-51,54-62,83-113,116-126,148-158
3n3c A:53-62,66-76,77-97,118-123,199-210
3abd A:79-90,92-105,114-138,143-153,196-207
3abd B:79-90,92-105,114-137,143-153,196-207
3hm4 A:44-53,55-64,82-110,113-124,145-155
3hm4 A:44-53,55-64,65-77,113-124,145-155
3hm4 B:44-54,56-64,65-77,112-124,145-155
3hm4 B:44-54,56-64,82-110,112-124,145-155
2b1g C:261-268,269-277,298-312,317-324,440-448
2b1g B:261-268,269-277,298-312,317-324,440-448
2b1g A:261-268,269-277,298-312,317-324,440-448
2b1g D:261-268,269-277,298-312,318-324,440-448
3a15 C:29-34,141-147,152-160,160-165,316-327
3a15 B:29-34,141-147,152-159,160-165,316-327
3a15 D:29-34,141-147,152-159,160-165,316-327
3h2d B:41-51,52-62,63-75,111-122,143-153
3h2d B:41-51,52-62,82-108,111-122,143-153
3h2d A:41-51,52-62,63-75,110-122,143-153
3h2d A:41-51,52-62,82-108,110-122,143-153
3a17 D:29-34,141-147,152-160,160-164,316-327
3a17 E:29-34,141-147,152-160,160-165,316-327
3a17 G:29-34,141-147,152-160,160-165,316-327
3a17 H:29-34,141-147,152-160,160-164,316-327
3a17 C:29-34,141-147,152-160,160-165,316-327
3a17 A:29-34,141-147,152-160,160-165,316-327
3a17 B:29-34,141-147,152-160,160-164,316-327
3a17 F:29-34,141-147,152-160,160-164,316-327
2q7d B:152-159,168-174,174-181,183-190,227-231
3btp A:348-354,363-370,371-379,395-400,459-463
1z2n X:131-138,147-154,154-161,163-170,204-210
1zy7 B:351-360,365-374,394-417,439-448,597-604
1zy7 A:351-360,365-374,394-417,439-448,597-604
3abe C:79-90,92-104,112-137,143-153,196-207
2wm9 A:152-162,170-180,183-200,222-230,292-305
2odt X:152-158,168-174,174-182,183-190,227-231
2pnq A:53-62,66-76,77-97,118-123,199-210
2pnq B:53-62,66-76,77-97,118-123,199-210
2qyf A:81-92,93-107,120-142,148-157,190-201
2qyf C:81-92,93-106,120-142,148-157,190-201
2iu0 B:261-268,269-277,298-312,318-324,440-448
2iu0 A:261-268,269-277,298-312,317-324,440-448
3soh C:99-108,113-119,144-171,173-182,206-216
3soh A:99-108,113-119,144-171,173-182,206-217
1z2p X:131-138,147-154,154-161,163-170,204-210
2hp7 A:99-108,113-119,144-171,173-182,206-216
2b1i A:261-268,269-277,298-312,318-324,440-448
2b1i B:261-268,269-277,298-312,317-324,440-448
3g5b A:691-703,708-719,720-735,742-749,789-799
3g5b A:691-703,708-719,720-735,735-739,789-799
3gmh E:80-92,93-107,120-142,148-158,190-201
3gmh C:80-92,93-107,120-142,148-158,190-201
3gmh G:80-92,93-107,120-142,148-158,190-201
3gmh I:80-92,93-107,120-142,148-158,190-201
3gmh A:80-92,93-107,120-142,148-158,190-201
3gmh K:80-92,93-107,120-142,148-158,190-201
3h4y A:44-53,56-64,82-110,113-124,145-155
3h4y A:44-53,56-64,65-77,113-124,145-155
2x5y A:782-791,817-822,823-831,837-846,875-880
2vfx E:80-92,93-107,120-143,148-158,190-201
2vfx L:80-92,93-107,120-142,148-158,190-201
2vfx B:80-92,93-107,120-143,148-158,190-201
2vfx G:80-92,93-107,120-143,148-158,190-201
2vfx K:80-92,93-107,120-143,148-158,190-201
2vfx I:80-92,93-107,120-143,148-158,190-201
2vfx C:80-92,93-107,120-143,148-158,190-201
2vfx D:81-92,93-107,120-142,148-158,190-201
2vfx J:81-92,93-107,120-143,148-158,190-201
2vfx H:80-92,93-107,120-143,148-158,190-201
2vfx A:80-92,93-107,120-143,148-158,190-201
2vfx F:80-92,93-107,120-143,148-158,190-201
3a16 D:29-34,141-147,152-160,160-165,316-327
3a16 B:29-34,141-147,152-160,160-165,316-327
3a16 C:29-34,141-147,152-160,160-165,316-327
3a16 A:29-34,141-147,152-160,160-165,316-327
2wmo A:152-162,170-180,183-200,222-230,292-305
3hk0 A:150-159,160-166,171-179,182-190,283-290
3hk0 B:150-159,160-166,171-179,183-190,283-289
4a1o B:277-284,285-293,296-309,314-320,435-443
4a1o A:277-284,285-293,296-309,315-320,435-443