2. c.39.1 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567 1jhp d1jhpa_ A:178-192,230-239,240-257,259-263,264-279 1jhm d1jhma_ A:178-192,230-239,240-257,259-263,264-279 1jha d1jhaa_ A:178-192,230-239,240-257,259-263,264-279 1jhu d1jhua_ A:178-192,230-239,240-257,259-263,264-279 1jhy d1jhya_ A:178-192,230-239,240-257,259-263,264-279 1l4l d1l4la_ A:178-192,230-239,240-257,259-263,264-279 1l4k d1l4ka_ A:178-192,230-239,240-257,259-263,264-279 1jhq d1jhqa_ A:178-192,230-239,240-257,259-263,264-279 1l5n d1l5na_ A:178-192,230-239,240-257,259-263,264-279 1l4g d1l4ga_ A:178-192,230-239,240-257,259-263,264-279 1jhx d1jhxa_ A:178-192,230-239,240-257,259-263,264-279 1l4e d1l4ea_ A:178-192,230-239,240-257,259-263,264-279 1jh8 d1jh8a_ A:178-192,230-239,240-257,259-263,264-279 1l5f d1l5fa_ A:178-192,230-239,240-257,259-263,264-279 1l4h d1l4ha_ A:178-192,230-239,240-257,259-263,264-279 1l4f d1l4fa_ A:178-192,230-239,240-257,259-263,264-279 1l4b d1l4ba_ A:178-192,230-239,240-257,259-263,264-279 1l4m d1l4ma_ A:178-192,230-239,240-257,259-263,264-279 1jhv d1jhva_ A:178-192,230-239,240-257,259-263,264-279 1l4n d1l4na_ A:178-192,230-239,240-257,259-263,264-279 1jho d1jhoa_ A:178-192,230-239,240-257,259-263,264-279 1l5l d1l5la_ A:178-192,230-239,240-257,259-263,264-279 1jhr d1jhra_ A:178-192,230-239,240-257,259-263,264-279 1l5k d1l5ka_ A:178-192,230-239,240-257,259-263,264-279 1l5o d1l5oa_ A:178-192,230-239,240-257,259-263,264-279 1d0s d1d0sa_ A:178-192,230-239,240-257,259-263,264-279 1l5m d1l5ma_ A:178-192,230-239,240-257,259-263,264-279 1d0v d1d0va_ A:178-192,230-239,240-257,259-263,264-279 1j33 d1j33a_ A:166-180,217-226,227-244,246-250,251-266 1j33 d1j33a_ A:166-180,217-226,251-266,271-276,280-291 1l4g d1l4ga_ A:178-192,230-239,264-279,284-290,293-304 1l4n d1l4na_ A:178-192,230-239,264-279,284-289,293-304 1l5n d1l5na_ A:178-192,230-239,264-279,284-288,293-304 1l5m d1l5ma_ A:178-192,230-239,264-279,284-290,293-304 1l4e d1l4ea_ A:178-192,230-239,264-279,284-288,293-304 1l5f d1l5fa_ A:178-192,230-239,264-279,284-288,293-304 1l4b d1l4ba_ A:178-192,230-239,264-279,284-288,293-304 1jhm d1jhma_ A:178-192,230-239,264-279,284-288,293-304 1l4k d1l4ka_ A:178-192,230-239,264-279,284-288,293-304 1l5o d1l5oa_ A:178-192,230-239,264-279,284-288,293-304 1jhq d1jhqa_ A:178-192,230-239,264-279,284-288,293-304 1d0s d1d0sa_ A:178-192,230-239,264-279,284-288,293-304 1jhp d1jhpa_ A:178-192,230-239,264-279,284-288,293-304 1l4l d1l4la_ A:178-192,230-239,264-279,284-288,293-304 1d0v d1d0va_ A:178-192,230-239,264-279,284-288,293-304 1l4h d1l4ha_ A:178-192,230-239,264-279,284-288,293-304 1jh8 d1jh8a_ A:178-192,230-239,264-279,284-288,293-304 1l4f d1l4fa_ A:178-192,230-239,264-279,284-288,293-304 1l5l d1l5la_ A:178-192,230-239,264-279,284-288,293-304 1jhx d1jhxa_ A:178-192,230-239,264-279,284-288,293-304 1l4m d1l4ma_ A:178-192,230-239,264-279,284-288,293-304 1jhu d1jhua_ A:178-192,230-239,264-279,284-288,293-304 1jho d1jhoa_ A:178-192,230-239,264-279,284-288,293-304 1jhy d1jhya_ A:178-192,230-239,264-279,284-288,293-304 1jhv d1jhva_ A:178-192,230-239,264-279,284-288,293-304 1jha d1jhaa_ A:178-192,230-239,264-279,284-288,293-304 1l5k d1l5ka_ A:178-192,230-239,264-279,284-288,293-304 1jhr d1jhra_ A:178-192,230-239,264-279,284-288,293-304 5. c.142.1 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 2fug d2fugj2 J:38-48,49-61,71-80,87-93,110-126 2fug d2fugs2 S:38-49,49-61,71-80,87-93,110-126 2fug d2fuga2 A:38-49,49-61,71-80,87-93,110-126 2fug d2fug12 1:38-49,49-61,71-80,87-93,110-126 12. d.133.1 Molybdenum cofactor-binding domain duplication: consists of 4 structural repeats arranged in 2 lobes ! contains one left-hand beta-alpha-beta unit per lobe ! Molybdenum cofactor-binding domain beta(2)-alpha-beta-alpha-beta; 2 layers: a/b; mixed sheet: order 1243: crossing loops 1rm6 d1rm6a2 A:359-381,383-392,409-423,434-446,723-745 1sb3 d1sb3d2 D:359-381,383-392,409-423,434-446,723-745 1rm6 d1rm6d2 D:359-381,383-392,409-423,434-446,723-745 1vlb d1vlba4 A:534-556,558-567,583-593,610-624,874-888 1jro d1jroh2 H:344-365,367-376,412-426,443-457,727-752 1sb3 d1sb3a2 A:359-381,383-392,409-423,434-446,723-745 1jrp d1jrph2 H:344-365,367-376,413-426,443-457,727-752 1sij d1sija4 A:534-556,558-567,583-593,610-624,874-888 1jrp d1jrpf2 F:344-365,367-376,413-426,443-457,727-752 1jro d1jrof2 F:343-365,367-376,412-426,443-457,727-752 1jro d1jrob2 B:343-365,367-376,412-426,443-457,727-752 1jro d1jrod2 D:343-365,367-376,413-426,443-457,727-752 1jrp d1jrpd2 D:343-365,367-376,413-426,443-457,727-752 1jrp d1jrpb2 B:343-365,367-376,413-426,443-457,727-752 1vlb d1vlba4 A:534-556,558-567,592-607,610-624,874-888 1sij d1sija4 A:534-556,558-567,592-607,610-624,874-888 1vdv d1vdvb5 B:914-935,937-946,962-976,993-1007,1258-1286 1zxi d1zxib2 B:391-411,413-422,442-455,476-491,761-785 1vdv d1vdva5 A:914-935,937-946,962-976,993-1007,1258-1287 1n5w d1n5wb2 B:391-411,413-422,442-455,476-491,761-785 1n5w d1n5we2 E:391-411,413-422,442-455,476-491,761-785 1n62 d1n62b2 B:391-411,413-422,442-455,476-491,760-785 1n62 d1n62e2 E:391-411,413-422,442-455,476-491,760-785 1n60 d1n60b2 B:391-411,413-422,442-455,476-491,760-785 1n60 d1n60e2 E:391-411,413-422,442-455,476-491,760-785 1n61 d1n61b2 B:391-411,413-422,442-455,476-491,760-785 1n63 d1n63b2 B:391-411,413-422,442-455,476-491,760-785 1n61 d1n61e2 E:391-411,413-422,442-455,476-491,760-785 1n63 d1n63e2 E:391-411,413-422,442-455,476-491,760-785 1ffu d1ffue2 E:388-408,410-419,439-452,470-485,754-776 1ffv d1ffve2 E:388-408,410-419,439-452,470-485,754-776 1ffv d1ffvb2 B:388-408,410-419,439-452,470-485,754-776 1t3q d1t3qb2 B:372-394,396-405,425-438,453-467,741-765 1n5x d1n5xa5 A:914-935,937-946,962-976,993-1008,1258-1286 1n5x d1n5xb5 B:914-935,937-946,962-976,993-1008,1258-1286 3b9j d3b9jc2 C:913-935,937-946,962-976,993-1008,1259-1286 1ffu d1ffub2 B:388-408,410-419,439-452,470-485,754-776 1fo4 d1fo4b5 B:914-935,937-946,962-976,993-1008,1258-1286 1t3q d1t3qe2 E:372-394,396-405,425-438,453-467,741-765 1fo4 d1fo4a5 A:914-935,937-946,962-976,993-1008,1258-1287 1v97 d1v97b5 B:913-935,937-946,962-976,993-1008,1258-1286 1dgj d1dgja4 A:536-558,560-569,585-609,612-626,866-888 1v97 d1v97a5 A:913-935,937-946,962-976,993-1008,1258-1287 1fiq d1fiqc2 C:914-935,937-946,962-976,993-1008,1258-1287 1jrp d1jrph2 H:344-365,367-376,426-442,443-457,727-752 1jrp d1jrpf2 F:344-365,367-376,426-442,443-457,727-752 1jro d1jrof2 F:343-365,367-376,426-442,443-457,727-752 1jro d1jroh2 H:344-365,367-376,426-442,443-457,727-752 1jrp d1jrpd2 D:343-365,367-376,426-442,443-457,727-752 1jro d1jrob2 B:343-365,367-376,426-442,443-457,727-752 1jrp d1jrpb2 B:343-365,367-376,426-442,443-457,727-752 1jro d1jrod2 D:343-365,367-376,426-442,443-457,727-752 1n62 d1n62b2 B:391-411,413-422,455-473,476-491,760-785 1zxi d1zxib2 B:391-411,413-422,455-473,476-491,761-785 1n62 d1n62e2 E:391-411,413-422,455-473,476-491,760-785 1n5w d1n5wb2 B:391-411,413-422,455-473,476-491,761-785 1n60 d1n60b2 B:391-411,413-422,455-473,476-491,760-785 1n5w d1n5we2 E:391-411,413-422,455-473,476-491,761-785 1n60 d1n60e2 E:391-411,413-422,455-473,476-491,760-785 1n61 d1n61e2 E:391-411,413-422,455-473,476-491,760-785 1n63 d1n63b2 B:391-411,413-422,455-473,476-491,760-785 1n61 d1n61b2 B:391-411,413-422,455-473,476-491,760-785 1n63 d1n63e2 E:391-411,413-422,455-473,476-491,760-785 1vdv d1vdva5 A:914-935,937-946,976-992,993-1007,1258-1287 1vdv d1vdvb5 B:914-935,937-946,976-992,993-1007,1258-1286 1ffu d1ffue2 E:388-408,410-419,452-467,470-485,754-776 3b9j d3b9jc2 C:913-935,937-946,976-992,993-1008,1259-1286 1n5x d1n5xb5 B:914-935,937-946,976-992,993-1008,1258-1286 1n5x d1n5xa5 A:914-935,937-946,976-992,993-1008,1258-1286 1fo4 d1fo4a5 A:914-935,937-946,976-992,993-1008,1258-1287 1fo4 d1fo4b5 B:914-935,937-946,976-992,993-1008,1258-1286 1v97 d1v97b5 B:913-935,937-946,976-992,993-1008,1258-1286 1v97 d1v97a5 A:913-935,937-946,976-992,993-1008,1258-1287 14. c.8.2 LeuD/IlvD-like contains mixed beta-sheet barrel, closed n=7, S=10 ! The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it 2b3y d2b3ya1 A:708-716,715-723,751-763,765-772,780-791 2b3y d2b3yb1 B:708-716,715-723,751-763,765-772,780-791 2b3x d2b3xa1 A:708-716,715-723,751-763,765-772,780-791 1b0j d1b0ja1 A:72-87,582-590,615-627,629-636,644-655 1ami d1amia1 A:72-87,582-590,615-627,629-636,644-655 7acn d7acna1 A:72-87,582-590,615-627,629-636,644-655 1fgh d1fgha1 A:72-87,582-590,615-627,629-636,644-655 1amj d1amja1 A:72-87,582-590,615-627,629-636,644-655 1aco d1acoa1 A:72-87,582-590,615-627,629-636,644-655 8acn d8acna1 A:72-87,582-590,615-627,629-636,644-655 1b0k d1b0ka1 A:72-87,582-590,615-627,629-636,644-655 5acn d5acna1 A:72-87,582-590,615-627,629-636,644-655 1nis d1nisa1 A:72-87,582-590,615-627,629-636,644-655 6acn d6acna1 A:72-87,582-590,615-627,629-636,644-655 1nit d1nita1 A:72-87,582-590,615-627,629-636,644-655 1b0m d1b0ma1 A:72-87,582-590,615-627,629-636,644-655 1c97 d1c97a1 A:72-87,582-590,615-627,629-636,644-655 1c96 d1c96a1 A:72-87,582-590,615-627,629-636,644-655 2b3y d2b3ya1 A:86-108,715-723,751-763,765-772,780-791 2b3x d2b3xa1 A:86-108,715-723,751-763,765-772,780-791 2b3y d2b3yb1 B:86-108,715-723,751-763,765-772,780-791