List of the counted superfamily hits for pattern ID: 784 (enumeration index: query1111) of S5

List of the counted superfamily hits for pattern ID: 784 (enumeration index: query1111) of S5

SCOP superfamily ID superfamiily description corresponding fold description
d.94.1HPr-like HPr-like beta-alpha-beta(2)-alpha-beta-alpha; 2 layers: a/b; antiparallel sheet 1423
d.58.17HMA, heavy metal-associated domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.89.1Origin of replication-binding domain, RBD-like Origin of replication-binding domain, RBD-like alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
d.58.3Protease propeptides/inhibitors Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.28Peptide methionine sulfoxide reductase common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.4Dimeric alpha+beta barrel dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.62Ribosomal protein L10-like consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tailFerredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
c.131.1Peptidyl-tRNA hydrolase II Peptidyl-tRNA hydrolase II 3 layers: a/b/a; mixed beta-sheet of 4 strands, order 2143, strand 4 is antiparallel to the rest
d.58.10Acylphosphatase/BLUF domain-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.2Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.14Ribosomal protein S6 Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.296.1YktB/PF0168-like YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634)
d.51.1Eukaryotic type KH-domain (KH-domain type I) Prokaryotic and eukaryotic domains share a KH-motif but have different topologies ! Eukaryotic type KH-domain (KH-domain type I) beta-alpha(2)-beta(2)-alpha; 2 layers: alpha/beta
d.185.1LuxS/MPP-like metallohydrolase Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues ! LuxS/MPP-like metallohydrolase core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
d.58.18ACT-like regulatory domain linked to a wide range of metabolic enzymes ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.86.1eIF4e-like eIF4e-like beta(2)-alpha-beta(2)-alpha-beta(2)-alpha-beta-2; 2 layers: alpha/beta; antiparallel sheet: 21356478
d.237.1Hypothetical protein YjiA, C-terminal domain Hypothetical protein YjiA, C-terminal domain beta-alpha-beta(4)-alpha; 2 layers: a/b; antiparallel sheet 15234; topological similarity to the HPr-like fold
d.58.26GHMP Kinase, C-terminal domain common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
e.8.1DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain ! DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
d.74.1PCD-like has additional alpha helix at the N-terminus ! DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
d.58.19Bacterial exopeptidase dimerisation domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.8Viral DNA-binding domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
c.67.1PLP-dependent transferases PLP-dependent transferase-like main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
d.58.24CheY-binding domain of CheA Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.382.1PSTPO5379-like PSTPO5379-like complex fold; consists of two alpha+beta subdomains, one is inserted in the other
d.58.36Nitrite/Sulfite reductase N-terminal domain-like duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.308.1THUMP domain-like predicted RNA-binding function ! THUMP domain contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel
d.41.4Ribosomal protein L16p/L10e alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
d.64.2TM1457-like forms a homodimer via alpha-helical interface ! eIF1-like beta(2)-alpha-beta(2)-alpha-beta; 2 layers: alpha/beta; mixed beta-sheet: order 51243
d.58.38Urease metallochaperone UreE, C-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.156.1S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase duplication of beta-alpha-beta(4)-alpha-beta-alpha-beta(2) motif; 4 layers a/b/b/a; antiparallel beta-sheets: order 23451687
d.58.7RNA-binding domain, RBD Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.41.1CO dehydrogenase molybdoprotein N-domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
d.58.6Nucleoside diphosphate kinase, NDK Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.11EF-G C-terminal domain-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.42N-utilization substance G protein NusG, N-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.265.1Pseudouridine synthase the active site is the most conserved structural region of the superfamily and is located between the subdomains ! Pseudouridine synthase consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
d.256.1Ta1353-like Ta1353-like core: beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 51423;
d.41.3Pyrimidine nucleoside phosphorylase C-terminal domain alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
d.250.1Folate-binding domain some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase ! Folate-binding domain duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands
d.58.16PAP/Archaeal CCA-adding enzyme, C-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.5GlnB-like form timeric structures with the orthogonally packed beta-sheets ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.198.1Type III secretory system chaperone-like Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta
d.58.55DOPA-like probable biological unit is homodimer; the extra C-terminal strand, adjacent and antiparallel to strand 4, contributes to the dimerisation interface ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.199.1DNA-binding C-terminal domain of the transcription factor MotA MotA C-terminal domain-like alpha-beta(4)-alpha-beta(2)-alpha; 2 layers: alpha/beta
d.139.1PurM C-terminal domain-like PurM C-terminal domain-like 3 layers: alpha/beta/alpha; partial topological similarity to the ferredoxin-like fold
d.161.1ADC synthase the active site is formed by additional structures inserted into the core structure ! ADC synthase duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets
d.129.3Bet v1-like contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix ! TBP-like beta-alpha-beta(4)-alpha
d.58.44Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains duplication: the N- and C-terminal halves of the whole proteins are structurally similar; each half contains two domains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.74.5PH0987 N-terminal domain-like DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
c.74.1AraD/HMP-PK domain-like AraD/HMP-PK domain-like 3 layers: a/b/a; mixed (mostly antiparallel) beta-sheet of 9 strands, order 432159876; left-handed crossover between strands 4 and 5
b.38.4Dom34/Pelota N-terminal domain-like Sm-like fold core: barrel, open; n*=4, S*=8; meander; SH3-like topology
d.58.31Methyl-coenzyme M reductase subunits each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
b.153.1PheT/TilS domain contains putative tRNA-binding structural motif ! PheT/TilS domain core: 3 layers; contains beta-sandwich of unusual topology
d.58.39Glutamyl tRNA-reductase catalytic, N-terminal domain common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.58TTP0101/SSO1404-like contains extra C-terminal beta-strand that integrates into the beta-sheet of the other subunit in the homodimer, a probable biological unit of this superfamily ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.32FAD-linked oxidases, C-terminal domain duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.23Probable ACP-binding domain of malonyl-CoA ACP transacylase Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
e.38.1Release factor Release factor 4 domains: (1) 3-helical bundle; (2) alpha+beta of ferredoxin-like fold (3 and 4) alpha+beta of dsRDB-like fold
d.58.48MTH1187/YkoF-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.56CcmK-like contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.306-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.57Transposase IS200-like contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.128.1Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
d.58.20NAD-binding domain of HMG-CoA reductase Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.315.1TRCF domain-like TRCF domain-like beta-alpha(3)-beta(2)-alpha-beta(2)-alpha; 2 layers: alpha/beta; mixed beta sheet, order 12354, strands 1 and 2 are parallel; some topological similarity to the DCoH-like fold (scop_cf 55247)
d.58.61MTH889-like assembles into hexameric ring-like structures with the formation of a singe beta-barrel sheet of 24 strandsFerredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.74.4GAD domain-like DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
d.94.2Putative transcriptional regulator TM1602, C-terminal domain HPr-like beta-alpha-beta(2)-alpha-beta-alpha; 2 layers: a/b; antiparallel sheet 1423
d.58.34Formiminotransferase domain of formiminotransferase-cyclodeaminase. duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.356.1SP0830-like SP0830-like duplication: two beta-alpha-beta(2)-alpha-beta-alpha motifs are organized in ferredoxin-like subdomains swapped with the extra C-terminal helices
e.51.1Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet
d.41.5Molybdopterin synthase subunit MoaE alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
e.57.1Vacuolar ATP synthase subunit C Vacuolar ATP synthase subunit C 2 alpha+beta (sub)domains [each has a ferredoxin-like fold; scop_cf 54861], connected with 3-helical bundle; duplication: two repeats of beta-alpha-beta-[alpha coiled-coil]-beta-alpha-beta motif
d.41.2Nicotinate/Quinolinate PRTase N-terminal domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
d.58.29Nucleotide cyclase common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.13Anticodon-binding domain of PheRS Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.264.1Prim-pol domain Prim-pol domain consists of two alpha+beta domains
c.43.1CoA-dependent acyltransferases CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
d.58.12eEF-1beta-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.129.4Cell-division protein ZipA, C-terminal domain contains a single copy of this fold ! TBP-like beta-alpha-beta(4)-alpha
d.58.15Ribosomal protein S10 Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.329.1PF0523-like PF0523-like beta-alpha-beta-alpha(3)-beta-alpha-beta-alpha; 3 layers, a/b/a; antiparallel beta-sheet, order 4132; some similarity to the PurM C-terminal domain-like fold (scop_cf 56041)
d.74.2C-terminal domain of arginine repressor forms trimers with three closely packed beta-sheets ! DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
d.58.54YbeD/HP0495-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.40D-ribose-5-phosphate isomerase (RpiA), lid domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
e.39.1YebC-like YebC-like 3 domains: (1) 3-helical bundle; (2 and 3 ) alpha+beta of different folds: domain 3 has a ferredoxin-like fold and is inserted in domain 2
d.197.1Protein-L-isoaspartyl O-methyltransferase, C-terminal domain Protein-L-isoaspartyl O-methyltransferase, C-terminal domain beta-alpha-beta(4)-alpha-beta(2); 3 layers: beta/alpha/beta; buried helix
d.58.25Killer toxin KP6 alpha-subunit Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.201.1SRP19 SRP19 beta-alpha-beta(2)-alpha; 2 layers: alpha/beta
d.258.1Chorismate synthase, AroC Chorismate synthase, AroC duplication: consists of two DCoH-like beta(2)-alpha-beta(2)-alpha structural repeats; 3 layers, beta/alpha/beta
d.58.52Sporulation related repeat duplication: one domain contains two repeats of similar sequence and structure ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.51eIF-2-alpha, C-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.129.5MoaD-related protein, C-terminal domain contains a single copy of this fold ! TBP-like beta-alpha-beta(4)-alpha
d.58.47Hypothetical protein VC0424 Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.59Rnp2-like contains extra C-terminal helixFerredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.64.1eIF1-like eIF1-like beta(2)-alpha-beta(2)-alpha-beta; 2 layers: alpha/beta; mixed beta-sheet: order 51243
d.105.1Subdomain of clathrin and coatomer appendage domain Subdomain of clathrin and coatomer appendage domain beta-alpha-beta-alpha-beta(4)-alpha; 3 layers: a/b/a; bifurcated antiparallel beta-sheet
d.58.22TRADD, N-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.58.27Translational regulator protein regA common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
a.296.1PMT central region-like PMT central region-like multihelical; comprises two four-helical bundles of different topologies and an irregular helical array packed against a small beta-sheet
d.205.1GTP cyclohydrolase I feedback regulatory protein, GFRP GTP cyclohydrolase I feedback regulatory protein, GFRP beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta, antiparallel beta-sheet: order 342165
d.129.7TT1751-like contains a single copy of this fold decorated with additional structures; forms dimer ! TBP-like beta-alpha-beta(4)-alpha
d.58.33Formylmethanofuran:tetrahydromethanopterin formyltransferase duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.63.1CYTH-like phosphatases CYTH-like phosphatases duplication of beta-alpha-beta(3) motif: antiparallel beta sheet forms wide barrel (n=8, S=16) with a channel running through it
d.198.2Arp2/3 complex subunits Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta
d.129.11YugN-like TBP-like beta-alpha-beta(4)-alpha
d.58.21Molybdenum cofactor biosynthesis protein C, MoaC Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.129.1TATA-box binding protein-like TBP-like beta-alpha-beta(4)-alpha
e.66.1Api92-like Api92-like 2 domains; d1: [alpha+beta with similarity to ferredoxin-like fold]; d2: [6 helices, bundle, one buried central helix], inserted into d1
d.280.1Sulfolobus fructose-1,6-bisphosphatase-like Sulfolobus fructose-1,6-bisphosphatase-like 4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340)
d.74.3RBP11-like subunits of RNA polymerase form homo and heterodimers ! DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
d.261.1Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
d.58.43Mechanosensitive channel protein MscS (YggB), C-terminal domain the last strand of the fold is flipped away and involved in oligomerisation ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.272.1Dystroglycan, domain 2 Dystroglycan, domain 2 beta-alpha-beta-X-beta(2)-alpha(2)-beta; antiparallel beta-sheet, order 24153; topological similarity to the ferredoxin-like fold (scop_cf 54861)
d.58.41SEA domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.129.6KA1-like contains a single copy of this fold ! TBP-like beta-alpha-beta(4)-alpha
d.129.9RalF, C-terminal domain contains a single copy of this fold decorated with additional structures ! TBP-like beta-alpha-beta(4)-alpha
d.179.1Substrate-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase unusual fold
d.58.50Hypothetical protein TT1725 Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.282.1SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures
d.58.60Bacterial polysaccharide co-polymerase-like Decorated common fold with extra helical regions, which facilitate oligomerizationFerredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2