1. d.225.1 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains duplication: the N- and C-terminal halves of the whole proteins are structurally similar !
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Intertwined pseudo hexamer of an alpha+beta motif
1oy8 d1oy8a5 A:180-189,199-212,242-249,265-274,766-775
1iwg d1iwga5 A:180-189,199-212,242-249,265-270,766-775
1oyd d1oyda5 A:181-188,199-212,242-249,266-273,766-775
1oy6 d1oy6a5 A:180-188,199-212,242-249,266-274,766-775
1oye d1oyea5 A:180-188,199-212,242-249,266-274,766-775
1oy9 d1oy9a5 A:180-188,199-212,242-249,266-274,766-775
2. c.72.1 Ribokinase-like has extra strand located between strands 2 and 3 !
Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites
1lij d1lija_ A:21-29,30-38,48-62,63-69,124-133
1bx4 d1bx4a_ A:15-22,24-32,45-57,58-64,120-129
1lik d1lika_ A:21-29,30-38,48-62,63-69,124-133
1lii d1liia_ A:21-29,30-38,48-62,63-69,124-133
2i6a d2i6ab1 B:15-23,24-32,42-56,58-64,120-129
2i6a d2i6aa1 A:15-23,24-32,42-56,58-64,120-129
2abs d2absa1 A:21-29,30-38,48-62,63-69,124-133
2i6a d2i6ad1 D:15-23,24-32,42-56,58-64,120-129
2i6a d2i6ac1 C:15-23,24-32,42-56,58-64,120-129
2a9z d2a9za1 A:21-29,30-38,51-62,63-69,124-133
2ab8 d2ab8a1 A:21-29,30-38,48-62,63-69,124-133
1dgm d1dgma_ A:21-29,30-38,48-62,63-69,124-133
2a9y d2a9ya1 A:21-29,30-38,48-62,63-69,124-133
2aa0 d2aa0a1 A:21-29,30-38,48-62,63-69,124-133
1lio d1lioa_ A:22-28,30-38,48-62,63-68,125-133
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 830 (enumeration index: query1119) of S5
2dr6 C:181-189,199-212,242-249,265-273,766-775
2dr6 B:181-189,199-212,242-249,265-273,766-775
2dr6 A:182-189,199-212,242-249,265-272,766-775
3h3y I:414-426,432-454,460-472,474-490,650-659
3h3y J:411-426,432-454,460-473,474-490,650-659
3h3y C:414-426,432-454,460-472,474-490,650-659
3h3y K:414-426,432-454,460-472,474-490,650-659
3h3y E:414-426,432-454,460-472,474-490,650-659
3h3y B:411-426,432-454,460-473,474-490,650-659
3h3y G:414-426,432-454,460-472,474-490,650-659
3h3y D:411-426,432-454,460-473,474-490,650-659
3h3y H:411-426,432-454,460-473,474-490,650-659
3h3y A:414-426,432-454,460-472,474-490,650-659
3h3y F:411-426,432-454,460-473,474-490,650-659
3h3y L:411-426,432-454,460-473,474-490,650-659
2gif B:181-188,199-212,242-249,266-273,766-775
2gif C:180-189,199-212,242-249,265-270,766-775
2gif A:180-188,199-212,242-249,266-274,766-775
2xtb A:14-22,23-31,46-55,57-63,121-129
2v50 E:182-189,199-212,242-249,265-272,765-775
2v50 B:182-189,199-212,242-249,265-272,765-775
2v50 F:180-189,199-212,242-249,266-274,765-775
2v50 C:180-189,199-212,242-249,266-274,765-775
2v50 D:181-189,199-212,242-249,265-273,765-775
2v50 A:181-189,199-212,242-249,265-273,765-775
2hqg A:181-188,199-212,242-249,266-273,766-775
3aoc A:181-188,199-212,242-249,266-273,766-775
3aoc B:181-189,199-212,242-249,265-273,766-775
3aoc C:181-188,199-212,242-249,266-273,766-775
3h3w I:414-426,432-454,460-472,474-490,650-659
3h3w D:411-426,432-454,460-473,474-490,650-659
3h3w B:411-426,432-454,460-473,474-490,650-659
3h3w K:414-426,432-454,460-472,474-490,650-659
3h3w H:411-426,432-454,460-473,474-490,650-659
3h3w F:411-426,432-454,460-473,474-490,650-659
3h3w A:414-426,432-454,460-472,474-490,650-659
3h3w J:411-426,432-454,460-473,474-490,650-659
3h3w G:414-426,432-454,460-472,474-490,650-659
3h3w L:411-426,432-454,460-473,474-490,650-659
3h3w E:414-426,432-454,460-472,474-490,650-659
3h3w C:414-426,432-454,460-472,474-490,650-659
2hqd A:181-189,199-212,242-249,265-273,766-775
3h2t B:411-426,432-454,460-473,474-490,650-659
3h2t A:414-426,432-454,460-472,474-490,650-659
2hrt A:181-188,199-212,242-249,266-273,766-775
2hrt B:182-189,199-212,242-249,265-272,766-775
2hrt F:180-189,199-212,242-249,265-270,766-775
2hrt E:182-188,199-212,242-249,266-272,766-775
2hrt C:180-189,199-212,242-249,265-270,766-775
2hrt D:181-188,199-212,242-249,266-273,766-775
3aoa B:181-189,199-212,242-249,265-273,766-775
3aoa C:181-188,199-212,242-249,266-273,766-775
3aoa A:182-189,199-212,242-249,267-272,766-776
2drd B:181-189,199-212,242-249,265-273,766-775
2drd A:182-188,199-212,242-249,266-272,766-775
2drd C:181-189,199-212,242-249,265-273,766-775
2hqc A:181-189,199-212,242-249,265-273,766-775
3kss A:184-192,202-215,239-246,262-270,763-772
3ubo A:12-20,21-29,39-51,53-59,112-121
2i6b A:15-21,24-32,45-57,58-64,120-129
2i6b B:15-23,24-32,45-57,58-64,120-129
1t9u A:181-189,199-212,242-249,265-273,766-775
3aob C:180-189,199-212,242-249,265-270,766-775
3aob B:181-188,199-212,242-249,266-273,766-775
3aob A:181-189,199-212,242-249,266-273,766-776
2i6w A:181-188,199-212,242-249,266-273,766-775
1t9y A:180-188,199-212,242-249,266-274,766-775
2j8s C:181-189,199-212,242-249,265-273,766-775
2j8s A:181-189,199-212,242-249,265-273,766-775
2j8s B:182-189,199-212,242-249,265-272,766-775
3loo A:15-23,24-32,42-57,58-64,119-128
3loo C:15-23,24-32,42-57,58-64,119-128
3loo B:15-23,24-32,42-57,58-64,119-128
3otx A:14-22,23-31,46-55,57-63,120-129
3otx B:14-22,23-31,46-54,57-63,120-129
2w1b A:181-189,199-212,242-249,265-273,766-776
2dhh B:181-189,199-212,242-249,265-273,766-775
2dhh C:181-189,199-212,242-249,265-273,766-775
2dhh A:182-188,199-212,242-249,266-272,766-775
1t9t A:181-189,199-212,242-249,265-273,766-775
1t9w A:181-188,199-212,242-249,266-273,766-775
3aod A:181-188,199-212,242-249,266-273,766-775
3aod C:180-189,199-212,242-249,265-270,766-775
3aod B:181-189,199-212,242-249,265-273,766-775
3k0i A:184-192,202-215,239-246,262-270,763-772
1t9v A:181-189,199-212,242-249,265-273,766-775
3kso A:184-192,202-215,239-246,262-270,763-772
3nog B:182-189,199-212,242-249,265-272,766-775
3nog C:180-189,199-212,242-249,265-274,766-775
3nog A:180-189,199-212,242-249,265-270,766-775
3noc B:182-189,199-212,242-249,265-272,766-775
3noc C:181-189,199-212,242-249,265-273,766-775
3noc A:181-189,199-212,242-249,265-273,766-775
3k07 A:184-192,202-215,239-246,262-270,763-772
2hqf A:181-189,199-212,242-249,265-273,766-775
1t9x A:181-189,199-212,242-249,265-273,766-775
2rdd A:181-188,199-212,242-249,266-273,766-775
3d9b A:181-189,199-212,242-249,265-273,766-775
3ne5 A:184-192,202-215,239-246,262-270,763-772