1. d.42.1 POZ domain
POZ domain core: beta(2)-alpha(2)-beta(2)-alpha(2); 2 layers a/b; mixed sheet: 2143
3dcg d3dcgd1 D:18-24,26-32,32-40,39-47,58-63
1lqb d1lqbb_ B:18-24,26-32,32-40,39-47,58-62
1buo d1buoa_ A:35-41,42-48,48-57,56-66,68-72
1r2b d1r2bb_ B:33-39,40-46,46-55,54-64,70-74
1r2b d1r2ba_ A:33-39,40-46,46-55,54-64,70-74
1r28 d1r28b_ B:33-39,40-46,46-55,54-63,70-74
3bim d3bime1 E:33-39,40-46,46-55,54-63,70-74
3bim d3bimf1 F:33-39,40-46,46-54,54-64,70-74
1r28 d1r28a_ A:33-39,40-46,46-54,54-64,70-74
3bim d3bimd1 D:33-39,40-46,46-54,54-64,70-74
3bim d3bimc1 C:33-39,40-46,46-55,54-64,70-74
3bim d3bimh1 H:33-39,40-46,46-55,54-64,70-74
3bim d3bimg1 G:33-39,40-46,46-55,54-64,70-74
3bim d3bimb1 B:33-39,40-46,46-55,54-64,70-74
1r29 d1r29a_ A:33-39,40-46,46-54,54-64,70-74
1ldk d1ldkd2 D:2002-2009,2011-2018,2017-2025,2025-2035,2038-2042
3bim d3bima1 A:34-39,40-45,46-55,54-64,70-74
2. c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
1boo d1booa_ A:21-26,27-33,296-308,313-327,329-333
3. d.211.2 Plakin repeat repeats associate forming globular subdomains !
beta-hairpin-alpha-hairpin repeat multiple repeats of beta(2)-alpha(2) motif
1lm5 d1lm5a_ A:2620-2626,2627-2632,2632-2640,2643-2658,2800-2806
1lm5 d1lm5b_ B:2620-2626,2627-2632,2632-2640,2643-2658,2798-2806
1lm7 d1lm7a_ A:2261-2267,2268-2273,2273-2281,2284-2299,2439-2448
1lm7 d1lm7b_ B:2261-2267,2268-2273,2273-2281,2284-2299,2439-2448
4. d.14.1 Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
2go3 d2go3b2 B:152-161,169-180,182-189,233-251,255-262
2ies d2iesb2 B:152-161,169-180,182-189,233-251,255-262
2ies d2iesa2 A:152-161,169-180,182-189,233-251,255-262
2j65 d2j65a2 A:146-155,160-168,170-177,221-239,243-250
1p42 d1p42b2 B:152-161,169-180,182-189,233-251,255-262
2o3z d2o3za2 A:152-161,169-180,182-189,233-251,255-262
1yh8 d1yh8b2 B:152-161,169-180,182-189,233-251,255-262
2go3 d2go3a2 A:152-161,169-180,182-189,233-251,255-262
2go4 d2go4b2 B:152-161,169-180,182-190,233-251,255-262
1yhc d1yhcb2 B:152-161,169-180,182-189,233-251,255-262
1p42 d1p42a2 A:152-161,169-180,182-189,233-251,255-262
2ier d2ierb2 B:152-161,169-180,182-189,233-251,255-262
2ier d2iera2 A:152-161,169-180,182-189,233-251,255-262
2go4 d2go4a2 A:152-161,169-180,182-189,233-251,255-262
1yhc d1yhca2 A:152-161,169-180,182-189,233-251,255-262
2o3z d2o3zb2 B:152-161,169-180,182-189,233-251,255-262
2j65 d2j65b2 B:146-155,160-168,170-177,221-239,243-250
1xxe d1xxea2 A:146-155,160-168,170-178,221-239,243-250
2jt2 d2jt2a2 A:146-155,160-168,167-178,221-239,243-250
5. d.176.1 Oxidoreductase molybdopterin-binding domain
Oxidoreductase molybdopterin-binding domain unusual fold; contains 3 layers of beta-sheet structure and a beta-grasp like motif
1ogp d1ogpc2 C:66-72,76-80,131-140,176-183,221-229
1ogp d1ogpf2 F:66-72,76-80,131-140,176-183,221-229
1ogp d1ogpe2 E:66-72,76-80,131-140,176-183,221-229
1ogp d1ogpd2 D:66-72,76-80,131-140,176-183,221-229
1ogp d1ogpa2 A:66-72,76-80,131-140,176-183,221-229
6. e.23.1 Acetyl-CoA synthetase-like
Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
1ult d1ulta_ A:35-41,44-49,49-68,235-244,244-252
7. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
2ot9 d2ot9a1 A:4-18,19-33,36-51,133-142,146-156
2g3w d2g3wb1 B:4-18,23-33,36-51,135-146,148-158
2g3w d2g3wa1 A:4-18,23-33,36-51,135-146,148-158
8. d.335.1 L,D-transpeptidase pre-catalytic domain-like
L,D-transpeptidase pre-catalytic domain-like unusual fold, made of four helices and four 2-3 stranded beta-sheets
1zat d1zata2 A:229-236,237-242,261-277,305-320,321-326
9. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1f8s d1f8sg1 G:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sa1 A:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sc1 C:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sh1 H:120-124,125-129,129-137,196-208,343-349
1f8s d1f8se1 E:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sf1 F:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sb1 B:120-124,125-129,129-137,196-208,343-349
1f8s d1f8sd1 D:120-124,125-129,129-137,196-208,343-349
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 659 (enumeration index: query1135) of S5
3fkc A:33-39,40-46,46-55,54-64,66-70
3ohu E:38-44,45-51,51-60,59-69,73-78
3ohu D:38-44,45-51,51-60,59-69,73-78
3ohu A:38-44,45-51,51-60,59-69,74-78
3ohu C:38-44,45-51,51-60,59-69,73-78
3m4t A:33-39,40-46,46-55,54-64,66-70
2ihc B:35-41,42-48,48-57,56-66,70-75
2ihc A:35-41,42-48,48-57,56-66,71-75
3m8v A:33-39,40-46,46-55,54-64,66-70
2l1a A:7-15,33-40,44-57,59-66,94-100
2xzm 2:69-77,78-85,114-126,160-170,186-191
3p1w A:105-117,118-127,130-137,186-199,328-335
2lek A:1-6,7-12,16-25,41-49,52-61
2xts A:128-133,138-142,192-201,224-231,266-274
3p3c A:146-155,160-168,170-177,221-239,243-250
2vkp B:9-17,18-26,26-35,34-43,50-55
3ps1 A:152-159,171-177,178-189,233-251,255-262
2blf A:71-76,81-85,135-144,173-180,216-224
3lbz B:33-39,40-46,46-54,54-64,70-74
3lbz A:33-39,40-46,46-54,54-64,70-74
2ves C:151-158,170-176,177-188,232-250,254-261
2ves A:151-158,170-176,180-188,232-250,254-261
2ves B:151-158,170-176,180-188,232-250,254-261
3kve B:120-124,125-129,129-137,196-208,343-349
3kve C:120-124,125-129,129-137,196-208,343-349
2ppi A:31-37,38-44,44-53,52-63,71-76
2c9x A:71-76,81-85,135-144,173-180,216-224
3ohv F:38-44,45-51,51-60,59-69,73-78
3ohv C:38-44,45-51,51-60,59-69,73-78
3p3g A:152-159,171-177,178-189,233-251,255-262
3ga1 B:31-37,38-44,44-53,52-63,65-69
2if5 A:34-40,41-47,47-56,55-64,72-76
2hkl A:229-236,237-242,261-277,305-320,321-326
2hkl B:229-236,237-242,261-277,305-320,321-326
2hkl C:229-236,237-242,261-277,305-320,321-326
3nzk B:152-159,171-177,178-189,233-251,255-262
3nzk A:152-159,171-177,178-189,233-251,255-262
2bpb A:71-76,81-85,135-144,173-180,216-224
2bii A:106-111,116-120,172-181,207-214,252-260
2bii B:106-111,116-120,172-181,207-214,252-260
2xzn 2:69-77,78-85,114-126,160-170,186-191
2jrh A:3-11,12-20,24-37,55-70,74-81
2z8h A:35-41,42-48,48-57,56-66,71-75
2vpk A:25-31,32-38,38-47,46-56,59-63
3e4u F:33-38,41-46,46-55,54-63,70-74
3e4u B:33-38,41-46,46-55,54-64,70-74
3e4u A:33-38,41-46,46-55,54-64,70-74
3e4u D:33-38,41-46,46-55,54-64,70-74
2zt7 A:318-323,333-337,337-345,349-367,372-378
3p3e A:151-158,170-176,180-188,232-250,254-261
3ps2 A:152-159,171-177,178-189,233-251,255-262
2ca3 A:71-76,81-85,135-144,173-180,216-224
2pph A:2-11,12-21,24-37,55-70,74-82
3ps3 A:152-159,171-177,178-189,233-251,255-262
3p76 A:146-155,160-168,170-177,221-239,243-250
2bih A:106-111,116-120,172-181,207-214,252-260
3c19 A:99-110,111-124,134-146,148-163,164-169
2zt8 A:318-323,333-337,337-345,349-367,372-378
2ca4 A:71-77,81-85,135-144,173-180,216-224
2zt6 A:318-323,333-337,337-345,349-367,372-378
3lmm A:239-247,251-257,263-280,297-312,319-327
3lmm B:239-247,251-257,263-280,297-312,319-327
3lmm D:239-247,251-257,263-280,297-312,319-327
3lmm C:239-247,251-257,263-280,297-312,319-327