1. d.58.32 FAD-linked oxidases, C-terminal domain duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1w1j d1w1jb1 B:285-303,308-313,350-360,360-379,455-462 1dzn d1dzna1 A:285-303,308-313,350-360,360-379,455-462 1w1k d1w1kb1 B:285-303,308-313,350-360,360-379,455-462 1dzn d1dznb1 B:285-303,308-313,350-360,360-379,455-462 1vao d1vaob1 B:285-303,308-313,350-359,360-379,455-462 1vao d1vaoa1 A:285-303,308-313,350-359,360-379,455-462 1w1k d1w1ka1 A:285-303,308-313,350-360,360-379,455-462 1e8h d1e8ha1 A:285-303,308-314,350-359,360-379,455-462 1w1m d1w1mb1 B:285-303,308-313,350-360,360-379,455-462 1e8f d1e8fb1 B:285-303,308-313,350-359,360-379,455-462 1qlt d1qlta1 A:285-303,308-313,350-359,360-379,455-462 1w1j d1w1ja1 A:285-303,308-313,350-360,360-379,455-462 1e8f d1e8fa1 A:285-303,308-314,350-359,360-379,455-461 1e0y d1e0yb1 B:285-303,308-313,350-359,360-379,455-462 1qlt d1qltb1 B:285-303,308-313,350-359,360-379,455-462 1e8h d1e8hb1 B:285-303,308-313,350-359,360-379,455-462 1w1m d1w1ma1 A:285-303,309-314,350-360,360-379,455-462 1e0y d1e0ya1 A:285-303,308-313,350-359,360-379,455-462 1qlu d1qlub1 B:285-303,308-313,350-360,360-379,455-461 1qlu d1qlua1 A:285-303,308-313,350-359,360-379,455-461 1w1l d1w1la1 A:285-303,309-313,350-360,360-379,455-462 1ahu d1ahua1 A:285-303,308-313,350-359,360-379,455-461 1ahu d1ahub1 B:285-303,308-313,350-359,360-379,455-461 1ahv d1ahva1 A:285-303,308-313,350-359,360-379,455-461 1ahv d1ahvb1 B:285-303,308-313,350-359,360-379,455-461 2vao d2vaob1 B:285-303,308-313,350-359,360-379,455-461 2vao d2vaoa1 A:285-303,308-313,350-359,360-379,455-461 1ahz d1ahzb1 B:285-303,308-313,350-359,360-379,455-461 1ahz d1ahza1 A:285-303,308-313,350-359,360-379,455-461 1w1l d1w1lb1 B:285-297,308-313,350-360,360-379,455-462 1e8g d1e8ga1 A:285-297,308-313,350-360,360-379,455-462 1wvf d1wvfa1 A:254-272,277-282,320-330,330-349,425-431 1wve d1wvea1 A:254-272,277-282,320-329,330-349,425-431 1wve d1wveb1 B:254-272,277-282,320-329,330-349,425-431 1e8g d1e8gb1 B:285-297,308-313,350-359,360-379,455-461 1diq d1diqb1 B:254-272,277-282,320-329,330-349,425-431 1diq d1diqa1 A:254-272,277-282,320-329,330-349,425-431 1w1s d1w1sa1 A:258-271,284-294,325-336,344-358,425-435 1w1r d1w1ra1 A:258-271,284-294,325-336,344-358,425-435 1w1q d1w1qa1 A:258-271,284-294,325-336,344-358,425-435 1w1o d1w1oa1 A:258-271,284-294,325-336,344-358,425-435 1f0x d1f0xb1 B:1285-1300,1304-1311,1389-1398,1397-1415,1481-1491 1f0x d1f0xa1 A:285-300,304-311,389-398,397-415,481-491 5. d.142.1 Glutathione synthetase ATP-binding domain-like ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies 1vkz d1vkzb3 B:85-95,182-193,194-199,229-251,254-266 1vkz d1vkza3 A:85-95,182-193,194-199,229-251,254-266 1aux d1auxb2 B:224-240,309-320,321-329,350-363,368-378 1m6v d1m6vc6 C:665-675,759-770,771-783,802-821,823-834 1a9x d1a9xc6 C:2665-2675,2759-2770,2771-2783,2802-2821,2823-2834 1ce8 d1ce8e6 E:665-675,759-770,771-783,802-821,823-834 1m6v d1m6vg6 G:665-675,759-770,771-783,802-821,823-834 1a9x d1a9xe6 E:4665-4675,4759-4770,4771-4783,4802-4821,4823-4834 1c30 d1c30c6 C:665-675,759-770,771-783,802-821,823-834 1m6v d1m6ve6 E:665-675,759-770,771-783,802-821,823-834 1auv d1auva2 A:224-240,309-320,321-329,350-363,368-378 1ce8 d1ce8g6 G:665-675,759-770,771-783,802-821,823-834 1a9x d1a9xg6 G:6665-6675,6759-6770,6771-6783,6802-6821,6823-6834 1cs0 d1cs0g6 G:665-675,759-770,771-783,802-821,823-834 1ce8 d1ce8a6 A:665-675,759-770,771-783,802-821,823-834 1ce8 d1ce8c6 C:665-675,759-770,771-783,802-821,823-834 1jdb d1jdbk6 K:664-674,758-769,770-782,801-820,822-833 1c3o d1c3oc6 C:665-675,759-770,771-783,802-821,823-834 1jdb d1jdbe6 E:664-674,758-769,770-782,801-820,822-833 1c30 d1c30a6 A:665-675,759-770,771-783,802-821,823-834 1cs0 d1cs0e6 E:665-675,759-770,771-783,802-821,823-834 1cs0 d1cs0c6 C:665-675,759-770,771-783,802-821,823-834 1c30 d1c30g6 G:665-675,759-770,771-783,802-821,823-834 1c30 d1c30e6 E:665-675,759-770,771-783,802-821,823-834 1c3o d1c3og6 G:665-675,759-770,771-783,802-821,823-834 1c3o d1c3oa6 A:665-675,759-770,771-783,802-821,823-834 1kee d1keec6 C:665-675,759-770,771-783,802-821,823-834 1t36 d1t36c6 C:665-675,759-770,771-783,802-821,823-834 1a9x d1a9xa6 A:665-675,759-770,771-783,802-821,823-834 1t36 d1t36e6 E:665-675,759-770,771-783,802-821,823-834 1m6v d1m6va6 A:665-675,759-770,771-783,802-821,823-834 1kee d1keeg6 G:665-675,759-770,771-783,802-821,823-834 1kee d1keee6 E:665-675,759-770,771-783,802-821,823-834 1jdb d1jdbb6 B:664-674,758-769,770-782,801-820,822-833 1c3o d1c3oe6 E:665-675,759-770,771-783,802-821,823-834 1bxr d1bxra6 A:665-675,759-770,771-783,802-821,823-834 1cs0 d1cs0a6 A:665-675,759-770,771-783,802-821,823-834 1bxr d1bxre6 E:665-675,759-770,771-783,802-821,823-834 1jdb d1jdbh6 H:664-674,758-769,770-782,801-820,822-833 1t36 d1t36a6 A:665-675,759-770,771-783,802-821,823-834 1bxr d1bxrg6 G:665-675,759-770,771-783,802-821,823-834 1t36 d1t36g6 G:665-675,759-770,771-783,802-821,823-834 1kee d1keea6 A:665-675,759-770,771-783,802-821,823-834 1px2 d1px2b2 B:224-240,309-320,321-329,350-363,368-378 1bxr d1bxrc6 C:665-675,759-770,771-783,802-821,823-834 2vr1 d2vr1a3 A:106-116,207-218,220-231,249-268,270-281 1ehi d1ehib2 B:526-536,623-632,634-644,676-695,698-708 1kjq d1kjqb3 B:104-114,201-212,213-227,240-259,261-272 2gpw d2gpwa3 A:106-116,207-218,220-231,249-268,270-281 1ehi d1ehia2 A:126-136,223-232,234-245,276-295,298-308 1ulz d1ulza3 A:105-115,205-216,218-229,247-266,269-279 1kji d1kjib3 B:104-114,201-212,213-227,240-259,261-272 1eyz d1eyzb3 B:104-114,201-212,213-227,240-259,261-272 1ez1 d1ez1b3 B:104-114,201-212,213-227,240-259,261-272 1kjq d1kjqa3 A:104-114,201-212,213-227,240-259,261-272 1kjj d1kjja3 A:104-114,201-212,213-227,240-259,261-272 2gpw d2gpwb3 B:106-116,207-218,221-231,249-268,270-281 1eyz d1eyza3 A:104-114,201-212,213-227,240-259,261-272 1kj9 d1kj9b3 B:104-114,201-212,213-227,240-259,261-272 1ez1 d1ez1a3 A:104-114,201-212,213-227,240-259,261-272 1kj9 d1kj9a3 A:104-114,201-212,213-227,240-259,261-272 1kj8 d1kj8b3 B:104-114,201-212,213-227,240-259,261-272 2hgs d2hgsa4 A:68-83,118-134,136-147,304-313,421-436 1kj8 d1kj8a3 A:104-114,201-212,213-227,240-259,261-272 1kji d1kjia3 A:104-114,201-212,213-227,240-259,261-272 1jdb d1jdbe5 E:118-128,210-223,226-237,256-275,277-290 1kjj d1kjjb3 B:104-114,201-212,213-227,240-259,261-272 1m0t d1m0ta2 A:64-82,121-135,140-149,323-333,440-453 1m6v d1m6vg5 G:119-129,211-224,227-238,257-276,278-291 1c30 d1c30c5 C:119-129,211-224,227-238,257-276,278-291 1cs0 d1cs0c5 C:119-129,211-224,227-238,257-276,278-291 1jdb d1jdbk5 K:118-128,210-223,226-237,256-275,277-290 1jdb d1jdbh5 H:118-128,210-223,226-237,256-275,277-290 1m6v d1m6vc5 C:119-129,211-224,227-238,257-276,278-291 1ce8 d1ce8c5 C:119-129,211-224,227-238,257-276,278-291 1cs0 d1cs0e5 E:119-129,211-224,227-238,257-276,278-291 1e4e d1e4eb2 B:123-133,212-223,224-237,265-284,287-297 1c30 d1c30g5 G:119-129,211-224,227-238,257-276,278-291 1cs0 d1cs0g5 G:119-129,211-224,227-238,257-276,278-291 1c3o d1c3oc5 C:119-129,211-224,227-238,257-276,278-291 1c30 d1c30a5 A:119-129,211-224,227-238,257-276,278-291 1ce8 d1ce8g5 G:119-129,211-224,227-238,257-276,278-291 1a9x d1a9xg5 G:6119-6129,6211-6224,6227-6238,6257-6276,6278-6291 1c3o d1c3oe5 E:119-129,211-224,227-238,257-276,278-291 2dik d2dika3 A:20-33,250-259,266-275,298-317,319-328 1c3o d1c3oa5 A:119-129,211-224,227-238,257-276,278-291 1ce8 d1ce8a5 A:119-129,211-224,227-238,257-276,278-291 1c30 d1c30e5 E:119-129,211-224,227-238,257-276,278-291 1t36 d1t36c5 C:119-129,211-224,227-238,257-276,278-291 1t36 d1t36e5 E:119-129,211-224,227-238,257-276,278-291 1t36 d1t36g5 G:119-129,211-224,227-238,257-276,278-291 2vr1 d2vr1b3 B:106-116,207-218,221-231,249-268,269-281 1cs0 d1cs0a5 A:119-129,211-224,227-238,257-276,278-291 1m6v d1m6ve5 E:119-129,211-224,227-238,257-276,278-291 2j9g d2j9ga3 A:106-116,207-218,221-231,249-268,269-281 1gso d1gsoa3 A:95-105,192-203,204-216,240-263,266-278 1a9x d1a9xe5 E:4119-4129,4211-4224,4227-4238,4257-4276,4278-4291 1a9x d1a9xc5 C:2119-2129,2211-2224,2227-2238,2257-2276,2278-2291 1c3o d1c3og5 G:119-129,211-224,227-238,257-276,278-291 1kee d1keec5 C:119-129,211-224,227-238,257-276,278-291 1kee d1keeg5 G:119-129,211-224,227-238,257-276,278-291 1ce8 d1ce8e5 E:119-129,211-224,227-238,257-276,278-291 1e4e d1e4ea2 A:123-133,212-223,224-237,265-284,287-297 1jdb d1jdbb5 B:118-128,210-223,226-237,256-275,277-290 1a9x d1a9xa5 A:119-129,211-224,227-238,257-276,278-291 2gpw d2gpwc3 C:106-116,207-218,221-231,249-268,269-281 2j9g d2j9gb3 B:106-116,207-218,221-231,249-268,269-281 1t36 d1t36a5 A:119-129,211-224,227-238,257-276,278-291 1m6v d1m6va5 A:119-129,211-224,227-238,257-276,278-291 1kee d1keee5 E:119-129,211-224,227-238,257-276,278-291 1kee d1keea5 A:119-129,211-224,227-238,257-276,278-291 1bxr d1bxrg5 G:119-129,211-224,227-238,257-276,278-291 1bxr d1bxra5 A:119-129,211-224,227-238,257-276,278-291 1dv2 d1dv2b3 B:106-116,207-218,221-231,249-268,269-281 2gps d2gpsb3 B:106-116,207-218,221-231,249-268,269-281 1bnc d1bncb3 B:106-116,207-218,221-231,249-268,269-281 1bxr d1bxrc5 C:119-129,211-224,227-238,257-276,278-291 2gpw d2gpwd3 D:106-116,207-218,221-231,249-268,269-281 1dv1 d1dv1b3 B:106-116,207-218,221-231,249-268,269-281 1bxr d1bxre5 E:119-129,211-224,227-238,257-276,278-291 1dv1 d1dv1a3 A:106-116,207-218,221-231,249-268,269-281 1b6s d1b6sb3 B:70-80,158-170,172-186,199-218,220-231 1dv2 d1dv2a3 A:106-116,207-218,221-231,249-268,269-281 2gps d2gpsa3 A:106-116,207-218,221-231,249-268,269-281 1bnc d1bnca3 A:106-116,207-218,221-231,249-268,269-281 3eth d3ethb3 B:70-80,158-170,172-186,199-218,220-231 3eth d3etha3 A:70-80,158-170,172-186,199-218,220-231 3etj d3etja3 A:70-80,158-170,172-186,199-218,220-231 1b6s d1b6sd3 D:70-80,158-170,172-186,199-218,220-231 1b6s d1b6sa3 A:70-80,158-170,172-186,199-218,220-231 1uc8 d1uc8a2 A:79-89,173-185,186-194,215-230,232-242 1uc8 d1uc8b2 B:79-89,173-185,186-194,215-230,232-242 1iov d1iova2 A:87-97,184-194,195-206,230-249,252-262 1uc9 d1uc9a2 A:79-89,173-185,186-194,215-230,232-242 2pbz d2pbza2 A:89-99,168-180,181-195,220-243,248-257 2pbz d2pbzc2 C:89-99,168-180,181-195,220-243,248-257 2pbz d2pbzb2 B:89-99,168-180,181-195,220-243,248-257 2dln d2dlna2 A:87-97,184-194,195-206,230-249,252-262 1uc9 d1uc9b2 B:79-89,177-185,186-194,215-230,232-241 2r85 d2r85b2 B:91-101,178-190,191-205,238-261,264-275 1iow d1iowa2 A:87-97,184-194,195-206,230-249,252-262 2r85 d2r85a2 A:91-101,178-190,191-205,238-261,264-275 2io9 d2io9a3 A:256-285,313-323,324-333,497-509,578-589 2io7 d2io7b3 B:256-285,313-323,324-333,497-509,578-589 2io9 d2io9b3 B:256-285,313-323,324-333,497-509,578-589 2io8 d2io8b3 B:256-285,313-323,324-333,497-509,578-589 2r86 d2r86b2 B:91-101,178-190,191-205,238-261,264-275 2r86 d2r86a2 A:91-101,178-190,191-205,238-261,264-275 2ioa d2ioaa3 A:256-285,313-323,324-333,497-509,578-589 2r84 d2r84a2 A:91-101,178-190,191-205,238-261,264-275 2io8 d2io8a3 A:256-285,313-323,324-333,497-509,578-589 2ioa d2ioab3 B:256-285,313-323,324-333,497-509,578-589 2io7 d2io7a3 A:256-285,313-323,324-333,497-509,578-589 1m0w d1m0wb2 B:1064-1082,1121-1137,1138-1149,1323-1333,1438-1453 2iob d2iobb3 B:256-285,313-323,324-333,497-509,578-589 2iob d2ioba3 A:256-285,313-323,324-333,497-509,578-589 1m0t d1m0tb2 B:1054-1082,1121-1135,1140-1150,1323-1333,1438-1453 1m0t d1m0tb2 B:1054-1082,1121-1135,1140-1150,1315-1323,1438-1453 2io7 d2io7a3 A:256-285,313-323,324-333,489-498,578-589 2ioa d2ioab3 B:256-285,313-323,324-333,489-498,578-589 2ioa d2ioaa3 A:256-285,313-323,324-333,489-498,578-589 2io9 d2io9a3 A:256-285,313-323,324-333,489-498,578-589 2io8 d2io8b3 B:256-285,313-323,324-333,489-498,578-589 2io8 d2io8a3 A:256-285,313-323,324-333,489-498,578-589 2io7 d2io7b3 B:256-285,313-323,324-333,489-498,578-589 2io9 d2io9b3 B:256-285,313-323,324-333,489-498,578-589 2iob d2iobb3 B:256-285,313-323,324-333,489-498,578-589 6. e.41.1 Adenylylcyclase toxin (the edema factor) Domain 1 has topological and active site similarity to the Nucleotidyltransferases (eg. 1kny N-domain); domain 3 binds calmodulin ! Adenylylcyclase toxin (the edema factor) 3 domains: (1&2) alpha+beta, with domain 2 being inserted in domain 1; (3) all-alpha 1k8t d1k8ta_ A:308-323,323-329,493-500,550-568,592-598 1pk0 d1pk0b_ B:308-323,323-329,493-500,550-568,591-598 1pk0 d1pk0a_ A:308-323,323-329,493-500,550-568,591-598 1pk0 d1pk0c_ C:308-323,323-329,493-500,550-568,591-598 1k90 d1k90b_ B:308-323,323-329,493-500,550-568,591-598 1lvc d1lvcc_ C:308-323,323-329,493-500,550-568,591-598 1k90 d1k90c_ C:308-323,323-329,493-500,550-568,591-598 1lvc d1lvca_ A:308-323,323-329,493-500,550-568,591-598 1k90 d1k90a_ A:308-323,323-329,493-500,550-568,591-598 1sk6 d1sk6b_ B:308-323,323-329,493-500,550-568,591-598 1k93 d1k93a_ A:308-323,323-329,493-500,550-568,591-598 1k93 d1k93c_ C:308-323,323-329,493-500,550-568,591-598 1sk6 d1sk6c_ C:308-323,323-329,493-500,550-568,591-598 1sk6 d1sk6a_ A:308-323,323-329,493-500,550-568,591-598 1s26 d1s26a_ A:308-323,323-329,493-500,550-568,591-598 1s26 d1s26c_ C:308-323,323-329,493-500,550-568,591-598 1s26 d1s26b_ B:308-323,323-329,493-500,550-568,591-598 1lvc d1lvcb_ B:308-323,323-329,493-500,550-568,591-598 1k93 d1k93b_ B:308-323,323-329,493-500,550-568,591-598 12. d.261.1 Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold 1uc2 d1uc2b_ B:115-128,203-207,227-237,275-312,476-481 1uc2 d1uc2a_ A:115-128,203-214,227-237,275-312,476-481 14. d.359.1 BH3703-like BH3703-like alpha-beta(3)-alpha-beta(2)-alpha(2); antiparallel beta-sheet, order:32145; duplication: two alpha-beta(2) structural repeats are arranged with pseudo twofold symmetry 2ia1 d2ia1a1 A:0-21,23-35,37-49,66-93,97-105 2ia1 d2ia1b1 B:0-21,23-35,37-49,66-93,97-105