1. b.121.4 Positive stranded ssRNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1ny7 d1ny711 1:11-20,26-35,36-42,46-52,144-152
1pgw d1pgw11 1:8-17,26-35,36-42,46-52,144-153
1pgl d1pgl11 1:8-17,26-35,36-42,46-52,144-153
1bmv d1bmv11 1:1008-1017,1026-1035,1036-1042,1046-1052,1145-1153
2. d.181.1 Insert subdomain of RNA polymerase alpha subunit
Insert subdomain of RNA polymerase alpha subunit unusual fold; contains a left-handed beta-alpha-beta unit
2nvy d2nvyc2 C:71-75,96-106,118-122,128-133,149-163
2nvt d2nvtc2 C:71-76,96-105,118-122,127-133,151-163
1k83 d1k83c2 C:71-75,96-106,118-122,128-133,149-163
1i50 d1i50c2 C:71-75,96-106,118-122,128-133,149-163
1twh d1twhc2 C:71-75,96-105,118-122,128-133,151-163
2e2j d2e2jc2 C:71-75,96-105,118-122,128-133,151-163
2ja7 d2ja7o2 O:71-75,96-105,118-122,128-133,151-163
2ja5 d2ja5c2 C:71-75,96-105,118-122,128-133,151-163
2nvq d2nvqc2 C:71-76,96-106,118-122,127-133,149-163
2ja8 d2ja8c2 C:71-75,96-105,118-122,128-133,151-163
2ja7 d2ja7c2 C:71-75,96-105,118-122,128-133,151-163
2b63 d2b63c2 C:71-75,96-105,118-122,128-133,151-163
1twf d1twfc2 C:71-76,96-106,118-122,127-133,149-163
2b8k d2b8kc2 C:71-75,96-105,118-122,128-133,151-163
3. i.8.1 RNA polymerase
RNA polymerase
1sfo d1sfoc_ C:71-75,96-106,118-122,128-133,149-163
1y1v d1y1vc_ C:71-75,96-105,118-122,128-133,151-163
1y1w d1y1wc_ C:71-75,96-105,118-122,128-133,151-163
1y77 d1y77c_ C:71-75,96-105,118-122,128-133,151-163
1wcm d1wcmc_ C:71-75,96-105,118-122,128-133,151-163
1r9t d1r9tc_ C:71-76,96-106,118-122,127-133,149-163
4. d.131.1 DNA clamp
DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1t6l d1t6la2 A:143-149,179-187,188-196,208-213,215-222
1iz4 d1iz4a2 A:131-138,154-161,162-168,185-192,194-200
1yyp d1yypa2 A:142-149,179-186,189-196,208-213,215-222
3d1f d3d1fb3 B:253-259,280-287,288-297,308-312,314-320
1vyj d1vyjg2 G:134-140,157-163,165-174,195-200,202-208
1ud9 d1ud9d2 D:129-135,151-159,160-167,182-189,191-198
1ud9 d1ud9c2 C:129-135,151-159,160-167,182-189,191-198
1isq d1isqa2 A:131-137,154-161,162-171,185-192,194-200
1ud9 d1ud9a2 A:129-135,151-159,160-167,182-189,191-198
1vyj d1vyji2 I:134-140,156-164,165-174,195-200,202-209
1vyj d1vyje2 E:134-140,156-163,165-174,194-200,202-209
5. d.212.1 TolA/TonB C-terminal domain
TolA/TonB C-terminal domain beta(2)-alpha-beta; 2 layers, alpha/beta; left-handed beta-alpha-beta unit in non-swapped monomer
1u07 d1u07b_ B:154-158,173-183,187-198,213-217,217-222
1u07 d1u07a_ A:154-158,173-183,187-198,213-217,221-239
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 145 (enumeration index: query1146) of S5
3hxl A:102-108,116-124,130-138,158-164,169-175
3hoy C:71-76,96-105,118-122,127-133,151-163
2ijx A:129-135,152-159,160-167,182-189,191-197
2ijx B:129-135,152-159,160-167,182-189,191-197
2ijx C:129-135,152-159,160-167,182-189,191-197
2ijx D:129-135,152-159,160-167,182-189,191-197
3s2h C:71-76,96-105,118-122,127-133,151-163
3j0k C:71-75,96-105,118-122,128-133,151-163
3po3 C:71-76,96-105,118-122,127-133,151-163
3s17 C:71-75,96-105,118-122,128-133,151-163
3i2m X:164-169,190-198,199-207,234-239,241-248
3s14 C:71-75,96-105,118-122,128-133,151-163
3foa A:221-225,234-241,277-286,322-326,335-345
3foa B:221-225,234-241,277-286,322-326,335-345
3foa D:221-225,234-241,277-286,322-326,335-346
3foa C:221-225,234-241,277-286,322-326,335-345
3fo8 D:221-225,234-240,277-286,322-326,335-347
3rzd C:71-75,96-105,118-122,128-133,151-163
3m0c B:481-490,494-504,505-514,518-528,557-566
3po2 C:71-75,96-105,118-122,128-133,151-163
3hox C:71-75,96-105,118-122,128-133,151-163
2p4e A:481-490,494-504,505-514,518-528,556-566
3s1n C:71-75,96-106,118-122,128-133,150-163
3gtp C:71-75,96-106,118-122,128-133,149-163
3m3y C:71-75,96-105,118-122,128-133,151-163
3hoz C:71-76,96-105,118-122,127-133,151-163
3lx2 C:131-137,154-161,162-170,185-192,194-201
3rzo C:71-76,96-105,118-122,127-133,151-163
3hov C:71-76,96-105,118-122,127-133,151-163
3p16 D:270-276,296-303,304-312,324-328,330-336
2zvl E:134-140,156-164,165-174,195-200,202-209
2zvl F:134-140,156-164,165-174,195-200,202-209
2zvl C:134-140,156-164,165-174,195-200,202-209
3hou O:71-76,96-105,118-122,127-133,151-163
3hou C:71-76,96-105,118-122,127-133,151-163
3how C:71-75,96-105,118-122,128-133,151-163
3s15 C:71-75,96-105,118-122,128-133,151-163
3foi A:221-225,234-241,277-286,322-326,335-345
3foi D:221-225,234-241,277-286,322-326,335-345
3foi C:221-225,234-241,277-286,322-326,335-345
3foi B:221-225,234-241,277-286,322-326,335-345
3foi E:221-225,234-241,277-286,322-326,335-345
3foi F:221-225,234-241,277-286,322-326,335-345
4a3c C:71-76,96-105,118-122,127-133,151-163
3lml C:106-111,119-127,133-141,161-166,174-180
3lml B:106-111,119-127,133-141,161-166,174-180
3lml F:106-111,119-127,133-141,161-166,174-180
3lml D:106-111,119-127,133-141,161-166,174-180
2z0l A:160-168,186-193,196-203,230-236,237-244
2z0l B:160-168,186-194,195-203,230-236,237-244
3s1m C:71-76,96-105,118-122,127-133,151-163
3a2f B:131-137,154-161,162-171,185-192,194-200
3s1r C:71-75,96-105,118-122,127-133,151-163
2zvk C:134-140,157-164,165-174,195-200,202-208
2zvk A:134-140,156-164,165-174,195-200,202-209
3gpm A:134-140,156-164,165-174,195-200,202-209
3p91 A:135-141,159-166,167-176,195-200,202-208
2pmw B:481-490,494-504,505-514,518-528,557-566
2qtw B:481-490,494-504,505-514,518-528,557-566
2zvm C:134-140,156-164,165-174,195-200,202-209
3k1f C:71-75,96-106,118-122,128-133,150-163
3foh A:221-225,234-241,277-286,322-326,335-345
3foh D:221-225,234-241,277-286,322-326,335-345
3foh C:221-225,234-241,277-286,322-326,335-345
3foh B:221-225,234-241,277-286,322-326,335-345
3foh E:221-225,234-241,277-286,322-326,335-345
3foh F:221-225,234-241,277-286,322-326,335-345
3hsl X:164-169,190-198,199-207,234-239,241-248
3s16 C:71-75,96-105,118-122,128-133,151-163
3aiz D:129-135,153-160,161-167,185-190,192-198
3gtq C:71-75,96-105,118-122,128-133,151-163
2r93 C:71-75,96-105,118-122,128-133,151-163
2r92 C:71-75,96-105,118-122,128-133,151-163