1. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
2a1k d2a1ka1 A:58-69,70-77,87-97,102-110,227-240
2atq d2atqb1 B:58-69,70-77,87-97,102-110,227-240
2a1k d2a1kb1 B:58-69,70-77,87-97,102-110,227-240
1gpc d1gpca_ A:58-69,70-77,87-97,102-110,227-239
2. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
3cce d3ccew1 W:1-7,51-56,58-70,92-103,142-154
2qex d2qexw1 W:1-7,51-56,58-70,92-103,142-154
3. d.59.1 Ribosomal protein L30p/L7e
Ribosomal protein L30p/L7e core: beta-alpha-beta-alpha-beta; antiparallel beta-sheet: order 312; some similarity to the ferredoxin-like fold
1yj9 d1yj9w1 W:1-7,51-56,58-70,92-103,142-154
4. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1vk0 d1vk0c_ C:6-12,14-24,154-164,166-177,181-206
1vk0 d1vk0d_ D:6-12,14-24,154-164,166-177,181-206
2q3s d2q3sf1 F:5-12,14-24,154-164,166-177,181-206
1vk0 d1vk0e_ E:6-12,14-24,154-164,167-177,181-206
1vk0 d1vk0a_ A:6-12,14-25,154-164,166-177,181-206
1vk0 d1vk0b_ B:6-12,14-25,154-164,166-177,181-206
1vk0 d1vk0f_ F:6-12,14-25,154-164,166-177,181-206
2q3s d2q3sb1 B:5-12,14-25,154-164,166-177,181-206
2q3s d2q3sd1 D:6-12,14-25,154-164,166-177,181-206
2q3s d2q3sc1 C:6-12,14-25,154-164,167-177,181-206
2q3s d2q3sa1 A:6-12,14-25,154-164,167-177,181-206
5. d.248.1 Coproporphyrinogen III oxidase
Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567
3dwr d3dwrb1 B:104-116,122-134,227-249,261-270,285-298
3dws d3dwsa1 A:104-117,121-134,227-249,261-270,285-298
1vju d1vjua_ A:112-125,129-142,235-257,269-278,293-306
2qt8 d2qt8a1 A:104-117,121-134,227-249,261-270,285-298
1vju d1vjub_ B:112-125,129-142,235-257,269-278,293-306
2qt8 d2qt8b1 B:104-117,121-134,227-249,261-270,285-298
3dwr d3dwra1 A:104-117,121-134,227-249,261-270,285-298
3dws d3dwsb1 B:104-117,121-134,227-249,261-270,285-298
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 672 (enumeration index: query1158) of S5
3izr E:84-92,135-140,142-154,182-193,232-244
3o58 G:81-90,134-138,140-153,180-191,232-244
4a1e V:79-86,130-135,137-149,177-188,227-239
3mdn A:101-105,106-116,121-130,130-138,141-154
3mdn B:101-105,106-116,121-130,130-138,141-154
3mdn D:101-105,106-116,121-130,130-138,141-154
3mdn C:101-105,106-116,121-130,130-138,141-154
3ejo B:104-117,121-134,227-249,261-270,285-298
3ejo A:104-117,122-134,227-249,261-270,285-298
4a17 V:79-86,130-135,137-149,177-188,227-239
4a1c V:79-86,130-135,137-149,177-188,227-239
3jyw F:84-89,133-138,140-152,180-191,236-244
2wad A:407-411,431-435,435-443,444-457,577-594
4a1a V:79-86,130-135,137-149,177-188,227-239
3g5b A:660-667,668-675,879-888,892-900,901-918
3o5h G:81-90,133-138,140-153,180-191,232-244