1. c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
1boo d1booa_ A:110-124,125-135,156-165,221-225,251-263
2f8l d2f8la1 A:251-265,264-274,284-293,303-309,313-329
2ar0 d2ar0a1 A:319-334,333-342,353-362,376-382,396-408
2ar0 d2ar0b1 B:319-334,333-342,353-362,376-382,396-408
2. c.76.1 Alkaline phosphatase-like
Alkaline phosphatase-like core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 43516728, strand 7 is antiparallel to the rest
1p49 d1p49a_ A:52-61,62-67,379-384,391-396,425-432
1fsu d1fsua_ A:69-78,79-84,329-334,341-346,375-383
1hdh d1hdha_ A:29-38,39-44,383-391,398-402,439-446
1hdh d1hdhb_ B:29-38,39-44,383-391,398-402,439-446
1n2k d1n2ka_ A:46-55,56-61,314-318,324-328,357-364
1n2l d1n2la_ A:46-55,56-61,314-318,324-328,357-364
1auk d1auka_ A:46-55,56-61,314-318,324-328,357-364
1e2s d1e2sp_ P:46-55,56-61,314-318,324-328,357-364
1e1z d1e1zp_ P:46-55,56-61,314-318,324-328,357-364
1e3c d1e3cp_ P:46-55,56-61,314-318,324-328,357-364
1e33 d1e33p_ P:46-55,56-61,314-318,324-328,357-364
3. d.120.1 Cytochrome b5-like heme/steroid binding domain
Cytochrome b5-like heme/steroid binding domain beta-alpha-beta(2)-alpha(1,2)-(beta)-alpha(2)-beta; 3 layers: a/b/a; antiparallel beta-sheet, order: 1532(4)
1fcb d1fcba2 A:12-20,24-30,31-37,54-58,69-76
1ltd d1ltda2 A:12-20,24-30,31-37,54-58,67-75
1cyo d1cyoa_ A:8-16,20-26,27-33,50-54,64-75
1lqx d1lqxa_ A:8-17,20-26,27-33,50-54,64-75
1es1 d1es1a_ A:8-17,20-26,27-33,50-54,64-75
1m2i d1m2ia_ A:8-17,20-26,27-33,50-54,64-75
1m20 d1m20a_ A:8-17,20-26,27-33,50-54,64-75
1m59 d1m59a_ A:8-17,20-26,27-33,50-54,64-75
1m2m d1m2ma_ A:8-17,20-26,27-33,50-54,64-75
4. d.58.10 Acylphosphatase/BLUF domain-like
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1x0p d1x0pd1 D:3017-3036,3037-3045,3046-3055,3092-3098,3125-3140
2byc d2bycb1 B:517-537,538-545,547-556,593-598,616-631
1x0p d1x0pj1 J:9017-9036,9037-9045,9046-9055,9092-9098,9125-9140
1x0p d1x0pc1 C:2017-2036,2037-2045,2046-2055,2092-2098,2125-2140
1x0p d1x0pi1 I:8017-8036,8037-8045,8046-8055,8092-8098,8125-8141
1x0p d1x0pb1 B:1017-1036,1037-1045,1046-1055,1092-1098,1125-1140
1x0p d1x0pe1 E:4017-4036,4037-4045,4046-4055,4092-4098,4125-4141
1x0p d1x0pa1 A:117-136,137-145,146-155,192-198,225-240
1x0p d1x0pg1 G:6017-6036,6037-6045,6046-6055,6092-6098,6125-6140
1x0p d1x0ph1 H:7017-7036,7037-7045,7046-7055,7092-7098,7125-7139
1x0p d1x0pf1 F:5017-5036,5037-5045,5046-5055,5092-5098,5125-5142
2byc d2byca1 A:17-37,38-45,47-56,93-98,116-135
1x0p d1x0pi1 I:8017-8036,8037-8045,8046-8055,8092-8098,8102-8114
1x0p d1x0pg1 G:6017-6036,6037-6045,6046-6055,6092-6098,6102-6114
1x0p d1x0pe1 E:4017-4036,4037-4045,4046-4055,4092-4098,4102-4114
1x0p d1x0pf1 F:5017-5036,5037-5045,5046-5055,5092-5098,5102-5114
1x0p d1x0pb1 B:1017-1036,1037-1045,1046-1055,1092-1098,1102-1114
1x0p d1x0pc1 C:2017-2036,2037-2045,2046-2055,2092-2098,2102-2114
1x0p d1x0pa1 A:117-136,137-145,146-155,192-198,202-214
1x0p d1x0pd1 D:3017-3036,3037-3045,3046-3055,3092-3098,3102-3114
1x0p d1x0ph1 H:7017-7036,7037-7045,7046-7055,7092-7098,7102-7115
5. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
2hbl d2hbla2 A:218-232,233-243,249-259,286-290,355-369
2hbm d2hbma2 A:218-232,233-243,249-259,286-290,355-369
2q3s d2q3se1 E:29-46,47-57,71-81,109-114,181-206
1yt3 d1yt3a3 A:8-23,23-33,39-49,75-79,145-174
2q3s d2q3sa1 A:29-46,47-58,70-80,109-113,181-206
1vk0 d1vk0a_ A:29-46,47-58,70-80,109-114,181-206
2q3s d2q3sf1 F:29-46,47-58,70-81,109-114,181-206
1vk0 d1vk0e_ E:29-46,47-58,70-80,109-114,181-206
1vk0 d1vk0f_ F:29-46,47-58,70-80,109-113,181-206
1vk0 d1vk0d_ D:29-46,47-58,70-81,109-114,181-206
1vk0 d1vk0c_ C:29-46,47-58,70-81,109-114,181-206
1vk0 d1vk0b_ B:29-46,47-58,70-81,109-114,181-206
2d5r d2d5ra1 A:19-34,35-43,74-84,151-155,226-247
2q3s d2q3sc1 C:29-46,47-58,70-80,109-113,181-206
2q3s d2q3sb1 B:30-46,47-58,70-81,109-114,181-206
2hbj d2hbja2 A:218-232,233-243,249-259,286-290,355-384
2hbk d2hbka2 A:218-232,233-243,249-259,286-290,355-384
1uoc d1uocb_ B:20-35,39-49,76-88,156-160,246-266
1uoc d1uoca_ A:20-35,39-49,76-88,156-160,246-266
2hbl d2hbla2 A:218-232,233-243,249-259,286-290,368-384
2hbm d2hbma2 A:218-232,233-243,249-259,286-290,368-384
6. d.14.1 Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
1wuu d1wuuc1 C:8-25,72-78,86-91,124-132,140-158
1wuu d1wuub1 B:8-25,72-78,86-91,124-132,140-158
1usv d1usve_ E:285-298,340-346,347-353,365-372,386-411
1wuu d1wuud1 D:8-25,71-78,86-92,124-132,140-158
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 986 (enumeration index: query1187.1203.2432) of S5
2fbv A:58-74,75-85,95-105,132-137,206-229
2a2d A:16-31,78-84,90-94,129-137,145-163
2cge A:285-298,340-346,347-353,365-372,382-411
2cge D:285-298,340-346,347-353,365-372,382-411
2cge B:285-298,341-346,347-352,365-372,382-411
3g0z A:26-41,45-53,84-94,161-165,236-257
3hpy C:161-174,175-183,188-196,281-286,285-295
3saf B:293-307,308-318,324-334,361-365,443-460
3saf A:293-307,308-318,324-334,361-365,430-460
3saf B:293-307,308-318,324-334,361-365,430-444
2e6l A:52-68,71-79,92-98,127-131,200-224
3lkd B:366-380,381-391,397-406,413-419,433-447
3lkd A:366-380,381-391,397-406,413-419,433-447
1u9u A:8-17,20-26,27-33,50-54,64-75
2ibj A:8-16,20-26,27-33,50-54,64-75
3gfx B:19-35,36-44,45-54,92-97,101-113
3gfx A:19-35,36-44,45-54,91-97,101-113
2ozv B:179-191,193-205,208-220,220-229,242-251
2y7h B:317-332,331-340,351-360,374-380,394-406
2y7h C:317-332,331-340,351-360,374-380,394-406
2vqr A:34-43,44-49,345-354,361-366,393-401
3khk B:405-417,418-426,436-444,458-465,479-497
3khk A:405-417,418-426,436-445,458-465,479-497
2y7c B:317-332,331-340,351-360,374-380,394-406
2y7c C:317-332,331-340,351-360,374-380,394-406
3e0d A:470-485,488-498,577-582,598-605,605-613
3e0d B:470-485,488-495,577-582,598-605,605-613
2dkd B:36-55,58-65,73-80,132-140,171-185
2dkd A:36-55,58-65,73-80,132-140,171-185
3gfz B:19-35,36-44,45-54,92-97,101-113
3gfz A:19-35,36-44,45-54,91-97,101-113
2e6m A:52-68,71-79,92-98,127-131,200-224
3gg1 B:19-35,36-44,45-54,92-97,101-113
3gg1 A:19-35,36-44,45-54,91-97,101-113
3lm4 A:162-175,176-185,186-195,284-289,291-298
3lm4 D:162-175,176-185,186-195,284-289,291-298
3lm4 B:162-175,176-185,186-195,284-288,288-298
3lm4 C:162-175,176-185,186-195,284-289,291-298
2fbx A:58-74,75-85,95-104,132-137,206-231
3sag A:293-307,308-318,324-334,361-365,443-460
3sag A:293-307,308-318,324-334,361-365,430-444
3sag B:293-307,308-318,324-334,361-365,443-460
3sag B:293-307,308-318,324-334,361-365,430-444
2kb2 A:22-38,39-47,48-57,94-100,104-117
3g10 A:26-41,45-53,84-94,161-165,236-257
2o1u B:351-364,408-414,415-420,433-440,454-476
2o1u A:351-364,408-414,415-420,433-440,454-475
2gso B:66-75,76-80,373-380,386-394,415-423
2gso A:66-75,76-81,373-380,386-394,415-423
2gso A:57-64,76-81,373-380,386-394,393-406
2gso A:57-64,76-81,373-380,386-394,415-423
2gso B:57-64,76-80,373-380,386-394,415-423
2fc0 A:58-74,75-85,98-105,132-137,206-231
3pry A:297-310,352-358,359-364,377-384,393-423
2hfo J:20-39,40-47,49-58,96-101,128-144
2hfo J:20-39,40-47,49-58,96-101,106-117
2hfo A:20-39,40-47,49-58,95-101,106-117
2hfo C:20-39,40-47,49-58,93-99,106-117
2hfo I:20-39,40-47,49-58,95-101,128-144
2hfo E:20-39,40-47,49-58,95-101,106-117
2hfo I:20-39,40-47,49-58,95-101,106-117
2hfo A:20-39,40-47,49-58,95-101,128-144
2hfo F:20-39,40-47,49-58,95-101,128-143
2hfo B:20-39,40-47,49-58,95-100,128-143
2hfo G:20-39,40-47,49-58,95-101,128-142
2hfo H:20-39,40-47,49-58,95-101,106-117
2hfo G:20-39,40-47,49-58,95-101,106-117
1u9m D:8-16,20-26,27-33,50-54,64-75
2gsn B:66-75,76-81,373-380,386-394,415-423
2gsn A:66-75,76-81,373-380,386-394,415-423
2gsn A:57-64,76-81,373-380,386-394,393-406
2gsn A:57-64,76-81,373-380,386-394,415-423
2gsn B:57-64,76-81,373-380,386-394,393-406
2gsn B:57-64,76-81,373-380,386-394,415-423
3sah B:293-307,308-318,324-334,361-365,443-460
3sah A:293-307,308-318,324-334,361-365,430-460
3sah B:293-307,308-318,324-334,361-365,430-444
2fbt A:58-74,75-85,95-105,132-137,206-231
2a2c A:16-31,78-84,90-94,129-137,145-163
2p51 A:26-41,45-53,84-94,161-165,236-257
2w8d A:270-279,281-287,504-510,513-518,522-535
2w8d B:270-279,281-287,504-510,513-518,522-535
2hfn F:20-39,40-47,49-58,95-101,128-143
2hfn E:20-39,40-47,49-58,95-101,128-143
2hfn A:20-39,40-47,49-58,95-101,106-117
2hfn C:20-39,40-47,49-58,95-101,106-117
2hfn A:20-39,40-47,49-58,95-101,128-144
2hfn I:20-39,40-47,49-58,95-101,106-117
2hfn J:20-39,40-47,49-58,95-101,106-117
2hfn H:20-39,40-47,49-58,95-101,106-117
2hfn B:20-39,40-47,49-58,95-101,106-117
2hfn E:20-39,40-47,49-58,95-101,106-117
2hfn G:20-39,40-47,49-58,95-101,106-117
3q6n F:305-318,360-366,367-373,385-392,408-431
3q6n A:305-318,360-366,367-373,385-392,407-431
2o1w A:351-364,408-414,415-420,433-440,454-475
2o1w C:351-364,408-414,415-420,433-440,454-475
2o1w D:351-364,408-414,415-420,433-440,454-475
2o1w B:351-364,408-414,415-420,433-440,454-475
2o1w E:351-364,408-414,415-420,433-440,454-475
3gfy A:19-35,36-44,45-54,91-97,101-113
3gfy B:19-35,36-44,45-54,92-97,101-113
2hnh A:408-423,426-431,512-518,536-540,542-550
2dkc B:36-55,58-65,73-80,132-140,171-185
2dkc A:36-55,58-65,73-80,132-140,171-185
2fby A:58-74,75-85,95-105,132-138,206-231
2rh6 B:57-64,76-81,373-380,386-394,415-423
2rh6 A:66-75,76-81,373-380,386-394,415-423
2rh6 A:57-64,76-81,373-380,386-394,393-406
2rh6 B:66-75,76-81,373-380,386-394,415-423
2rh6 A:57-64,76-81,373-380,386-394,415-423
2rh6 B:57-64,76-81,373-380,386-394,393-406
3gg0 B:19-35,36-44,45-54,91-97,101-113
3gg0 A:19-35,36-44,45-54,91-97,101-113
2w8s C:34-43,44-49,345-354,361-366,393-401
2w8s C:34-43,44-49,345-354,361-366,369-382
3mzi B:17-36,37-44,46-56,92-98,125-140
3mzi B:17-36,37-44,46-56,92-98,103-114
3mzi E:17-36,37-44,46-55,93-98,125-141
3mzi E:17-36,37-44,46-55,93-98,103-115
2dka B:36-55,58-64,71-80,132-140,171-185
2dka A:36-55,58-65,73-80,132-140,171-185
2hpi A:470-485,488-498,577-582,598-603,605-613
3lxq B:309-318,319-324,523-528,533-538,541-554
3lxq A:309-318,319-324,523-528,533-538,541-554
1y6z B:13-26,70-76,77-85,95-102,116-142
2cg9 A:285-298,340-346,347-353,365-372,385-411
2hqa A:407-423,426-431,512-518,536-540,542-550
2hpm A:469-485,488-493,576-582,598-603,605-613
2gsu B:66-75,76-80,373-380,386-394,415-423
2gsu A:66-75,76-81,373-380,386-394,415-423
2gsu A:57-64,76-81,373-380,386-394,415-423
2gsu A:57-64,76-81,373-380,386-394,393-406
2gsu B:57-64,76-80,373-380,386-394,415-423
3ozz B:8-16,20-26,27-33,50-54,64-75
3hq0 C:161-174,175-183,188-196,281-286,288-295