1. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
3pva d3pvab_ B:75-83,101-113,125-129,141-149,151-160
3pva d3pvad_ D:75-83,101-113,125-129,141-149,151-160
3pva d3pvaf_ F:75-83,101-113,125-129,141-149,151-160
3pva d3pvaa_ A:75-83,101-113,125-129,141-149,151-160
3pva d3pvag_ G:75-83,101-113,125-129,141-149,151-160
3pva d3pvae_ E:75-83,101-113,125-129,141-149,151-160
3pva d3pvac_ C:75-83,101-113,125-129,141-149,151-160
3pva d3pvah_ H:75-83,101-113,125-129,141-149,151-160
2pva d2pvaa_ A:75-83,101-113,125-129,141-149,151-160
2pva d2pvad_ D:75-83,101-113,125-130,141-149,151-160
2pva d2pvac_ C:75-83,101-113,125-130,141-149,151-160
2pva d2pvab_ B:75-83,101-113,126-130,141-149,152-160
2. b.113.1 N-terminal domain of MutM-like DNA repair proteins
N-terminal domain of MutM-like DNA repair proteins pseudobarrel; capped on both ends by alpha-helices
2oq4 d2oq4a2 A:23-28,29-40,61-67,88-95,97-104
1q3b d1q3ba2 A:22-28,29-40,61-67,88-95,97-104
1q39 d1q39a2 A:23-28,29-40,61-67,88-95,97-104
1q3c d1q3ca2 A:23-28,29-40,61-67,88-95,97-104
2opf d2opfa2 A:23-28,29-40,61-67,88-95,97-104
1k3w d1k3wa2 A:21-28,29-40,61-67,88-95,97-104
1k3x d1k3xa2 A:21-28,29-40,61-67,88-95,97-104
2ea0 d2ea0a2 A:21-28,29-40,61-67,88-95,97-104
3. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
1jxd d1jxda_ A:40-44,49-58,67-75,76-83,91-98
1fa4 d1fa4a_ A:40-44,52-61,69-78,82-89,97-104
1nin d1nina_ A:40-44,52-61,70-78,82-90,97-105
1j5d d1j5da_ A:38-44,49-58,67-75,76-83,91-98
1jxf d1jxfa_ A:38-44,49-58,67-74,76-84,91-98
2cj3 d2cj3a1 A:40-44,52-60,70-77,83-90,97-104
2gim d2gimc1 C:40-44,52-60,69-77,83-89,97-104
2gim d2gima1 A:40-44,52-60,69-77,83-90,97-104
1kdi d1kdia_ A:38-42,48-60,71-76,80-88,95-102
1kdj d1kdja_ A:38-42,48-60,71-76,80-88,95-102
4. b.45.1 FMN-binding split barrel related to the ferredoxin reductase-like FAD-binding domain !
Split barrel-like barrel; n=6, S=10; greek-key
1usf d1usfb_ B:68-75,79-90,107-112,114-123,139-144
1usc d1uscb_ B:68-75,79-90,107-112,114-123,139-144
1eje d1ejea_ A:77-84,88-97,121-125,128-136,152-157
1usc d1usca_ A:68-75,79-90,107-112,114-123,139-144
1usf d1usfa_ A:68-75,79-90,107-112,114-123,139-144
1rz0 d1rz0f_ F:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0a_ A:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0g_ G:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0h_ H:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0c_ C:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0b_ B:64-71,75-84,99-104,106-115,131-136
1i0s d1i0sa_ A:60-68,72-83,101-106,108-118,134-139
1rz0 d1rz0e_ E:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1h_ H:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1d_ D:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1a_ A:64-71,75-84,99-104,106-115,131-136
1rz0 d1rz0d_ D:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1f_ F:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1b_ B:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1c_ C:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1g_ G:64-71,75-84,99-104,106-115,131-136
1rz1 d1rz1e_ E:64-71,75-84,99-104,106-115,131-136
1yoa d1yoaa1 A:64-71,75-85,104-110,113-121,137-142
1wgb d1wgba_ A:64-71,75-85,104-110,113-121,137-142
1i0r d1i0ra_ A:60-68,72-82,101-106,108-118,134-139
2ptf d2ptfa1 A:80-87,89-99,111-116,119-127,152-156
5. b.18.1 Galactose-binding domain-like
Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
2vz3 d2vz3a2 A:14-19,26-33,38-42,51-59,122-130
2vz1 d2vz1a2 A:14-19,26-33,38-42,51-59,122-130
6. b.12.1 Lipase/lipooxygenase domain (PLAT/LH2 domain)
Lipase/lipooxygenase domain (PLAT/LH2 domain) sandwich; 8 strands in 2 sheets; complex topology ! duplication: has weak internal pseudo twofold symmetry
1rrh d1rrha2 A:9-21,48-57,113-120,124-134,140-150
1no3 d1no3a2 A:9-21,48-56,113-120,124-134,139-150
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 729 (enumeration index: query1220) of S5
2rf8 B:75-83,104-113,125-130,141-149,151-160
2rf8 A:75-83,104-113,125-130,141-149,151-160
2xqx B:808-815,824-831,839-843,846-854,920-928
2xqx A:808-815,824-831,839-843,846-854,920-928
2iuk B:1009-1019,1056-1064,1118-1128,1132-1142,1145-1158
2quy D:75-83,101-113,125-130,141-149,151-159
2quy F:75-83,101-113,125-130,141-149,151-159
2quy C:75-83,101-113,125-129,141-149,151-159
2quy A:75-83,101-113,126-130,141-149,151-160
2quy E:75-83,101-113,125-129,141-149,151-159
2quy H:75-83,101-113,125-129,141-149,151-160
2iwm C:78-86,104-116,129-133,144-152,154-163
2iwm B:78-86,104-116,128-133,144-152,154-163
2iwm D:78-86,104-116,129-133,144-152,154-163
2hez B:74-82,103-112,124-129,139-147,148-157
2hez A:74-82,103-112,124-129,139-147,148-157
2z4t A:51-62,68-75,76-82,87-99,101-114
3pv6 B:50-58,81-89,89-97,103-113,115-128
2hf0 A:74-82,103-112,124-129,139-147,148-157
2hf0 B:74-82,103-112,124-129,139-147,148-157
2ww2 B:294-299,358-368,672-676,681-688,690-697
2ww2 A:294-299,358-368,672-676,681-688,690-697
2ww2 C:294-299,358-368,672-676,681-688,690-697
2oqc A:75-83,104-113,125-129,141-149,152-159
2oqc B:75-83,104-113,125-129,141-149,152-159
2bz7 A:38-42,48-60,71-76,80-88,95-102
2rlc A:75-83,104-113,125-130,141-149,151-160
2jda B:9-16,25-32,37-41,42-51,111-121
2jda A:9-16,25-32,37-41,42-51,111-121
2bzd C:508-515,525-532,537-541,550-559,620-628
2yc4 B:10-17,24-31,36-40,43-52,110-118
2yc4 A:10-17,24-31,36-40,43-52,110-118
3nfw D:69-76,77-90,106-111,113-122,138-142
3nfw A:69-76,80-90,106-111,113-122,138-143
3nfw B:69-76,80-90,106-111,113-122,138-142
3nfw C:69-76,80-90,106-111,113-122,138-143
2d36 A:63-70,72-82,99-104,106-115,131-136
3rh7 B:70-77,81-91,107-112,114-123,139-144
3rh7 F:70-77,81-91,107-112,114-123,139-144
3rh7 A:70-77,81-91,107-112,114-123,139-144
3rh7 E:70-77,81-91,107-112,114-123,139-144
3rh7 D:70-77,81-91,107-112,114-123,139-144
3rh7 C:70-77,81-91,107-112,114-123,139-144
2vc9 A:32-37,45-52,57-61,65-72,130-141
2y38 A:61-66,121-128,132-138,145-153,261-270
2wvy C:294-299,358-368,672-676,681-688,690-697
2j1e A:627-634,644-651,656-660,670-677,737-745
2vcb A:32-37,45-52,57-61,65-72,131-141
2icc A:29-41,60-67,75-83,89-101,103-118
2vcc A:32-37,45-52,57-61,65-72,130-141
2z71 C:75-83,101-113,125-130,141-149,151-160
2z71 A:75-83,101-113,126-130,141-149,151-159
3k77 A:5-14,20-27,32-36,41-50,126-134
3k77 G:5-14,20-27,32-36,41-50,126-134
3k77 F:5-14,20-27,32-36,41-50,126-134
3k77 B:5-14,20-27,32-36,41-50,126-134
3k77 E:5-14,20-27,32-39,41-50,126-134
3k77 H:5-14,20-27,32-36,41-50,126-134
3k77 C:5-14,20-27,32-36,41-50,126-134
2qck A:70-77,78-91,106-111,113-122,138-143
2yc2 A:10-17,24-31,36-40,43-52,110-118
2yc2 B:10-17,24-31,36-40,43-52,110-118
2j7m A:627-634,644-651,656-660,670-677,737-745
3k75 C:7-13,20-27,32-36,41-49,126-134
3pft A:70-76,77-89,106-111,114-122,138-143
3pft B:70-76,80-89,106-111,113-122,138-143
2bzc A:38-42,48-60,71-76,80-88,95-102
2npl X:32-40,45-55,56-63,66-78,79-91
2kd7 A:10-16,29-36,41-45,53-61,122-130
3lqa H:33-41,61-68,77-85,91-99,113-124
2jd9 A:9-16,25-32,37-41,42-51,111-121
3mji C:78-86,104-116,129-133,144-152,154-163
3mji D:78-86,104-116,129-133,144-152,154-163
3mji B:78-86,104-116,128-132,144-152,154-163
2bjf A:75-83,104-113,125-130,141-149,151-160
3cvb A:40-44,52-60,69-77,82-90,97-104
2rg2 A:75-83,104-113,125-130,141-149,151-160
2vca A:32-37,45-52,57-61,65-72,130-141
2jjt C:35-43,69-76,76-83,92-101,102-114
2jjt D:35-43,69-76,76-83,92-101,102-114
3bqv A:40-44,52-60,69-77,82-90,97-104
2wq8 A:14-19,26-33,38-42,51-59,122-130
2okx B:206-216,413-421,426-430,435-443,506-514
2bjg B:75-82,104-113,125-130,142-149,151-160
3hbc A:98-106,122-134,149-153,164-172,174-183