1. d.14.1 Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
1uek d1ueka1 A:58-72,75-84,92-110,114-123,123-132
1fwl d1fwlb1 B:62-76,79-88,96-114,118-135,138-148
1fwl d1fwld1 D:62-76,79-88,96-114,118-135,138-148
1h74 d1h74b1 B:62-76,79-88,96-114,118-135,138-148
1fwl d1fwla1 A:62-76,79-88,96-114,118-135,138-148
1h74 d1h74d1 D:62-76,79-88,96-114,118-135,138-148
1h73 d1h73a1 A:62-76,79-88,96-114,118-132,138-148
1h74 d1h74c1 C:62-76,79-88,96-114,118-135,138-148
1fwk d1fwkc1 C:62-76,79-88,96-114,118-135,138-148
1fwk d1fwka1 A:62-76,79-88,96-114,118-135,138-148
1fwl d1fwlc1 C:62-76,79-88,96-114,118-135,138-147
1h74 d1h74a1 A:62-76,79-88,96-114,118-135,138-148
1fwk d1fwkd1 D:62-76,79-88,96-114,118-135,138-148
1fwk d1fwkb1 B:62-76,79-88,96-114,118-135,138-148
1h72 d1h72c1 C:62-76,79-88,96-114,118-135,138-148
1vis d1visa1 A:70-88,93-102,110-128,132-149,152-162
1kkh d1kkha1 A:75-93,98-107,115-133,137-154,157-167
1s4e d1s4eb1 B:73-84,88-92,105-123,127-141,148-158
1oj4 d1oj4b1 B:65-82,87-97,105-123,127-140,139-148
1mg7 d1mg7b1 B:96-112,114-123,132-149,153-169,174-185
1oj4 d1oj4a1 A:65-82,87-97,105-123,127-139,139-148
1mg7 d1mg7a1 A:96-112,114-123,132-149,153-169,174-185
1wuu d1wuuc1 C:104-117,124-132,140-158,162-179,183-193
1wuu d1wuub1 B:104-117,124-132,140-158,162-179,183-193
1wuu d1wuua1 A:104-117,124-132,140-158,162-179,183-193
1wuu d1wuud1 D:104-117,124-132,140-158,162-179,183-193
1pie d1piea1 A:99-115,121-129,137-155,159-176,180-190
2. e.22.1 Dehydroquinate synthase-like
Dehydroquinate synthase-like 2 domains: (1) alpha/beta of a Rossmann-fold topology, binds NAD (2) multihelical array
1ujn d1ujna_ A:39-51,112-119,119-130,155-162,163-182
1ujn d1ujnb_ B:39-51,112-119,119-130,155-162,196-218
1ujn d1ujna_ A:39-51,112-119,119-130,155-162,196-218
1dqs d1dqsa_ A:47-66,133-140,140-147,176-183,235-258
3. a.269.1 FtsH protease domain-like contains zincin-like (
FtsH protease domain-like array of 6 helices and a 2-stranded beta-ribbon
2cea d2ceac1 C:413-435,441-445,452-459,468-481,495-516
2cea d2ceac1 C:413-435,441-445,452-459,480-491,495-516
4. c.107.1 DHH phosphoesterases constituent families have similar domain organization with variable interdomain linker and spatial arrangement of the domains !
DHH phosphoesterases consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456 ! Domain 2 has mixed sheet of 5 strands, order 12345; strands 1 & 4 are antiparallel to the rest
2haw d2hawb1 B:13-31,69-75,118-131,135-151,159-174
1wpm d1wpmb_ B:13-31,69-75,118-131,135-151,159-174
1wpn d1wpnb_ B:13-31,69-75,118-131,135-151,159-174
2haw d2hawa1 A:13-31,69-75,118-131,135-151,159-174
1wpm d1wpma_ A:13-31,69-75,118-131,135-151,159-174
1k23 d1k23b_ B:13-31,69-75,118-131,135-151,159-174
1k23 d1k23d_ D:13-31,69-75,118-131,135-151,159-174
1wpn d1wpna_ A:13-31,69-75,118-131,135-151,159-174
1k23 d1k23a_ A:13-31,69-75,118-131,135-151,159-174
1k23 d1k23c_ C:13-31,69-75,118-131,135-151,159-174
1i74 d1i74b_ B:12-30,69-75,118-131,135-151,159-174
1wpp d1wppb_ B:13-32,71-77,120-133,137-153,161-176
1wpp d1wppa_ A:13-32,71-77,120-133,137-153,161-176
1i74 d1i74a_ A:12-30,69-75,118-131,135-151,159-174
1k20 d1k20a_ A:13-32,71-77,120-133,137-153,161-176
2haw d2hawb1 B:13-31,89-97,118-131,135-151,159-174
1k23 d1k23a_ A:13-31,89-97,118-131,135-151,159-174
1wpn d1wpna_ A:13-31,89-97,118-131,135-151,159-174
1k23 d1k23c_ C:13-31,89-97,118-131,135-151,159-174
2haw d2hawa1 A:13-31,89-97,118-131,135-151,159-174
1k23 d1k23b_ B:13-31,89-97,118-131,135-151,159-174
1k20 d1k20b_ B:13-32,71-77,120-133,137-153,161-176
1k23 d1k23d_ D:13-31,89-97,118-131,135-151,159-174
1wpn d1wpnb_ B:13-31,89-97,118-131,135-151,159-174
1wpm d1wpmb_ B:13-31,89-97,118-131,135-151,159-174
1wpm d1wpma_ A:13-31,89-97,118-131,135-151,159-174
1i74 d1i74b_ B:12-30,89-97,118-131,135-151,159-174
1wpp d1wppa_ A:13-32,91-99,120-133,137-153,161-176
1wpp d1wppb_ B:13-32,91-99,120-133,137-153,161-176
1k20 d1k20a_ A:13-32,91-99,120-133,137-153,161-176
1ir6 d1ir6a_ A:82-100,130-136,186-203,207-222,227-243
1k20 d1k20b_ B:13-32,91-99,120-133,137-153,161-176
1i74 d1i74a_ A:12-30,89-97,118-131,135-151,159-174
1ir6 d1ir6a_ A:82-100,153-160,186-203,207-222,227-243
5. c.42.1 Arginase/deacetylase
Arginase/deacetylase 3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
1c3p d1c3pa_ A:26-39,121-126,298-315,323-334,343-351
1c3s d1c3sa_ A:26-39,121-126,298-315,323-334,343-351
6. c.64.1 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 231456; strand 3 is antiparallel to the rest
2c3o d2c3oa4 A:429-446,485-492,558-572,575-592,595-614
7. c.86.1 Phosphoglycerate kinase
Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456
1vpe d1vpea_ A:33-51,139-145,153-164,169-185,388-395
13pk d13pkd_ D:37-54,160-166,174-185,191-207,410-417
13pk d13pkc_ C:37-54,160-166,174-185,191-207,410-417
13pk d13pkb_ B:37-54,160-166,174-185,191-207,410-417
13pk d13pka_ A:37-54,160-166,174-185,191-207,410-417
1ltk d1ltka_ A:36-54,158-164,172-179,187-203,407-414
1ltk d1ltkc_ C:36-54,158-164,172-179,187-203,407-414
1ltk d1ltkb_ B:37-54,158-164,172-179,187-203,407-414
8. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1gin d1gina_ A:284-295,305-310,311-323,331-338,392-407
9. d.92.1 Metalloproteases ("zincins"), catalytic domain
Zincin-like contains mixed beta sheet with connection over free side of the sheet
1r1h d1r1ha_ A:432-458,549-555,569-590,639-669,680-694
1r1j d1r1ja_ A:432-458,549-555,569-590,639-669,680-694
2qpj d2qpja1 A:432-458,549-555,569-590,639-669,680-694
1dmt d1dmta_ A:432-458,549-555,569-590,639-669,680-694
1y8j d1y8ja1 A:432-458,549-555,569-590,639-669,680-694
1r1i d1r1ia_ A:432-458,549-555,569-590,639-669,680-694
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1086 (enumeration index: query1223.1857) of S5
2a2d A:106-123,129-137,145-163,167-183,187-197
3qt7 A:66-85,89-97,105-123,127-140,139-148
3qt7 B:66-85,89-98,105-123,127-140,139-148
2v2q A:60-74,78-86,94-112,116-129,128-137
2v2q B:60-74,78-85,94-112,116-129,128-137
2cw6 B:52-67,254-260,277-289,295-311,316-323
3zuk A:353-375,459-465,479-497,553-580,591-605
3gon A:60-81,86-93,105-123,127-143,148-157
3mp5 B:52-67,254-260,277-289,295-311,316-323
3oz7 A:36-54,158-164,172-179,187-203,407-414
3oz7 B:36-54,158-164,172-179,187-203,407-414
2hk2 A:66-85,88-97,105-123,127-140,139-148
2hk2 B:66-85,88-97,105-123,127-140,139-148
3clh B:41-49,113-120,120-127,156-163,164-183
3clh A:41-49,113-120,120-131,156-163,164-184
2qb8 B:39-60,140-148,168-182,191-204,211-227
2qb8 A:39-60,119-127,168-182,191-204,211-227
2qb8 A:39-60,140-148,168-182,191-204,211-227
2qb8 B:39-60,119-127,168-182,191-204,211-227
2hke B:75-89,96-105,113-131,135-145,144-153
2hke A:75-89,96-105,113-131,135-145,144-153
2zxo A:82-100,130-136,186-203,207-222,225-243
2zxo A:82-100,153-159,186-203,207-222,225-243
3dev A:27-46,77-84,125-138,144-160,168-182
3dev B:27-46,77-84,125-138,144-160,168-182
3dev B:27-46,99-107,125-138,144-160,168-182
3dev A:27-46,99-107,125-138,144-160,168-182
2v34 B:60-74,78-85,94-112,116-129,128-137
2v34 A:60-74,78-86,94-112,116-129,128-137
2eb0 B:11-26,60-66,108-120,133-149,157-172
2qb7 B:39-60,140-148,168-182,191-204,211-227
2qb7 A:39-59,119-127,168-182,191-204,211-227
2qb7 A:39-59,140-148,168-182,191-204,211-227
2qb7 B:39-60,119-127,168-182,191-204,211-227
2raa A:19-35,74-79,136-150,153-165,170-188
3mp3 B:52-67,254-260,277-289,295-311,316-323
3k70 D:152-165,165-171,275-287,345-352,598-606
3o4x H:953-972,979-983,983-994,1014-1025,1113-1171
3k85 A:77-92,97-105,113-131,135-152,156-166
3k85 B:77-92,97-105,113-131,135-152,156-166
3qt5 A:66-85,88-97,105-123,127-140,139-148
3qt5 B:66-85,89-98,105-123,127-140,139-148
3on3 B:16-33,71-76,126-143,146-159,159-181
3on3 A:16-33,71-76,126-143,146-158,159-180
3dwb A:457-482,573-579,593-611,660-690,701-715
3dma A:33-51,93-99,144-157,163-179,187-201
3dma A:33-51,118-126,144-157,163-179,187-201
2ftp A:26-41,228-234,251-263,269-285,290-300
2ww4 B:65-82,87-97,105-123,127-140,139-148
2ww4 A:65-82,87-97,105-123,127-140,139-148
2qb6 B:39-60,140-148,168-182,191-204,211-227
2qb6 A:39-60,119-127,168-182,191-204,211-227
2qb6 A:39-60,140-148,168-182,191-204,211-227
2qb6 B:39-60,119-127,168-182,191-204,211-227
2gru A:46-62,122-129,129-136,165-172,173-192
2gru B:46-61,122-129,129-136,165-172,210-230
2gru A:46-62,122-129,129-136,165-172,210-230
2gru B:46-61,122-129,129-136,165-172,173-192
3t8v A:418-441,447-455,483-508,514-535,536-558
2aj4 A:122-143,153-161,169-188,194-210,215-224
2aj4 B:122-143,152-161,169-188,194-210,215-224
3kwv F:50-67,78-85,140-164,209-227,226-238
3kwv C:50-67,78-85,140-164,209-227,226-238
2iw4 B:13-31,89-97,118-131,135-151,159-174
2iw4 B:13-31,69-75,118-131,135-151,159-174
2iw4 A:13-31,89-97,118-131,135-151,159-174
2iw4 A:13-31,69-75,118-131,135-151,159-174
3k17 C:74-95,100-108,120-139,142-159,163-172
3k17 D:74-95,100-108,120-139,142-159,163-172
3k17 A:74-95,100-108,120-139,142-159,163-172
3k17 B:74-95,100-108,120-139,142-159,163-172
3q44 A:418-441,447-455,483-508,514-535,536-558
3sks A:283-299,314-319,347-370,379-398,402-421
2o9j A:308-330,330-334,335-345,739-782,813-820
2cun B:32-49,142-148,156-167,171-187,392-405
2cun A:32-49,142-148,156-167,171-187,392-405
3g2e C:14-30,70-75,127-144,147-160,160-181
3g2e B:14-30,70-75,127-144,147-160,160-181
2a2c A:106-123,129-137,145-163,167-183,187-197
2p9q B:35-53,158-164,172-179,187-203,407-414
2zxr A:82-100,153-159,186-203,207-222,225-243
2zxr A:82-100,130-136,186-203,207-222,225-243
3lto B:77-96,99-109,116-138,143-156,155-164
3lto A:77-96,99-108,116-138,143-156,155-164
2d2x A:46-62,122-129,129-136,165-172,210-230
2d2x A:46-62,122-129,129-136,165-172,173-191
2d2x B:46-62,122-129,129-136,165-172,173-192
2d2x B:46-62,122-129,129-136,165-172,210-230
2enx B:13-32,91-99,120-133,137-153,161-176
2enx B:13-32,71-77,120-133,137-153,161-176
2enx A:13-32,91-99,120-133,137-153,161-176
2enx A:13-32,71-77,120-133,137-153,161-176
3ot1 A:18-33,70-77,159-176,176-188,190-204
3ot1 B:18-33,103-109,159-176,176-188,190-200
3ot1 A:18-33,102-109,159-176,176-188,190-204
3ot1 B:18-33,70-77,159-176,176-188,190-200
2x7i A:67-80,84-92,100-118,122-139,142-152
3efo A:27-35,456-463,518-537,538-558,571-587
2hk3 B:66-85,88-97,105-123,127-140,139-148
2hk3 A:66-85,88-97,105-123,127-140,139-148
2zxp A:82-100,153-159,186-203,207-222,225-243
2zxp A:82-100,130-136,186-203,207-222,225-243
2zgv A:35-53,158-164,172-179,187-203,407-414
2vf3 A:60-74,78-86,94-112,116-129,128-137
2vf3 B:60-74,78-86,94-112,116-129,128-137
2v8p A:60-74,78-85,94-112,116-129,128-137
2v8p B:60-74,78-86,94-112,116-129,128-137
3qt8 A:66-85,89-97,105-123,127-140,139-148
3qt8 B:66-85,89-98,106-123,127-140,139-148
2ie8 A:31-49,136-142,150-161,166-181,382-389
2v2v A:60-74,78-86,94-112,116-129,128-137
2v2v B:60-74,78-85,94-112,116-129,128-137
3qt6 A:66-85,89-97,105-123,127-140,139-148
3qt6 B:66-85,89-98,106-123,127-140,139-148
3oza B:36-54,158-164,172-179,187-203,407-414
3oza A:36-54,158-164,172-179,187-203,407-414
2r3v B:102-124,128-136,144-162,178-198,202-211
2r3v A:102-124,128-136,144-162,178-197,202-211
2r3v D:102-124,128-136,144-162,178-198,202-211
2r3v C:102-124,128-136,144-162,178-198,201-211
3fpb A:308-330,330-334,335-345,739-782,813-820
2xe7 A:35-53,158-164,172-179,187-203,407-414
2yb9 A:432-458,549-555,569-590,639-669,680-694
2v2z B:60-74,78-85,94-112,116-129,128-137
2v2z A:60-74,78-86,94-112,116-129,128-137
3eg9 A:27-35,456-464,518-537,538-558,571-587
2gs8 A:68-83,89-96,105-123,127-140,139-148