List of the counted superfamily hits for pattern ID: 1239 (enumeration index: query1230.1238.1423.1863.2673) of S5

List of the counted superfamily hits for pattern ID: 1239 (enumeration index: query1230.1238.1423.1863.2673) of S5

SCOP superfamily ID superfamiily description corresponding fold description
a.118.6Protein prenylyltransferase alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.1ARM repeat alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.8TPR-like alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
e.25.1Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 3 domains: (1 and 2) alpha+beta; (3) mostly alpha, inserted in domain 2
a.118.4Lipovitellin-phosvitin complex, superhelical domain alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.65.1Annexin duplication: consists of four domains of the same fold ! Annexin 5 helices; folded leaf, closed
a.118.9ENTH/VHS domain alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.25TROVE domain-like consist of two superhelical sections arranged like a horse-shoe ! alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.15Aconitase B, N-terminal domain alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.20Hypothetical protein ST1625 alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.24Pseudo ankyrin repeat-like contains three helices per turn of the superhelix ! alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.102.3Chondroitin AC/alginate lyase incomplete toroid ! alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
a.209.1ADP-ribosylglycohydrolase ADP-ribosylglycohydrolase multihelical; bundle
a.118.5Bacterial muramidases alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
d.377.1Rv2827c C-terminal domain-like Rv2827c C-terminal domain-like multihelical array flanked by two three-stranded mixed beta-sheets
a.116.1GTPase activation domain, GAP GTPase activation domain, GAP multihelical
a.118.12Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.18HCP-like alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.102.1Six-hairpin glycosidases alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
d.211.1Ankyrin repeat repeats organized in elongated structures ! beta-hairpin-alpha-hairpin repeat multiple repeats of beta(2)-alpha(2) motif
a.118.17Cullin repeat-like alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.102.4Terpenoid cyclases/Protein prenyltransferases alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
a.260.1Rhabdovirus nucleoprotein-like Rhabdovirus nucleoprotein-like multihelical, consist of two helical domains; each domain contains a buried helix
a.102.6LanC-like comprises seven hairpinsalpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
a.117.1Ras GEF Ras GEF multihelical
a.118.22IP3 receptor type 1 binding core, domain 2 alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
e.6.1Acyl-CoA dehydrogenase NM domain-like flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles) ! Acyl-CoA dehydrogenase NM domain-like 2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
a.89.1Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Methyl-coenzyme M reductase alpha and beta chain C-terminal domain multihelical bundle; contains buried central helix
a.211.1HD-domain/PDEase-like HD-domain/PDEase-like multihelical; consists of two different alpha-helical bundles
a.268.1PTPA-like PTPA-like multihelical
a.102.2Seven-hairpin glycosidases alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
a.118.714-3-3 protein alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
e.40.1Cullin homology domain Cullin homology domain 3 domains: (1) 4-helical bundle; (2) alpha+beta; (3) "winged helix"-like
a.118.26MgtE N-terminal domain-like made of short helices; approximately 2.5 helices per turn of superhelixalpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.118.11Cytochrome c oxidase subunit E alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
a.146.1Telomeric repeat binding factor (TRF) dimerisation domain Telomeric repeat binding factor (TRF) dimerisation domain multihelical; can be divided into an alpha-alpha superhelix domain and a long alpha-hairpin dimerization domain
a.102.5Family 10 polysaccharide lyase alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
f.1.3delta-Endotoxin (insectocide), N-terminal domain Toxins' membrane translocation domains multi-helical domains of various folds which is thought to unfold in the membrane
a.29.11PA2201 N-terminal domain-like Bromodomain-like 4 helices; bundle; minor mirror variant of up-and-down topology
a.266.1Indolic compounds 2,3-dioxygenase-like contains heme-dependent enzymes ! Indolic compounds 2,3-dioxygenase-like multihelical; bundle, contains interrupted helices
a.29.3Acyl-CoA dehydrogenase C-terminal domain-like multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel ! Bromodomain-like 4 helices; bundle; minor mirror variant of up-and-down topology