1. c.27.1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like
1brw d1brwa2 A:89-103,147-152,248-262,303-317,319-326
1uou d1uoua2 A:124-137,181-186,282-296,336-351,353-363
1uou d1uoua2 A:124-137,138-144,282-296,336-351,353-363
2. a.102.1 Six-hairpin glycosidases
alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
1h12 d1h12a_ A:76-91,119-125,142-161,167-184,205-216
1h14 d1h14a_ A:76-91,119-125,142-161,167-184,205-216
2b4f d2b4fa1 A:76-91,119-125,142-161,167-184,205-216
1fp3 d1fp3b_ B:245-264,284-288,312-331,332-351,379-402
2afa d2afaf1 F:247-269,298-303,317-336,337-356,383-393
2afa d2afac1 C:247-269,298-303,317-336,337-356,383-393
2afa d2afae1 E:247-269,298-303,317-336,337-356,383-393
2afa d2afad1 D:247-269,298-303,317-336,337-356,383-393
2afa d2afaa1 A:247-269,298-303,317-336,337-356,383-393
1v7v d1v7va1 A:502-523,551-560,576-587,590-606,642-657
1v7x d1v7xa1 A:502-523,551-560,576-587,590-606,642-657
3. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6b_ B:588-601,603-609,622-640,641-657,699-713
1ej6 d1ej6c_ C:588-600,603-608,622-640,641-657,699-713
4. d.68.2 EPT/RTPC-like
IF3-like beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
1rf5 d1rf5d_ D:341-355,374-380,383-398,406-415,414-427
1rf5 d1rf5b_ B:341-355,375-380,383-398,406-415,414-427
5. a.102.4 Terpenoid cyclases/Protein prenyltransferases
alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
1ltx d1ltxb_ B:142-157,179-183,190-205,211-223,238-253
6. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
1uf2 d1uf2a_ A:349-367,369-375,384-399,404-424,466-478
1uf2 d1uf2b_ B:349-367,369-375,384-399,404-424,466-478
7. d.79.2 Tubulin C-terminal domain-like
Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
1tub d1tubb2 B:143-162,166-172,179-197,381-403,414-437
1tvk d1tvkb2 B:141-160,163-171,180-190,372-392,404-427
8. i.10.1 Microtubule complexes
Microtubule complexes
1ia0 d1ia0b_ B:143-162,166-172,179-197,381-403,414-437
3du7 d3du7b1 B:143-162,165-174,182-198,382-402,414-437
1ffx d1ffxc_ C:143-162,164-174,179-193,382-402,416-439
1ffx d1ffxa_ A:143-162,164-174,179-193,382-402,416-439
9. c.86.1 Phosphoglycerate kinase
Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456
1php d1phpa_ A:127-138,139-145,153-164,169-185,385-392
1v6s d1v6sb_ B:124-136,136-142,150-161,166-181,382-390
1v6s d1v6sa_ A:124-136,136-142,150-161,166-182,382-390
1vpe d1vpea_ A:127-139,139-145,153-164,169-185,388-395
10. c.1.19 Cobalamin (vitamin B12)-dependent enzymes
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
6req d6reqd1 D:213-225,233-238,247-270,272-280,289-312
1req d1reqa1 A:213-233,234-242,251-274,276-284,293-316
4req d4reqa1 A:213-233,234-242,251-274,276-284,293-316
7req d7reqa1 A:213-233,234-242,251-274,276-284,293-316
11. c.32.1 Tubulin nucleotide-binding domain-like
Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
1z2b d1z2bd1 D:143-162,165-173,180-198,382-402,414-437
1sa0 d1sa0d1 D:143-162,165-173,180-198,382-402,414-437
1sa0 d1sa0b1 B:143-162,165-173,180-198,382-402,414-437
2bto d2btob1 B:145-164,167-175,183-200,377-397,409-432
1z2b d1z2bb1 B:143-162,165-173,180-198,382-402,414-437
1sa1 d1sa1d1 D:143-162,165-173,180-198,382-402,414-437
1sa1 d1sa1b1 B:143-162,165-173,180-198,382-402,414-438
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1087 (enumeration index: query1231.1864) of S5
2dsj A:88-102,146-151,247-261,296-310,312-319
2dsj A:88-102,103-109,247-261,296-310,312-319
2jjb C:334-356,379-383,402-412,415-431,453-468
2jjb B:334-356,379-383,402-412,415-431,453-468
2jjb A:334-356,379-383,402-412,415-431,453-468
3qfo A:15-30,32-41,46-57,65-77,101-111
3nkh B:23-44,62-68,161-177,179-188,191-210
3nkh A:23-44,62-68,161-177,179-188,191-210
2vpn B:44-55,58-63,63-72,71-80,280-293
3hke B:143-162,165-173,180-198,382-402,414-437
3hke D:143-162,165-173,180-198,382-402,414-437
3km9 B:1184-1200,1224-1228,1244-1262,1263-1279,1286-1305
3km9 A:1184-1200,1224-1228,1244-1262,1263-1279,1286-1305
3qxq A:114-133,160-164,184-195,195-214,240-255
3ou8 A:227-238,240-244,260-269,285-298,300-315
3ou8 B:227-238,240-244,260-269,285-298,300-315
3hkc C:143-162,165-173,180-195,382-402,414-436
3hkc A:143-162,165-173,180-195,382-402,414-436
3kz4 A:370-389,391-396,400-415,420-441,465-478
3clh A:94-110,113-120,120-131,156-163,164-184
3iix A:206-221,223-230,245-261,268-276,277-286
3qfm B:15-30,32-41,46-58,65-77,101-111
3edl G:143-162,165-173,180-198,382-402,414-437
3q3v B:128-140,140-146,154-165,173-189,388-395
3q3v A:128-140,140-146,154-165,173-189,388-395
3k1q B:524-538,540-545,559-577,578-594,636-650
3k1q C:524-538,540-545,559-577,578-594,636-650
3qfn A:15-30,32-41,46-57,65-77,101-111
3qfn B:15-30,32-41,46-58,65-77,101-111
3iiz A:206-221,223-230,245-261,268-276,277-286
2v8j A:292-315,336-340,378-393,394-409,431-446
3rqz B:12-24,27-36,41-54,60-69,91-101
3rqz A:12-24,27-36,41-54,60-69,91-101
3ryf B:143-162,165-173,180-198,382-402,414-438
3ryf D:143-162,165-173,180-198,382-402,414-438
3gt5 A:118-136,155-159,178-197,198-221,253-272
3gzu A:370-389,391-396,400-415,420-441,465-478
2j0f C:124-137,181-186,282-296,337-351,353-363
2j0f D:124-137,181-186,282-296,336-351,353-363
2j0f B:124-137,181-186,282-296,336-351,353-363
2j0f A:124-137,138-144,282-296,336-351,353-363
2j0f A:124-137,181-186,282-296,336-351,353-363
3ciw A:206-221,223-230,245-261,268-276,277-286
3bpt A:146-155,163-167,179-188,190-199,303-320
3n2g B:143-162,165-173,180-198,382-402,414-437
3n2g D:143-162,164-173,180-198,382-402,414-437
2vpo B:44-55,58-63,63-72,71-80,280-293
3ryi B:143-162,165-173,182-198,382-402,414-438
3ryi D:143-162,165-173,180-198,382-402,414-438
3n09 A:370-389,391-396,400-415,420-441,465-478
3ryc B:143-162,165-173,182-198,382-402,414-438
3ryc D:143-162,165-173,180-198,382-402,414-438
3n2k D:143-162,165-173,180-198,382-402,414-437
3n2k B:143-162,165-173,180-198,381-402,414-437
3kls A:1184-1200,1224-1228,1244-1262,1267-1279,1286-1305
3kls B:1184-1200,1224-1228,1244-1262,1267-1279,1286-1305
2dfj A:12-24,30-39,44-56,64-76,94-105
2dfj B:12-24,30-39,44-56,64-76,92-105
3ryh D:143-162,165-173,180-198,382-402,414-438
3ryh B:143-162,165-173,182-198,382-402,414-438
3i3n B:150-164,164-170,169-184,185-200,204-216
3i3n A:150-164,164-170,169-184,185-200,204-216
3cu7 A:1184-1200,1224-1228,1244-1262,1263-1279,1286-1305
3cu7 B:1184-1200,1224-1228,1244-1262,1263-1279,1286-1305
3pao A:227-238,240-244,260-269,285-298,300-315
3pbm A:227-238,240-244,260-269,285-298,300-315
3pbm B:227-238,240-244,260-269,285-298,300-315
2wk6 A:124-137,181-186,282-296,336-351,353-363
2wk6 B:124-137,181-186,282-296,338-351,353-364
3f2d A:687-695,695-700,716-735,780-789,792-812
3g79 B:122-137,139-147,150-167,227-260,291-309
3g79 A:122-137,139-147,150-167,227-260,291-309
3pan A:227-238,240-244,260-269,285-298,300-315
3cix A:206-221,223-230,245-261,268-276,277-286
2rgk D:245-267,296-301,314-333,334-353,380-390
2rgk A:245-267,296-301,314-333,334-353,380-390
2rgk F:245-267,296-301,314-333,334-353,380-390
2rgk C:245-267,296-301,314-333,334-353,380-390
3pvm A:1007-1029,1064-1068,1075-1094,1096-1112,1132-1156
3pvm A:1184-1200,1224-1228,1244-1262,1267-1279,1286-1305
3pvm C:1007-1029,1064-1068,1075-1094,1096-1112,1132-1156
3pvm C:1184-1200,1224-1228,1244-1262,1267-1279,1286-1305
3cky A:70-80,91-98,101-116,165-199,237-256
3cky B:70-80,90-98,101-116,165-199,237-256
3hkd B:143-162,165-173,182-198,382-402,414-437
3hkd D:143-162,165-173,182-198,382-402,414-437
3p8c B:783-803,804-809,844-874,899-933,972-981
3prx A:1007-1029,1064-1068,1075-1094,1096-1112,1132-1156
3prx A:1184-1200,1224-1228,1244-1262,1267-1278,1286-1305
3prx C:1007-1029,1064-1068,1075-1090,1096-1112,1132-1156
3hkb B:144-162,165-173,180-198,382-402,414-437
3hkb D:143-162,165-173,180-198,382-402,414-437
3hkb A:143-162,165-173,180-195,382-402,414-437
3hkb C:143-162,165-173,180-195,382-402,414-437
3rys A:230-241,243-247,263-272,288-301,303-318
3rys B:230-241,243-247,263-272,288-301,303-318
3fr7 A:201-209,220-226,226-237,307-324,391-409
2z07 B:234-256,276-280,299-309,312-331,355-370
2zbl A:245-267,296-301,314-333,334-353,380-390
2zbl C:245-267,296-301,314-333,334-353,380-390
2zbl E:245-267,296-301,314-333,334-353,380-390
2zbl D:245-267,296-301,314-333,334-353,380-390
2zbl B:245-267,296-301,314-333,334-353,380-390
3iyl X:524-538,541-546,559-577,578-594,636-650
2ie8 A:124-136,136-142,150-161,166-181,382-389
3e82 D:84-99,100-105,111-126,327-348,356-368
3e82 A:84-99,100-105,111-126,327-348,356-368
3e82 B:84-99,100-105,111-126,327-348,356-368
3e82 E:84-99,100-105,111-126,327-348,356-368
3d1j A:103-123,154-160,197-205,212-222,226-239
2wk5 C:124-137,181-186,282-296,337-351,353-363
2wk5 B:124-137,181-186,282-296,337-351,353-364
2wk5 D:123-137,181-186,282-296,337-351,353-361
2wk5 A:123-137,181-186,282-296,337-351,353-364
3h5q A:89-103,147-153,248-262,303-317,319-326
1tvk A:143-162,164-173,182-198,382-402,414-439
3e22 B:143-162,165-173,180-198,382-402,414-437
3du7 D:143-162,165-174,182-198,382-402,414-437