1. c.43.1 CoA-dependent acyltransferases
CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
1t1u d1t1ua2 A:546-552,557-562,569-578,579-588,595-616
1s5o d1s5oa2 A:529-536,540-545,552-561,562-571,578-599
2h3p d2h3pa2 A:550-557,561-566,573-582,583-592,599-622
1nm8 d1nm8a2 A:529-535,540-545,552-561,562-571,578-599
2h3p d2h3pb2 B:550-557,561-566,573-582,583-592,599-622
1t7q d1t7qa2 A:550-556,561-566,573-582,583-592,599-622
1t7q d1t7qb2 B:550-557,561-566,573-582,583-592,599-622
1ndi d1ndib2 B:550-556,561-566,573-582,583-592,599-622
2h3w d2h3wa2 A:550-556,561-566,573-582,583-592,599-622
1ndb d1ndbb2 B:550-556,561-566,573-582,583-592,599-622
1q6x d1q6xb2 B:546-552,557-562,569-578,579-588,595-617
2h3u d2h3ua2 A:550-556,561-566,573-582,583-592,599-622
1t7n d1t7na2 A:550-556,561-566,573-582,583-592,599-622
1q6x d1q6xa2 A:546-552,557-562,569-578,579-588,595-617
1ndb d1ndba2 A:550-557,561-566,573-582,583-592,599-622
1t7o d1t7oa2 A:550-556,561-566,573-582,583-592,599-622
2h3w d2h3wb2 B:550-556,561-566,573-582,583-592,599-622
2h3u d2h3ub2 B:550-557,561-566,573-582,583-592,599-622
1ndf d1ndfa2 A:550-556,561-566,573-582,583-592,599-622
1ndf d1ndfb2 B:550-556,561-566,573-582,583-592,599-622
1ndi d1ndia2 A:550-556,561-566,573-582,583-592,599-622
1q9j d1q9ja2 A:341-346,359-371,377-385,386-394,398-417
1q9j d1q9jb2 B:341-346,358-371,377-385,386-394,398-417
1q23 d1q23k_ K:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5c_ C:141-149,153-161,169-180,181-193,197-215
1q23 d1q23j_ J:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5d_ D:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5i_ I:141-149,153-161,169-180,181-193,197-215
1q23 d1q23e_ E:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5b_ B:141-149,153-161,169-180,181-193,197-215
1q23 d1q23c_ C:141-149,153-161,169-180,181-193,197-215
1q23 d1q23i_ I:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5g_ G:141-149,153-161,169-180,181-193,197-215
1q23 d1q23b_ B:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5j_ J:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5l_ L:141-149,153-161,169-180,181-193,197-215
1q23 d1q23d_ D:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5f_ F:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5k_ K:141-149,153-161,169-180,181-193,197-215
1q23 d1q23l_ L:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5h_ H:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5a_ A:141-149,153-161,169-180,181-193,197-215
1q23 d1q23g_ G:141-149,153-161,169-180,181-193,197-215
1q23 d1q23h_ H:141-149,153-161,169-180,181-193,197-215
1q23 d1q23a_ A:141-149,153-161,169-180,181-193,197-215
1pd5 d1pd5e_ E:141-149,153-161,169-180,181-193,197-215
1q23 d1q23f_ F:141-149,153-161,169-180,181-193,197-215
2. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family,
Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
1mf8 d1mf8a_ A:77-82,143-149,187-192,194-200,262-273
1jk7 d1jk7a_ A:51-56,117-123,161-166,168-174,229-240
1mf8 d1mf8a_ A:77-82,112-120,187-192,194-200,262-273
1jk7 d1jk7a_ A:51-56,86-92,161-166,168-174,229-240
1u32 d1u32a_ A:51-56,117-123,161-166,168-174,229-240
2bcd d2bcda1 A:51-56,117-123,161-166,168-174,229-240
1wao d1wao42 4:225-230,296-302,340-345,347-353,408-419
1wao d1wao32 3:225-230,296-302,340-345,347-353,408-419
1wao d1wao42 4:225-230,265-273,340-345,347-353,408-419
1wao d1wao32 3:225-230,265-273,340-345,347-353,408-419
1mf8 d1mf8a_ A:77-82,84-93,187-192,194-200,262-273
3dw8 d3dw8c1 C:44-49,110-116,155-160,162-168,222-233
1s95 d1s95b_ B:225-230,296-302,340-345,347-353,408-419
3dw8 d3dw8f1 F:44-49,110-116,155-160,162-168,222-233
1u32 d1u32a_ A:51-56,86-94,161-166,168-174,229-240
3dw8 d3dw8c1 C:44-49,79-85,155-160,162-168,222-233
3dw8 d3dw8f1 F:44-49,79-85,155-160,162-168,222-233
3dw8 d3dw8f1 F:44-49,50-59,155-160,162-168,222-233
3dw8 d3dw8c1 C:44-49,50-60,155-160,162-168,222-233
1s95 d1s95b_ B:225-230,265-273,340-345,347-353,408-419
1wao d1wao42 4:225-230,233-242,340-345,347-353,408-419
2bcd d2bcda1 A:51-56,86-94,161-166,168-174,229-240
1wao d1wao32 3:225-230,233-242,340-345,347-353,408-419
1jk7 d1jk7a_ A:51-56,58-67,161-166,168-174,229-240
1u32 d1u32a_ A:51-56,58-67,161-166,168-174,229-240
1s95 d1s95b_ B:225-230,233-242,340-345,347-353,408-419
2bcd d2bcda1 A:51-56,58-67,161-166,168-174,229-240
2bdx d2bdxa1 A:52-56,117-123,162-166,168-174,229-240
2bdx d2bdxa1 A:52-56,57-67,162-166,168-174,229-240
2bdx d2bdxa1 A:52-56,86-94,162-166,168-174,229-240
3. c.67.1 PLP-dependent transferases
PLP-dependent transferase-like main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
2fni d2fnia1 A:149-156,160-164,173-179,189-196,197-210
2fni d2fnib1 B:149-156,160-164,173-179,189-196,197-210
2fn6 d2fn6b1 B:149-156,160-164,173-181,188-196,197-210
1mdx d1mdxa_ A:155-162,166-170,178-186,193-201,202-215
1mdo d1mdoa_ A:155-162,166-170,178-186,193-201,202-215
1mdz d1mdza_ A:155-162,166-170,178-186,193-201,202-215
4. d.340.1 CofE-like
CofE-like consists of two different domains; d1: beta-alpha-beta-alpha-beta(2)-alpha-beta, mixed sheet of 5 strands, order:15234, strands 2 and 3 are parralel; d2 is inserted in d1 after strand 2 and comprises a helix-turn-helix motif and two 3-stranded sheets
2g9i d2g9ib1 B:32-40,116-121,143-153,159-169,194-207
2g9i d2g9ia1 A:32-40,116-121,143-153,159-169,194-207
2phn d2phna1 A:31-40,116-121,142-153,159-169,194-207
2phn d2phnb1 B:31-40,116-121,142-153,159-169,194-207
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 382 (enumeration index: query1251.1331.2505) of S5
2fy3 A:536-542,547-552,559-568,569-578,585-606
3fot A:433-442,455-470,475-484,485-496,499-518
2fy2 A:536-543,547-552,559-568,569-578,585-607
2ii5 D:334-341,346-350,357-372,376-391,395-413
2ii5 E:334-340,346-350,357-369,379-391,395-413
2ii5 A:334-340,346-350,357-369,379-391,395-413
2ii5 C:334-340,346-350,357-369,379-391,395-413
2ii5 F:334-341,346-350,357-367,376-391,395-413
2ii5 B:334-340,346-350,357-369,379-391,395-413
3egg A:51-56,86-94,161-166,168-174,229-240
3egg A:51-56,117-123,161-166,168-174,229-240
3egg A:51-56,58-67,161-166,168-174,229-240
2ii4 C:334-340,346-350,357-369,379-391,395-413
2ii4 F:334-340,346-350,357-369,379-391,395-413
2ii4 E:334-340,346-350,357-369,379-391,395-413
2ii4 A:334-340,346-350,357-369,379-391,395-413
2ii4 D:334-340,346-350,357-369,379-391,395-413
2ii4 B:334-340,346-350,357-369,379-391,395-413
2rcu B:586-591,596-602,609-618,619-628,632-653
2rcu A:586-591,596-602,609-618,619-628,632-653
3h66 B:225-230,296-302,340-345,347-353,408-419
3h66 B:225-230,265-273,340-345,347-353,408-419
3h66 B:225-230,235-244,340-345,347-353,408-419
3fp0 A:434-442,455-470,476-484,485-496,499-518
3h0u B:116-120,130-136,139-143,176-180,273-281
3h0u C:116-120,130-136,139-143,176-180,273-281
3h0u A:116-120,130-136,139-143,176-180,273-281
3mae A:330-337,342-346,353-365,374-386,390-409
3mae C:330-337,342-346,353-365,374-386,390-408
3mae B:330-337,342-346,353-365,374-386,390-408
2deb B:586-591,596-602,609-618,619-628,632-653
2deb A:586-591,596-602,609-618,619-628,632-653
2r0t B:154-161,165-169,179-184,194-201,202-215
2fyo A:586-591,597-602,609-618,619-628,632-653
2ii3 E:334-340,346-350,357-369,379-391,395-413
2ii3 F:334-341,346-350,357-369,379-391,395-413
2ii3 A:334-341,346-350,357-369,379-391,395-413
2ii3 C:334-340,346-350,357-369,379-391,395-413
2ii3 D:334-341,346-350,357-369,379-391,395-413
2ii3 B:334-340,346-350,357-369,379-391,395-413
2fy5 A:536-542,547-552,559-568,569-578,585-607
2ihw C:334-341,346-350,357-369,379-391,395-413
2ihw A:334-341,346-350,357-369,379-391,395-413
2ihw B:334-341,346-350,357-369,379-391,395-413
2ihw E:334-340,346-350,357-369,379-391,395-413
2ihw D:334-341,346-350,357-369,379-391,395-413
2ihw F:334-341,346-350,357-369,379-391,395-413
3h68 A:225-230,265-273,340-345,347-353,408-419
3h68 A:225-230,296-302,340-345,347-353,408-419
3h68 A:225-230,235-242,340-345,347-353,408-419
2gms A:154-161,165-169,179-184,194-201,202-215
2h4t A:586-592,596-602,609-618,619-628,632-653
2h4t B:586-592,596-602,609-618,619-628,632-653
3hvq A:51-56,86-94,161-166,168-174,229-240
3hvq A:51-56,117-123,161-166,168-174,229-240
3hvq A:51-56,58-67,161-166,168-174,229-240
2fy4 A:536-542,547-552,559-568,569-578,585-606
1zpu E:22-36,55-61,62-72,108-117,514-525
1zpu B:22-36,55-61,62-72,108-117,514-525
1zpu C:22-36,55-61,62-72,108-117,514-525
1zpu A:22-36,55-61,62-72,108-117,514-525
1zpu F:22-36,55-61,62-72,108-117,514-525
1zpu D:22-36,55-61,62-72,108-117,514-525
2fw3 A:586-591,596-602,609-618,619-628,632-653
2gmu B:154-161,165-169,179-184,194-201,202-214
2gmu A:154-161,165-169,179-184,194-201,202-215