1. b.116.1 Viral chemokine binding protein m3 Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds 2nyz d2nyzb1 B:211-218,278-286,293-301,361-370,371-379 2nyz d2nyza1 A:211-218,278-286,293-301,361-370,371-379 1mkf d1mkfb_ B:211-218,278-286,293-301,361-370,371-379 2nz1 d2nz1x1 X:211-217,278-286,293-301,361-370,371-378 2nz1 d2nz1a1 A:211-217,278-286,293-301,361-370,371-378 1mkf d1mkfa_ A:211-217,278-286,293-301,361-370,371-378 2nz1 d2nz1b1 B:211-217,278-286,293-301,361-370,371-378 1ml0 d1ml0a_ A:211-217,278-286,293-301,361-370,371-378 2nyz d2nyzb1 B:211-218,243-248,293-301,361-370,371-379 2nyz d2nyza1 A:211-218,243-248,293-301,361-370,371-379 1mkf d1mkfb_ B:211-218,243-248,293-301,361-370,371-379 2nz1 d2nz1a1 A:67-76,82-90,103-114,179-188,192-202 1ml0 d1ml0a_ A:67-76,82-90,103-114,179-188,192-202 2nz1 d2nz1a1 A:211-217,243-248,293-301,361-370,371-378 2nz1 d2nz1x1 X:211-217,243-248,293-301,361-370,371-378 2nz1 d2nz1b1 B:211-217,243-248,293-301,361-370,371-378 1mkf d1mkfa_ A:211-217,243-248,293-301,361-370,371-378 2nyz d2nyza1 A:67-75,82-90,103-114,179-188,192-201 1ml0 d1ml0a_ A:211-217,243-248,293-301,361-370,371-378 1mkf d1mkfa_ A:67-76,82-90,103-114,179-188,192-203 2nyz d2nyzb1 B:67-76,82-90,103-114,179-189,191-203 2nz1 d2nz1x1 X:67-76,82-90,103-114,179-189,191-202 2nz1 d2nz1b1 B:67-76,82-90,103-114,179-189,191-203 1mkf d1mkfb_ B:67-76,82-90,103-114,179-189,191-203 4. b.80.7 beta-Roll superhelix turns are made of two short strands each ! Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns 1om8 d1om8a1 A:386-392,396-401,420-429,432-441,447-454 1o0t d1o0ta1 A:385-392,396-401,420-430,431-441,447-454 1omj d1omja1 A:385-390,396-401,420-430,431-441,447-454 1o0q d1o0qa1 A:386-392,396-401,420-430,431-441,447-454 1om6 d1om6a1 A:386-392,396-401,420-430,431-441,447-454 1g9k d1g9ka1 A:386-392,396-401,420-430,431-441,447-454 1h71 d1h71p1 P:386-390,396-401,420-430,431-441,447-454 1kap d1kapp1 P:389-395,399-404,427-437,438-448,454-461 1srp d1srpa1 A:389-393,399-404,427-437,438-448,454-461 1akl d1akla1 A:389-395,399-404,427-437,438-448,454-461 1sat d1sata1 A:389-393,399-404,427-437,438-448,454-461 1jiw d1jiwp1 P:389-395,399-404,427-437,438-448,454-461 1om7 d1om7a1 A:386-390,396-401,420-430,431-441,447-454 1smp d1smpa1 A:389-395,399-404,427-437,438-448,454-461 1af0 d1af0a1 A:389-393,399-404,427-437,438-448,454-461 1k7i d1k7ia1 A:401-405,411-416,436-446,447-457,463-470 1go8 d1go8p1 P:401-405,411-416,436-446,447-457,463-470 1k7q d1k7qa1 A:401-405,411-416,436-446,447-457,463-470 1go7 d1go7p1 P:401-405,411-416,436-446,447-457,463-470 1k7g d1k7ga1 A:401-405,411-416,436-446,447-457,463-470 1k7q d1k7qa1 A:292-296,299-306,309-318,320-325,331-335 1k7g d1k7ga1 A:292-296,299-306,309-318,320-325,331-335 1go8 d1go8p1 P:292-296,299-306,309-318,320-325,331-335 1k7i d1k7ia1 A:292-296,299-306,309-318,320-325,331-335 1go7 d1go7p1 P:292-296,299-306,309-318,320-325,331-335 1af0 d1af0a1 A:280-284,287-294,297-306,308-313,319-323 1srp d1srpa1 A:280-284,287-294,297-306,308-313,319-323 1sat d1sata1 A:280-284,287-294,297-306,308-313,319-323 1akl d1akla1 A:280-284,287-294,297-306,308-313,319-323 1jiw d1jiwp1 P:280-284,288-294,297-306,308-313,319-323 1smp d1smpa1 A:280-284,287-294,297-306,308-313,319-323 1om7 d1om7a1 A:277-281,284-291,294-303,304-310,316-321 1o0q d1o0qa1 A:277-281,285-291,295-303,304-310,316-321 1om8 d1om8a1 A:277-281,285-291,294-303,304-310,316-321 1h71 d1h71p1 P:277-281,284-291,294-303,304-310,316-321 1om6 d1om6a1 A:277-281,285-291,294-303,304-310,316-321 1omj d1omja1 A:277-281,285-291,294-303,304-310,316-321 1g9k d1g9ka1 A:277-281,284-291,294-303,304-310,316-321 1o0t d1o0ta1 A:277-281,285-291,294-303,304-310,316-321 1kap d1kapp1 P:280-284,288-294,297-306,309-313,319-323 5. b.133.1 Dextranase, N-terminal domain Dextranase, N-terminal domain sandwich; 9 strands in 2 sheets; greek-key 1ogo d1ogox1 X:97-107,108-117,127-132,157-165,191-200 1ogm d1ogmx1 X:97-107,108-117,127-131,157-165,191-200 13. b.1.24 Accessory protein X4 (ORF8, ORF7a) Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1xak d1xaka_ A:-1-10,12-18,23-27,45-53,55-66 14. d.238.1 Hypothetical protein TM0875 Hypothetical protein TM0875 unusual fold; core: beta(2)-loop-beta(2)-alpha-beta; mixed beta-sheet: order 51243; parallel strands 2 and 4 1o22 d1o22a_ A:43-54,62-69,96-100,101-108,109-116 15. b.1.19 Antigen MPT63/MPB63 (immunoprotective extracellular protein) Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1lmi d1lmia_ A:4-8,11-19,67-73,115-122,123-131 1lmi d1lmia_ A:4-8,45-58,67-73,115-122,123-131 16. b.1.11 PapD-like contains PP switch between strands D and C' ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1grw d1grwc_ C:15-21,23-37,40-48,87-96,112-126 1grw d1grwb_ B:15-21,23-37,40-48,87-96,112-126 1m1s d1m1sa_ A:106-110,113-125,128-136,167-179,195-206 1row d1rowb_ B:8-12,15-27,30-38,69-81,97-108 1row d1rowa_ A:8-12,15-27,30-38,69-81,98-108 1qpx d1qpxb1 B:7-12,16-26,30-40,83-94,104-116 2msp d2mspa_ A:15-21,23-37,39-48,87-96,112-126 2msp d2mspc_ C:15-21,23-37,39-48,87-96,112-126 1bf8 d1bf8a1 A:8-13,16-24,29-40,80-92,106-117 2msp d2mspd_ D:15-21,23-37,39-48,87-96,112-126 2msp d2mspf_ F:15-21,23-37,39-48,87-96,112-126 2msp d2mspb_ B:15-21,23-37,39-48,87-96,112-126 2msp d2mspg_ G:15-21,23-37,39-48,87-96,112-126 2os7 d2os7b1 B:19-25,29-38,41-49,92-103,133-144 1grw d1grwa_ A:15-21,23-37,40-48,87-96,115-126 1grw d1grwd_ D:15-21,23-37,40-48,87-96,115-126 1l4i d1l4ia1 A:7-13,17-25,29-40,80-92,105-117 1l4i d1l4ib1 B:7-13,16-26,30-40,80-92,106-117 1msp d1mspa_ A:15-21,23-37,39-48,87-96,115-126 1msp d1mspb_ B:15-21,25-37,40-48,87-96,115-126 2os7 d2os7a1 A:20-25,29-37,40-50,92-103,134-144 3dpa d3dpaa1 A:7-14,16-26,30-40,83-94,106-118 1qpx d1qpxa1 A:7-14,16-25,29-40,83-95,105-118 2msp d2msph_ H:15-21,23-37,39-48,87-96,115-126 1qpp d1qppb1 B:7-14,16-25,29-40,83-95,105-118 3bwu d3bwuc1 C:8-13,16-26,30-40,80-92,101-117 2msp d2mspe_ E:15-21,23-37,39-48,87-96,115-126 1n0l d1n0la1 A:8-14,16-26,30-40,83-95,100-118 1n0l d1n0lc1 C:8-14,16-26,30-40,83-95,100-118 2j7l d2j7la1 A:7-14,16-25,29-40,83-95,107-118 2j2z d2j2za1 A:8-14,16-26,30-40,83-95,100-118 1qpp d1qppa1 A:7-14,16-26,30-40,83-95,106-118 1ze3 d1ze3c1 C:8-13,17-25,29-40,79-92,101-117 1pdk d1pdka1 A:8-14,16-26,30-40,83-94,100-118 2os7 d2os7f1 F:19-25,29-38,41-49,92-103,127-144 2uy6 d2uy6a1 A:8-14,16-26,30-40,83-94,100-118 2uy7 d2uy7e1 E:8-14,16-26,30-40,83-94,100-118 2uy7 d2uy7a1 A:8-14,16-26,30-40,83-94,100-118 2uy7 d2uy7g1 G:8-14,16-26,30-40,83-94,100-118 1kiu d1kiug1 G:8-13,17-26,29-40,79-92,100-117 1kiu d1kiuc1 C:8-13,17-26,29-40,79-92,100-117 1kiu d1kiue1 E:8-13,17-26,29-40,79-92,100-117 1kiu d1kiua1 A:8-13,17-26,29-40,79-92,100-117 2co7 d2co7b1 B:20-26,29-38,41-51,90-101,115-133 2uy7 d2uy7c1 C:8-14,16-26,30-40,83-94,100-118 1qun d1quna1 A:8-13,16-26,29-40,79-92,100-117 1qun d1qung1 G:8-13,16-26,29-40,79-92,100-117 1qun d1qunc1 C:8-13,16-26,29-40,79-92,100-117 1qun d1qune1 E:8-13,16-26,29-40,79-92,100-117 1qun d1quni1 I:8-13,17-25,28-40,80-92,101-117 1qun d1qunm1 M:8-13,17-25,28-40,80-92,101-117 2os7 d2os7d1 D:19-25,29-38,41-49,92-103,126-144 1qun d1qunk1 K:8-13,17-25,28-40,80-92,101-117 1qun d1quno1 O:8-13,17-25,28-40,80-92,101-117 1klf d1klfm1 M:8-13,16-25,29-40,79-91,101-117 1klf d1klfk1 K:8-13,16-25,29-40,79-91,101-117 1klf d1klfo1 O:8-13,16-25,29-40,79-91,101-117 1klf d1klfi1 I:8-13,16-25,29-40,79-91,101-117 1klf d1klfa1 A:8-13,16-26,29-40,79-91,101-117 1klf d1klfe1 E:8-13,16-26,29-40,79-91,101-117 1klf d1klfg1 G:8-13,16-26,29-40,79-91,101-117 1klf d1klfc1 C:8-13,16-26,29-40,79-91,101-117 2os7 d2os7c1 C:20-25,29-37,40-50,92-103,126-144 2os7 d2os7e1 E:20-25,29-37,40-50,92-103,126-144 1kiu d1kium1 M:8-13,16-20,27-40,79-91,100-117 1kiu d1kiuo1 O:8-13,16-20,27-40,79-91,100-117 1kiu d1kiui1 I:8-13,16-20,27-40,79-91,100-117 1kiu d1kiuk1 K:8-13,16-20,27-40,79-91,100-117 17. b.1.6 Cadherin-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1op4 d1op4a_ A:40-44,51-58,69-75,99-110,111-122 1ff5 d1ff5b2 B:111-118,125-130,145-155,185-196,199-212 1l3w d1l3wa3 A:224-231,235-243,256-262,294-305,315-324 1suh d1suha_ A:5-10,18-24,33-40,72-83,89-99 1ncj d1ncja2 A:111-119,123-130,144-154,184-195,202-215 1q1p d1q1pa2 A:111-119,125-130,145-154,185-196,199-213 1nch d1nchb_ B:6-10,17-24,33-40,72-83,91-99 1l3w d1l3wa2 A:112-119,123-130,145-154,185-196,199-213 2qvi d2qvia2 A:111-119,123-130,144-154,184-195,202-215 1ff5 d1ff5a2 A:111-119,125-130,145-155,185-196,199-213 1edh d1edhb2 B:111-119,123-130,145-154,185-196,199-213 1edh d1edha2 A:111-119,124-130,145-155,185-196,199-213 1l3w d1l3wa4 A:335-342,347-354,365-374,405-416,419-431 1edh d1edha1 A:6-11,17-24,33-40,72-83,91-100 1ff5 d1ff5a1 A:6-11,17-24,33-40,72-83,91-100 1ff5 d1ff5b1 B:6-11,17-24,33-40,72-83,91-100 1edh d1edhb1 B:6-11,17-24,33-40,72-83,91-100 2omy d2omyb1 B:7-11,17-24,33-41,72-83,91-100 21. d.177.1 FAH FAH unusual fold; contains 3 layers of beta-sheet structure 1i7o d1i7oc1 C:43-48,49-55,60-72,86-97,113-123 1i7o d1i7od1 D:43-47,48-55,60-72,86-97,113-123 1gtt d1gttc1 C:43-48,49-55,60-72,86-97,113-123 1gtt d1gttd1 D:43-47,48-55,60-72,86-97,113-123 1gtt d1gttb1 B:43-48,49-55,60-72,86-97,113-123 1i7o d1i7ob1 B:43-48,49-55,60-72,86-97,113-123 1i7o d1i7oa1 A:43-47,48-55,60-72,86-97,113-123 1gtt d1gtta1 A:43-47,48-55,60-72,86-97,113-123 1sv6 d1sv6e_ E:86-90,91-95,101-114,130-142,160-167 1qco d1qcob2 B:669-675,696-706,796-806,887-899,900-914 1hyo d1hyob2 B:669-675,696-708,796-806,887-899,900-914 1qqj d1qqja2 A:169-175,196-208,296-306,387-399,400-414 1qcn d1qcnb2 B:669-675,696-708,796-806,887-899,900-914 1qqj d1qqjb2 B:169-175,196-208,296-306,386-399,400-414 2hzy d2hzyb2 B:169-175,196-208,296-306,387-399,400-414 1qco d1qcoa2 A:169-175,196-206,296-306,387-399,400-414 1sv6 d1sv6d_ D:90-95,160-167,179-188,241-250,253-261 1sv6 d1sv6b_ B:90-95,160-167,179-188,241-250,253-261 1sv6 d1sv6a_ A:90-95,160-167,179-188,241-250,253-261 1sv6 d1sv6c_ C:90-95,160-167,179-188,241-250,253-261 1qqj d1qqja2 A:169-175,256-260,296-306,387-399,400-414 1hyo d1hyob2 B:669-675,756-760,796-806,887-899,900-914 1qcn d1qcna2 A:169-175,196-208,296-306,387-399,400-414 1qcn d1qcnb2 B:669-675,756-760,796-806,887-899,900-914 2hzy d2hzya2 A:169-175,196-208,296-306,387-399,400-414 1gtt d1gttd1 D:48-55,113-123,129-137,185-193,198-206 1i7o d1i7oc2 C:260-266,272-284,348-356,404-413,415-424 1qqj d1qqjb2 B:169-175,256-260,296-306,386-399,400-414 1i7o d1i7od1 D:48-55,113-123,129-137,185-193,198-206 1hyo d1hyoa2 A:169-175,196-208,296-306,387-399,400-414 1i7o d1i7oa1 A:48-55,113-123,129-137,185-193,198-206 2hzy d2hzyb2 B:169-175,256-260,296-306,387-399,400-414 1gtt d1gtta1 A:48-55,113-123,129-137,185-193,198-206 1qcn d1qcna2 A:169-175,256-260,296-306,387-399,400-414 1qco d1qcob2 B:669-675,756-760,796-806,887-899,900-914 1i7o d1i7ob1 B:49-55,113-123,129-137,185-193,198-206 1sv6 d1sv6d_ D:90-95,101-114,179-188,241-250,253-261 1gtt d1gttb1 B:49-55,113-123,129-137,185-193,198-206 2hzy d2hzya2 A:169-175,256-260,296-306,387-399,400-414 1sv6 d1sv6e_ E:91-95,160-167,179-188,241-250,253-261 1sv6 d1sv6b_ B:90-95,101-114,179-188,241-250,253-261 1gtt d1gttc2 C:260-266,272-284,348-356,404-413,415-424 1sv6 d1sv6a_ A:90-95,101-114,179-188,241-250,253-261 1hyo d1hyoa2 A:169-175,256-260,296-306,387-399,400-414 1sv6 d1sv6c_ C:90-95,101-114,179-188,241-250,253-261 1i7o d1i7oc1 C:49-55,113-123,129-137,185-193,198-206 1gtt d1gttc1 C:49-55,113-123,129-137,185-193,198-206 1qco d1qcoa2 A:169-175,256-260,296-306,387-399,400-414 1i7o d1i7oc2 C:260-266,330-334,348-356,404-413,415-424 1gtt d1gttd2 D:260-266,272-284,348-356,404-413,416-424 1i7o d1i7od2 D:260-266,272-284,348-356,404-413,416-424 1sv6 d1sv6e_ E:91-95,101-114,179-188,241-250,253-261 1i7o d1i7ob2 B:260-266,272-285,348-356,404-413,415-424 1gtt d1gtta2 A:260-266,328-334,348-356,404-413,416-424 1i7o d1i7ob2 B:260-266,330-334,348-356,404-413,415-424 1gtt d1gttc2 C:260-266,330-334,348-356,404-413,415-424 1gtt d1gttb2 B:260-266,272-285,348-356,404-413,415-424 1gtt d1gttd1 D:48-55,60-72,129-137,185-193,198-206 1gtt d1gttb2 B:260-266,330-334,348-356,404-413,415-424 1i7o d1i7od1 D:48-55,60-72,129-137,185-193,198-206 1i7o d1i7oa1 A:48-55,60-72,129-137,185-193,198-206 1gtt d1gtta1 A:48-55,60-72,129-137,185-193,198-206 1i7o d1i7ob1 B:49-55,60-72,129-137,185-193,198-206 1gtt d1gttb1 B:49-55,60-72,129-137,185-193,198-206 1i7o d1i7oc1 C:49-55,60-72,129-137,185-193,198-206 1gtt d1gttc1 C:49-55,60-72,129-137,185-193,198-206 1gtt d1gttd2 D:260-266,330-334,348-356,404-413,416-424 1i7o d1i7od2 D:260-266,330-334,348-356,404-413,416-424 1gtt d1gtta2 A:260-266,272-285,348-356,404-413,416-424 1i7o d1i7oa2 A:260-266,272-285,348-356,404-413,416-424 1i7o d1i7oa2 A:260-266,330-334,348-356,404-413,416-424 27. b.6.2 Major surface antigen p30, SAG1 SS-crosslinked beta-sandwich of distinct geometry but topologically similar to cupredoxins ! Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands 1kzq d1kzqb1 B:15-24,28-34,52-56,104-115,120-131 1kzq d1kzqa1 A:15-24,28-34,52-56,104-115,120-131 1ynt d1yntg1 G:3015-3024,3028-3034,3052-3056,3104-3115,3120-3131 1ynt d1yntf1 F:2015-2024,2028-2034,2052-2056,2104-2115,2120-2131 1ynt d1yntf2 F:2146-2156,2161-2167,2180-2184,2230-2241,2243-2254 1ynt d1yntg2 G:3146-3156,3161-3167,3180-3184,3230-3241,3243-3254 1kzq d1kzqb2 B:146-156,161-167,179-184,229-241,243-255 1kzq d1kzqa2 A:146-156,161-167,179-184,229-241,243-255 29. b.1.27 CalX-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 2dpk d2dpka1 A:379-385,388-399,401-415,452-466,490-498 2fwu d2fwua1 A:510-517,519-528,533-544,584-597,641-649 2fws d2fwsa1 A:379-385,388-398,402-413,454-467,491-498 31. b.1.15 Integrin domains Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1jv2 d1jv2a3 A:751-755,774-785,791-804,916-930,940-953 1m1x d1m1xa3 A:751-755,774-786,791-804,916-931,940-953 1m1x d1m1xb1 B:84-93,94-107,353-361,412-419,424-432 1l5g d1l5gb1 B:84-93,94-107,353-361,411-419,424-432 1l5g d1l5ga3 A:751-756,774-786,791-804,916-931,940-954 1u8c d1u8cb1 B:1084-1093,1094-1108,1353-1361,1412-1419,1424-1432 1jv2 d1jv2b1 B:85-93,94-107,353-361,411-419,424-432 1tye d1tyeb1 B:86-93,94-106,352-361,410-419,424-432 1tye d1tyef1 F:86-94,96-107,352-361,410-419,424-433 1tye d1tyed1 D:86-93,94-107,352-361,410-419,424-432 32. b.2.7 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor duplication: one domain of this fold is inserted into another domain of the same fold ! Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold 1h6e d1h6ea_ A:171-187,299-311,316-326,384-394,418-435 1i31 d1i31a_ A:171-187,299-313,317-326,385-394,418-435 1bxx d1bxxa_ A:171-187,299-313,317-326,385-394,418-435 1bw8 d1bw8a_ A:171-187,299-313,317-326,385-394,418-435 2bp5 d2bp5m1 M:171-187,299-313,317-326,385-394,418-435 2pr9 d2pr9a1 A:171-187,299-313,317-326,385-394,418-435 1hes d1hesa_ A:171-187,299-313,317-326,385-394,418-435