1. d.110.2 GAF domain-like alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654 !
Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
1f5m d1f5ma_ A:20-40,41-61,130-140,142-153,159-177
1f5m d1f5mb_ B:20-40,41-61,130-140,142-153,159-178
1vhm d1vhma_ A:20-37,41-58,123-133,134-145,151-172
1vhm d1vhmb_ B:20-37,41-58,123-133,134-145,151-172
2ool d2oola1 A:141-159,161-178,279-289,290-301,307-333
1stz d1stza2 A:102-109,115-132,285-297,298-309,313-336
2o9b d2o9ba1 A:136-150,152-169,270-280,281-292,298-322
2ool d2oolb1 B:143-159,161-178,279-289,290-301,307-332
2o9c d2o9ca1 A:136-150,152-169,270-280,281-292,298-322
1stz d1stza2 A:102-109,115-132,133-139,230-235,313-336
1ztu d1ztua1 A:137-150,152-169,270-280,281-292,298-325
1f5m d1f5ma_ A:20-40,41-61,63-73,78-87,159-177
1f5m d1f5mb_ B:20-40,41-61,63-73,78-87,159-178
3c2w d3c2wh1 H:119-138,139-156,257-267,268-279,285-333
2vea d2veaa1 A:137-147,152-169,270-280,281-292,298-346
3c2w d3c2wd1 D:119-138,139-156,257-267,268-279,285-333
3c2w d3c2wa1 A:119-138,139-156,257-267,268-279,285-333
3c2w d3c2we1 E:119-138,139-156,256-267,268-279,285-333
3c2w d3c2wc2 C:285-333,334-341,409-419,420-429,475-496
3c2w d3c2we2 E:285-333,334-341,409-419,420-429,475-495
3c2w d3c2wc2 C:285-333,334-341,353-360,361-367,475-496
3c2w d3c2wa2 A:285-333,334-341,409-419,420-429,475-494
3c2w d3c2wa2 A:285-333,334-341,353-360,361-367,475-494
3c2w d3c2wd2 D:285-333,334-341,409-419,420-429,475-496
3c2w d3c2wh2 H:285-333,334-341,409-419,420-429,475-496
3c2w d3c2wf2 F:285-333,344-351,409-419,420-429,475-498
3c2w d3c2we2 E:285-333,334-341,353-360,361-367,475-495
3c2w d3c2wd2 D:285-333,334-341,353-360,361-367,475-496
3c2w d3c2wb1 B:122-137,139-156,257-267,268-279,285-333
3c2w d3c2wg2 G:285-333,334-341,409-419,420-429,475-497
3c2w d3c2wf1 F:118-137,139-156,257-267,268-279,285-333
3c2w d3c2wc1 C:118-137,139-156,257-267,268-279,285-333
3c2w d3c2wf2 F:285-333,334-341,409-419,420-429,475-498
3c2w d3c2wg2 G:285-333,334-341,353-360,361-367,475-497
3c2w d3c2wg1 G:118-137,139-156,257-267,268-279,285-333
3c2w d3c2wf2 F:285-333,334-341,353-360,361-367,475-498
3c2w d3c2we1 E:119-138,139-156,158-167,169-179,285-333
2vea d2veaa2 A:298-346,355-364,424-431,435-442,490-517
2vea d2veaa2 A:298-346,347-356,424-431,435-442,490-517
2vea d2veaa2 A:298-346,347-356,366-373,374-381,490-517
2. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1n4o d1n4ob_ B:23-31,32-41,242-253,258-267,271-291
1o7e d1o7ea_ A:23-30,32-41,242-253,257-267,271-291
1n4o d1n4oa_ A:23-30,32-41,242-253,257-267,271-291
1o7e d1o7eb_ B:23-30,32-41,242-253,258-267,271-291
3. d.110.5 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors alpha(2)-beta(2)-alpha(2)-beta(3)-alpha; possibly related to the PAS domain !
Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
1l3l d1l3lc2 C:3-14,17-33,111-121,123-133,144-162
1l3l d1l3ld2 D:3-14,17-33,111-121,123-133,144-162
1l3l d1l3lb2 B:3-15,17-33,111-121,123-133,144-163
1h0m d1h0mc2 C:3-14,17-33,111-121,123-133,144-162
1l3l d1l3la2 A:3-15,17-33,111-121,123-133,144-163
1h0m d1h0md2 D:3-14,17-33,111-121,123-133,144-163
1h0m d1h0mb2 B:3-14,17-33,111-121,123-133,144-163
1h0m d1h0ma2 A:3-14,17-33,111-121,123-133,144-165
1h0m d1h0ma2 A:3-14,17-33,34-44,45-52,144-165
1l3l d1l3lb2 B:3-15,17-33,34-44,45-52,144-163
1l3l d1l3la2 A:3-15,17-33,34-44,45-52,144-163
1h0m d1h0mc2 C:3-14,17-33,34-44,45-52,144-162
1l3l d1l3lc2 C:3-14,17-33,35-44,45-52,144-162
1l3l d1l3ld2 D:3-14,17-33,35-44,45-52,144-162
1h0m d1h0mb2 B:3-14,17-33,34-44,45-52,144-163
1h0m d1h0md2 D:3-14,17-33,34-44,45-52,144-163
4. c.85.1 FucI/AraA N-terminal and middle domains
FucI/AraA N-terminal and middle domains consists of two domains of similar topology, 3 layers (a/b/a) each ! Domain 1 (1-173) has parallel beta-sheet of 5 strands, order 21345 ! Domain 2 (174-355) has parallel beta-sheet of 4 strands, order 2134
1fui d1fuid2 D:152-175,339-354,454-466,527-534,536-548
2ajt d2ajta2 A:153-176,308-323,389-400,449-456,458-470
2hxg d2hxgb2 B:153-176,308-323,389-400,449-456,458-470
2ajt d2ajtc2 C:153-176,308-323,389-400,449-456,458-470
2ajt d2ajtb2 B:153-176,308-323,389-400,449-456,458-470
1fui d1fuif2 F:152-175,339-354,454-467,527-534,536-548
1fui d1fuie2 E:152-175,339-354,454-467,527-534,536-548
1fui d1fuic2 C:152-175,339-354,454-467,527-534,536-548
2hxg d2hxga2 A:153-176,308-323,388-400,449-456,458-470
1fui d1fuib2 B:152-175,339-354,455-467,527-534,536-548
1fui d1fuia2 A:152-175,339-354,454-467,527-534,536-548
2hxg d2hxgc2 C:153-176,308-323,388-400,449-456,458-470
5. d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8-stranded mixed beta-sheet; 2 layers: alpha/beta
1ysz d1ysza1 A:96-123,195-206,205-216,217-227,252-261
2gfd d2gfda1 A:96-123,197-206,205-215,220-227,252-261
1yt2 d1yt2a1 A:96-123,197-206,205-215,220-227,252-261
1yt0 d1yt0a1 A:96-123,197-206,205-215,220-227,252-261
6. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1qmn d1qmna_ A:53-68,127-139,163-172,179-193,298-307
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1116 (enumeration index: query1281) of S5
3lu0 C:205-214,216-226,295-299,331-337,345-355
3cit A:16-41,42-59,61-69,73-81,141-172
3cit B:16-41,42-59,61-68,74-81,141-169
3cit A:16-41,42-59,110-119,125-134,141-172
3cit B:16-41,42-59,110-119,125-134,141-169
2gx5 B:0-16,23-36,37-44,46-53,136-160
2gx5 A:0-16,23-36,37-44,46-53,136-160
2gx5 C:0-16,23-36,37-44,46-53,136-160
2gx5 D:0-16,23-36,37-44,46-53,136-160
2gx5 B:0-16,23-36,109-119,120-131,136-160
2gx5 A:0-16,23-36,109-119,120-131,136-160
2gx5 C:0-16,23-36,109-119,120-131,136-160
2gx5 D:0-16,23-36,109-119,120-131,136-160
3ksf E:8-21,25-42,107-117,118-129,135-154
3ksf G:8-21,25-42,44-54,55-64,135-154
3ksf B:8-21,25-42,44-54,55-64,135-154
3ksf D:8-21,25-42,43-54,55-64,135-154
3ksf H:8-21,25-41,107-117,118-129,135-154
3ksf F:8-21,25-42,107-117,118-129,135-154
3ksf A:8-21,25-42,44-54,55-64,135-154
3ksf C:8-21,25-42,107-117,118-129,135-154
3ksf D:8-21,25-42,107-117,118-129,135-154
3ksf F:8-21,25-42,44-54,55-64,135-154
3ksf B:8-21,25-42,107-117,118-129,135-154
3ksf A:8-21,25-42,107-117,118-129,135-154
3ksf G:8-21,25-42,107-117,118-129,135-154
3ksf H:8-21,25-41,44-54,55-64,135-154
3ix8 A:2-13,15-31,32-42,50-55,147-167
3ix8 D:2-13,15-31,32-42,50-55,147-167
3ix8 A:2-13,15-31,112-121,123-132,147-167
3ix8 C:2-13,15-31,112-121,123-132,147-167
3ix8 C:2-13,15-31,32-42,50-55,147-167
3ix8 D:2-13,15-31,112-121,123-132,147-167
3ix8 B:6-14,15-31,32-42,50-55,147-167
2wi2 B:40-67,136-145,144-154,159-165,191-200
2xjx A:40-67,136-145,144-154,159-165,191-200
3ix3 B:7-14,15-31,32-42,50-55,147-168
3o6q A:97-127,135-155,198-207,208-217,222-241
3o6q C:98-127,135-155,198-207,208-217,222-240
3o2f B:96-123,195-206,205-216,217-227,252-261
2ye8 A:40-67,136-145,144-154,159-165,191-200
3k98 B:40-67,136-145,144-153,159-165,191-200
3qp5 D:17-34,36-52,55-65,71-77,174-187
3qp5 B:17-34,36-52,137-147,148-158,164-175
3qp5 C:17-34,36-52,55-65,71-79,174-187
3qp5 A:17-34,36-52,137-147,148-158,164-175
3qp5 B:17-34,36-52,55-63,73-79,174-187
3qp5 D:17-34,36-52,137-147,148-158,164-175
3qp5 C:17-34,36-52,137-147,148-158,164-175
3qp5 A:17-34,36-52,55-65,71-79,174-187
2q0o B:2-17,19-35,113-123,125-135,146-167
2q0o A:2-17,19-35,113-123,125-135,146-169
2q0o A:2-17,19-35,37-46,47-54,146-169
2q0o B:2-17,19-35,37-46,47-54,146-167
3ci6 A:3-19,21-38,112-122,123-134,140-165
3ci6 B:3-19,21-38,40-50,51-61,140-165
3ci6 A:3-19,21-38,40-50,51-61,140-165
3ci6 B:3-19,21-38,112-122,123-134,140-165
3qp1 A:17-34,36-51,137-147,148-159,164-175
3qp1 A:17-34,36-51,55-65,71-79,174-186
3mf0 B:147-163,164-181,183-194,196-203,296-344
3mf0 B:296-344,346-363,365-373,379-388,485-520
3mf0 A:146-163,164-181,264-274,276-286,296-344
3mf0 A:146-163,164-181,183-194,196-203,296-344
3mf0 A:296-344,346-363,449-458,463-472,485-497
3mf0 A:296-344,346-363,449-458,463-472,496-519
3mf0 A:296-344,346-363,365-373,379-388,485-497
3mf0 A:296-344,346-363,365-373,379-388,496-519
3mf0 B:296-344,346-363,449-458,463-472,485-520
3mf0 B:147-163,164-181,264-274,276-286,296-344
3zq5 A:132-151,152-169,270-280,281-292,298-346
3zq5 A:298-346,355-364,424-431,435-442,490-518
3zq5 A:298-346,347-356,424-431,435-442,490-518
3zq5 A:132-151,152-169,171-180,182-192,298-346
3ksg B:8-21,25-42,44-54,55-64,135-154
3ksg B:8-21,25-42,107-117,118-129,135-154
3ksg A:8-21,25-42,107-117,118-129,135-154
3qp6 A:17-34,36-49,137-145,149-158,164-175
3qp6 A:17-34,36-49,54-65,71-79,174-187
2b18 A:2-21,23-36,108-119,120-132,136-155
3oov A:3-11,13-30,110-120,121-131,139-165
3oov B:-2-11,13-30,110-120,121-131,139-163
3oov A:3-11,13-30,32-40,44-53,139-165
3lfv B:147-163,164-181,183-194,196-203,296-344
3lfv B:296-344,346-363,365-373,379-388,485-520
3lfv A:146-163,164-181,264-274,276-286,296-344
3lfv A:296-344,346-363,449-458,463-472,485-497
3lfv A:296-344,346-363,365-373,379-388,496-520
3lfv B:296-344,346-363,449-458,463-472,485-520
3lfv A:296-344,346-363,449-458,463-472,496-520
3lfv A:146-163,164-181,183-194,196-203,296-344
3lfv B:147-163,164-181,264-274,276-286,296-344
3lfv A:296-344,346-363,365-373,379-388,485-497
3qp2 A:17-34,36-51,137-147,148-159,164-175
3qp2 A:17-34,36-51,55-65,71-79,174-186
2zmf A:246-263,265-283,365-375,376-388,394-422
3nhq H:119-138,139-156,158-167,169-179,285-333
3nhq B:122-137,139-156,257-267,268-279,285-333
3nhq F:118-137,139-156,257-267,268-279,285-333
3nhq B:285-333,334-341,409-419,420-429,475-497
3nhq G:285-333,334-341,353-360,361-367,475-497
3nhq E:285-333,334-341,353-360,361-367,475-495
3nhq C:285-333,334-341,409-419,420-429,475-496
3nhq C:285-333,334-341,353-360,361-367,475-496
3nhq C:118-137,139-156,257-267,268-279,285-333
3nhq G:118-137,139-156,257-267,268-279,285-333
3nhq D:119-138,139-156,257-267,268-279,285-333
3nhq G:285-333,334-341,409-419,420-429,475-497
3nhq H:285-333,334-341,409-419,420-429,475-496
3nhq A:119-138,139-156,257-267,268-279,285-333
3nhq A:285-333,334-341,353-360,361-367,475-494
3nhq D:285-333,334-341,353-360,361-367,475-496
3nhq F:285-333,334-341,409-419,420-429,475-498
3nhq H:119-138,139-156,257-267,268-279,285-333
3nhq H:285-333,334-341,353-360,361-367,475-496
3nhq E:119-138,139-156,257-267,268-279,285-333
3nhq D:285-333,334-341,409-419,420-429,475-496
3nhq A:285-333,334-341,409-419,420-429,475-494
3nhq E:285-333,334-341,409-419,420-429,475-495
3ibr B:119-138,139-156,256-267,268-279,285-333
3ibr B:285-333,334-341,409-416,422-429,475-492
3ibr A:119-138,139-156,257-267,268-279,285-333
3ibr A:285-333,334-341,409-416,422-429,475-492
3a9s B:157-178,344-359,458-470,531-538,539-552
3a9s C:157-178,344-359,458-470,531-538,539-552
3a9s A:157-178,344-359,458-470,531-538,539-552
2uv0 E:6-14,15-31,32-42,50-55,147-168
2uv0 H:2-13,15-31,32-42,50-55,147-168
2uv0 G:2-13,15-31,112-121,123-132,147-167
2uv0 F:5-14,15-31,112-121,123-132,147-168
2uv0 G:2-13,15-31,32-42,50-55,147-167
2uv0 H:2-13,15-31,112-121,123-132,147-168
2uv0 F:5-14,15-31,33-42,50-55,147-168
3qp4 A:17-34,36-52,137-147,148-159,164-175
3qp4 A:17-34,36-52,55-65,71-79,174-186
3dlw A:53-68,127-139,163-172,179-193,300-309
3e0y B:80-89,93-110,181-192,193-205,210-238
3e0y A:80-90,93-110,112-121,122-131,210-238
3e0y B:80-89,93-110,112-121,122-131,210-238
3e0y A:80-90,93-110,180-192,193-205,210-238
3g6o A:119-138,139-156,257-267,268-279,285-333
3g6o B:119-138,139-156,257-267,268-279,285-333
3g6o B:285-333,334-341,409-416,422-429,475-492
3g6o A:285-333,334-342,409-416,422-429,475-492
3jpu A:6-13,15-31,32-42,50-55,147-166
3jpu D:6-13,15-31,32-42,50-55,147-166
3jpu A:6-13,15-31,112-121,123-132,147-166
3jpu C:6-13,15-31,112-121,123-132,147-166
3jpu E:6-13,15-31,33-42,50-55,147-166
3jpu E:6-13,15-31,112-121,123-132,147-166
3jpu B:6-13,15-31,112-121,123-132,147-166
3jpu C:6-13,15-31,32-42,50-55,147-166
3jpu D:6-13,15-31,112-121,123-132,147-166
3jpu B:6-13,15-31,32-42,50-55,147-166
3ibj B:373-407,409-426,500-508,515-524,530-573
3ibj A:223-238,241-258,329-339,340-351,359-374
3ibj A:373-407,409-426,500-508,515-524,530-573
3ibj B:223-238,241-258,329-339,340-351,359-374
3a9r B:157-178,344-359,458-470,531-538,539-552
3a9r C:157-178,344-359,458-470,531-538,539-552
3a9r A:157-178,344-359,458-470,531-538,539-552
3ko6 A:20-40,41-61,130-140,142-153,159-177
3ko6 B:20-40,41-61,63-73,78-87,159-177
3ko6 A:20-40,41-61,63-73,78-87,159-177
3ko6 B:20-40,41-61,130-140,142-153,159-177
3dba A:55-69,74-92,94-105,106-118,206-225
3dba A:55-69,74-92,177-187,188-198,206-225
3dba B:55-70,75-92,177-187,188-198,206-225
1ykd A:231-268,271-288,290-300,301-310,413-434
3k2n B:-2-15,17-34,36-46,47-58,143-174
3k2n A:-2-16,17-34,115-125,126-137,143-155
3k2n A:-2-16,17-34,36-46,47-57,154-174
3k2n B:-2-15,17-34,115-125,126-137,143-174
3a9t B:157-178,344-359,458-470,531-538,539-552
3a9t C:157-178,344-359,458-470,531-538,539-552
3a9t A:157-178,344-359,458-470,531-538,539-552
3qp8 A:17-34,36-50,54-65,71-79,174-187
3qp8 D:17-34,36-52,137-147,148-158,164-175
3qp8 A:17-34,36-50,137-146,149-158,164-175
3qp8 C:17-34,36-50,54-65,71-79,174-187
3qp8 D:17-34,36-52,54-65,71-79,164-175
3qp8 C:17-34,36-50,137-145,149-158,164-175
3qp8 D:17-34,36-52,54-65,71-79,174-187
3qp8 B:17-34,36-49,55-65,71-79,174-187
3qp8 B:17-34,36-49,137-145,149-159,164-175
3p01 B:140-174,175-192,262-272,273-284,290-314
3p01 B:140-174,175-192,194-201,209-215,290-314
3p01 A:137-174,175-192,262-272,273-284,290-313
3p01 C:147-174,175-192,194-201,209-216,290-313
3p01 A:137-174,175-192,194-201,209-215,290-313
3p01 C:147-174,175-192,262-272,273-284,290-313
3e98 A:48-96,98-115,176-185,187-197,204-225
3e98 B:46-96,98-115,176-185,187-197,204-225
3mmh B:10-30,31-48,50-60,61-71,142-167
3mmh A:10-30,31-48,50-60,61-71,142-166
3mmh B:10-30,31-48,114-124,125-136,142-167
3mmh A:10-30,31-48,114-124,125-136,142-166
3szt A:7-16,17-33,111-121,123-133,145-165
3szt B:7-16,17-33,35-46,49-57,145-165
3szt A:7-16,17-33,35-44,50-57,145-165
3ix4 A:7-14,15-31,33-42,50-55,147-168
3ix4 D:3-13,15-31,32-42,50-55,147-168
3ix4 F:3-13,15-31,32-42,50-55,147-168
3ix4 G:1-13,15-31,33-42,50-55,147-168
3ix4 C:1-13,15-31,112-121,123-132,147-168
3ix4 E:4-13,15-31,32-42,50-55,147-168
3ix4 E:4-13,15-31,112-121,123-132,147-168
3ix4 H:1-13,15-31,112-121,123-132,136-167
3ix4 B:3-13,15-31,112-121,123-132,147-168
3ix4 C:1-13,15-31,32-42,50-55,147-168
3ix4 D:3-13,15-31,112-121,123-132,147-168
3ix4 G:1-13,15-31,112-121,123-132,147-168
3ix4 F:3-13,15-31,112-121,123-132,147-168
3ix4 B:3-13,15-31,32-42,50-55,147-168
3ix4 H:1-13,15-31,33-42,50-55,136-167