1. d.59.1 Ribosomal protein L30p/L7e
Ribosomal protein L30p/L7e core: beta-alpha-beta-alpha-beta; antiparallel beta-sheet: order 312; some similarity to the ferredoxin-like fold
1vq9 d1vq9w1 W:1-7,30-36,58-70,92-103,142-154
2otl d2otlw1 W:1-7,30-36,58-70,92-103,142-154
1vqn d1vqnw1 W:1-7,30-36,58-70,92-103,142-154
1vq5 d1vq5w1 W:1-7,30-36,58-70,92-103,142-154
1yj9 d1yj9w1 W:1-7,30-36,58-70,92-103,142-154
1qvg d1qvgv_ V:1-7,30-36,58-70,92-103,142-154
1yhq d1yhqw1 W:1-7,30-36,58-70,92-103,142-154
1vq4 d1vq4w1 W:1-7,30-36,58-70,92-103,142-154
1vqp d1vqpw1 W:1-7,30-36,58-70,92-103,142-154
1n8r d1n8rx_ X:1-7,30-36,58-70,92-103,142-154
1vq6 d1vq6w1 W:1-7,30-36,58-70,92-103,142-154
1q7y d1q7yx_ X:1-7,30-36,58-70,92-103,142-154
1qvf d1qvfv_ V:1-7,30-36,58-70,92-103,142-154
1vqo d1vqow1 W:1-7,30-36,58-70,92-103,142-154
1yjn d1yjnw1 W:1-7,30-36,58-70,92-103,142-154
1vq7 d1vq7w1 W:1-7,30-36,58-70,92-103,142-154
1k73 d1k73x_ X:1-7,30-36,58-70,92-103,142-154
1kc8 d1kc8x_ X:1-7,30-36,58-70,92-103,142-154
1q82 d1q82x_ X:1-7,30-36,58-70,92-103,142-154
1nji d1njix_ X:1-7,30-36,58-70,92-103,142-154
1vq8 d1vq8w1 W:1-7,30-36,58-70,92-103,142-154
1vqk d1vqkw1 W:1-7,30-36,58-70,92-103,142-154
1m1k d1m1kx_ X:1-7,30-36,58-70,92-103,142-154
1vqm d1vqmw1 W:1-7,30-36,58-70,92-103,142-154
1yit d1yitw1 W:1-7,30-36,58-70,92-103,142-154
1kqs d1kqsv_ V:1-7,30-36,58-70,92-103,142-154
1m90 d1m90x_ X:1-7,30-36,58-70,92-103,142-154
1jj2 d1jj2v_ V:1-7,30-36,58-70,92-103,142-154
1q81 d1q81x_ X:1-7,30-36,58-70,92-103,142-154
1yij d1yijw1 W:1-7,30-36,58-70,92-103,142-154
1k8a d1k8ax_ X:1-7,30-36,58-70,92-103,142-154
1yi2 d1yi2w1 W:1-7,30-36,58-70,92-103,142-154
1kd1 d1kd1x_ X:1-7,30-36,58-70,92-103,142-154
1s72 d1s72w_ W:1-7,30-36,58-70,92-103,142-154
1q86 d1q86x_ X:1-7,30-36,58-70,92-103,142-154
1k9m d1k9mx_ X:1-7,30-36,58-70,92-103,142-154
1yjw d1yjww1 W:1-7,30-36,58-70,92-103,142-154
2otj d2otjw1 W:1-7,30-36,58-70,92-103,142-154
1ffk d1ffkt_ T:1-7,30-36,58-70,92-103,142-154
1vql d1vqlw1 W:1-8,30-36,58-70,92-103,142-154
2. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
3ccm d3ccmw1 W:1-7,30-36,58-70,92-103,142-154
3cce d3ccew1 W:1-7,30-36,58-70,92-103,142-154
3cc2 d3cc2w1 W:1-7,30-36,58-70,92-103,142-154
3ccq d3ccqw1 W:1-7,30-36,58-70,92-103,142-154
3cc7 d3cc7w1 W:1-7,30-36,58-70,92-103,142-154
3cma d3cmaw1 W:1-7,30-36,58-70,92-103,142-154
3cd6 d3cd6w1 W:1-7,30-36,58-70,92-103,142-154
1w2b d1w2bv_ V:1-7,30-36,58-70,92-103,142-154
2qex d2qexw1 W:1-7,30-36,58-70,92-103,142-154
3cpw d3cpwv1 V:1-7,30-36,58-70,92-103,142-154
3ccv d3ccvw1 W:1-7,30-36,58-70,92-103,142-154
3ccs d3ccsw1 W:1-7,30-36,58-70,92-103,142-154
3ccl d3cclw1 W:1-7,30-36,58-70,92-103,142-154
2qa4 d2qa4w1 W:1-7,30-36,58-70,92-103,142-154
3ccj d3ccjw1 W:1-7,30-36,58-70,92-103,142-154
3cc4 d3cc4w1 W:1-8,30-36,58-70,92-103,142-154
3cme d3cmew1 W:1-8,30-36,58-70,92-103,142-154
3ccu d3ccuw1 W:1-8,30-36,58-70,92-103,142-154
3ccr d3ccrw1 W:1-8,30-36,58-70,92-103,142-154
1s1i d1s1if_ F:82-88,111-117,139-151,178-190,231-242
3. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
1ynn d1ynnc1 C:171-178,180-187,203-212,216-225,300-316
1i6v d1i6vc_ C:168-177,181-187,203-213,216-225,302-316
2e2h d2e2hb1 B:251-260,267-273,293-303,314-325,370-391
2yu9 d2yu9b1 B:252-260,267-273,293-303,307-322,370-391
4. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
2p5g d2p5gb1 B:133-142,143-152,163-170,179-186,316-339
1q9y d1q9ya1 A:136-145,146-154,166-173,182-189,319-342
1kcf d1kcfb2 B:50-61,63-75,190-202,208-218,224-249
1kcf d1kcfa2 A:50-61,63-75,190-202,208-219,223-249
5. i.8.1 RNA polymerase
RNA polymerase
1hqm d1hqmc_ C:171-177,181-187,203-213,216-225,302-316
6. c.95.1 Thiolase-like
Thiolase-like consists of two similar domains related by pseudo dyad; duplication ! 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32451; strand 5 is antiparallel to the rest
1xpk d1xpkc2 C:3-12,153-164,252-272,276-293,327-338
1xpk d1xpkb2 B:3-12,153-164,252-272,276-293,327-338
1xpk d1xpka2 A:3-12,153-164,252-272,276-293,327-338
1xpk d1xpkd2 D:3-12,153-164,252-272,276-293,327-338
1tvz d1tvza2 A:3-12,153-164,252-272,276-293,327-338
1txt d1txtb2 B:3-12,153-164,252-272,276-293,327-338
1txt d1txtd2 D:3-12,153-164,252-272,276-293,327-338
1txt d1txta2 A:3-12,153-164,252-272,276-293,327-338
1xpl d1xplc2 C:3-12,153-164,252-272,276-293,327-338
1xpm d1xpmc2 C:3-12,153-164,252-272,276-293,327-338
1xpm d1xpmb2 B:3-12,153-164,252-272,276-293,327-338
1xpl d1xplb2 B:3-12,153-164,252-272,276-293,327-338
1xpm d1xpma2 A:3-12,153-164,252-272,276-293,327-338
1xpl d1xpla2 A:3-12,153-164,252-272,276-293,327-338
1xpl d1xpld2 D:3-12,153-164,252-272,276-293,327-338
1xpm d1xpmd2 D:3-12,153-164,252-272,276-293,327-338
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 673 (enumeration index: query1289) of S5
3aoi H:171-177,181-187,203-213,215-225,300-316
3aoi C:171-177,181-187,203-213,215-225,300-316
2ka7 A:1-8,10-17,25-33,83-91,113-124
3i56 W:1-8,30-36,58-70,92-103,142-154
3izr E:84-92,114-121,142-154,182-193,232-244
2fa3 A:4-14,160-172,314-325,327-344,387-395
3tag B:134-142,143-152,163-170,179-186,316-339
3izs E:82-89,112-119,140-152,180-191,232-244
3po3 B:251-260,267-273,293-303,307-322,370-391
3g6e W:1-7,30-36,58-70,92-103,142-154
3i55 W:1-7,30-36,58-70,92-103,142-154
3tae B:133-142,143-152,163-170,179-186,316-339
2o8c B:553-562,567-576,629-641,656-664,674-695
3leh A:2-13,153-165,253-275,277-293,331-339
4a1e V:79-86,109-116,137-149,177-188,227-239
3g4s W:1-7,30-36,58-70,92-103,142-154
3g71 W:1-7,30-36,58-70,92-103,142-154
2o8f B:553-562,567-576,629-641,656-664,674-695
4a17 V:79-86,109-116,137-149,177-188,227-239
3h0g N:238-245,253-260,279-289,293-308,356-377
3h0g B:238-245,253-260,279-289,293-308,356-377
4a1c V:79-86,109-116,137-149,177-188,227-239
3cxc V:1-7,30-36,58-70,92-103,142-154
3lti A:183-190,192-199,216-225,345-355,422-430
2wya B:53-63,209-221,368-379,381-398,433-452
2wya C:53-63,209-221,368-379,381-398,433-452
2wya D:53-63,209-221,368-379,381-398,433-452
2wya A:53-63,209-221,368-379,381-398,433-452
2o8b B:553-562,567-576,629-641,656-664,674-695
2p8u A:16-26,172-184,331-342,344-360,396-416
2p8u B:16-26,172-184,331-342,344-360,396-416
4a1a V:79-86,109-116,137-149,177-188,227-239
3g5b A:617-624,668-675,879-888,892-900,901-918
2o8e B:553-563,566-576,629-641,656-664,674-695
3o5h G:81-90,111-119,140-153,180-191,232-244
2o8d B:553-562,567-576,629-641,656-664,674-695
2zkr W:111-117,140-146,168-180,208-219,258-270