| SCOP superfamily ID |
superfamiily description |
corresponding fold description |
| c.65.1 | Formyltransferase | Formyltransferase 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest |
| c.2.1 | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar |
| c.87.1 | UDP-Glycosyltransferase/glycogen phosphorylase | UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456 |
| c.111.1 | Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds ! | Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest |
| c.34.1 | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456 |
| c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain binds NADP differently than classical Rossmann-fold ! N-terminal FAD-linked domain contains (6,10) barrel ! | Ferredoxin reductase-like, C-terminal NADP-linked domain 3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145 |
| c.82.1 | ALDH-like binds NAD differently from other NAD(P)-dependent oxidoreductases ! | ALDH-like consists of two similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 |
| c.70.1 | Nucleoside hydrolase | Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest |
| c.3.1 | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander |
| c.24.1 | Methylglyoxal synthase-like contains a common phosphate-binding site ! | Methylglyoxal synthase-like 3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145 |
| c.124.1 | NagB/RpiA/CoA transferase-like | NagB/RpiA/CoA transferase-like core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456 |
| c.66.1 | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest |
| c.114.1 | DsrEFH-like | DsrEFH-like 3 layers: a/b/a, core: parallel beta-sheet of 5 strands, order 43215 |
| c.129.1 | MCP/YpsA-like | MCP/YpsA-like 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 4321567 |
| c.92.2 | "Helical backbone" metal receptor contains a long alpha helical insertion in the interdomain linker ! | Chelatase-like duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134 |
| c.26.2 | Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group ! | Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145 |
| c.49.1 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest |
| c.104.1 | YjeF N-terminal domain-like possible circular permutation of the ribokinase-like fold (of the YjeF C-terminal domain) ! | YjeF N-terminal domain-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 32145678; strand 8 is antiparallel to the rest |
| c.32.1 | Tubulin nucleotide-binding domain-like | Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456 |
| c.79.1 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 |
| c.72.1 | Ribokinase-like has extra strand located between strands 2 and 3 ! | Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites |
| e.26.1 | Prismane protein-like | Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology |
| c.68.1 | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest |
| c.1.28 | Radical SAM enzymes common Fe-S cluster and SAM binding sites are embedded into complete or incomplete beta/alpha-barrel ! | TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites |
| c.4.1 | Nucleotide-binding domain this superfamily shares the common nucleotide-binding site with and provides a link between the Rossmann-fold NAD(P)-binding and FAD/NAD(P)-binding domains ! | Nucleotide-binding domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like |
| c.26.1 | Nucleotidylyl transferase | Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145 |
| c.19.1 | FabD/lysophospholipase-like | FabD/lysophospholipase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 432156; strand 4 is antiparallel to the rest |
| c.86.1 | Phosphoglycerate kinase | Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456 |
| c.83.1 | Aconitase iron-sulfur domain | Aconitase iron-sulfur domain consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 |
| e.50.1 | AF1104-like | AF1104-like 2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest] |
| c.115.1 | Hypothetical protein MTH777 (MT0777) | Hypothetical protein MTH777 (MT0777) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456 |
| c.143.1 | CofD-like | CofD-like 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567; topological similarity to the CobT-like fold (scop_cf 52732) |
| c.113.1 | HemD-like | HemD-like duplication: consists of two similar 'swapped' domain with 3 layers (a/b/a) each; parallel beta-sheet of 5 strands, order 21345 |
| c.135.1 | NIF3 (NGG1p interacting factor 3)-like di-iron binding protein ! | NIF3 (NGG1p interacting factor 3)-like consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest |
| c.40.1 | Methylesterase CheB, C-terminal domain | Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567 |
| c.134.1 | LmbE-like | LmbE-like 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest; topological similarity to SAM-dependent methyltransferases |
| e.51.1 | Urocanase | Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet |
| c.27.1 | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like |
| c.123.1 | CoA-transferase family III (CaiB/BaiF) | CoA-transferase family III (CaiB/BaiF) consist of two different alpha/beta domains; N-terminal domain has a SurE-like topology with a left-handed beta-alpha-beta unit |
| c.105.1 | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 45321678, strands 4 and 5 are antiparallel to the rest |
| c.140.1 | TTHA0583/YokD-like | TTHA0583/YokD-like 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 78612354; strands 3, 4 and 8 are antiparallel to the rest |
| c.73.1 | Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! | Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest |
| c.1.3 | Thiamin phosphate synthase | TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites |
| c.142.1 | Nqo1 FMN-binding domain-like | Nqo1 FMN-binding domain-like 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 |
| c.1.14 | RuBisCo, C-terminal domain | TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites |