1. c.2.1 NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
2gyy d2gyya1 A:3-9,12-25,30-36,43-48,66-71
2gz3 d2gz3c1 C:3-9,12-25,30-36,41-48,66-71
2gz3 d2gz3d1 D:3-9,12-25,30-36,41-48,66-71
2hjs d2hjsa1 A:5-11,14-28,32-38,43-50,68-73
2gz1 d2gz1b1 B:3-9,12-25,30-36,41-48,66-71
2gz3 d2gz3a1 A:3-9,12-25,30-36,41-48,66-71
2gyy d2gyyd1 D:3-9,12-25,30-35,42-48,66-71
1iul d1iula_ A:14-20,27-40,41-47,51-56,72-77
1xcb d1xcbg2 G:80-87,89-98,104-112,118-123,142-147
1xcb d1xcbb2 B:80-87,89-98,104-112,118-123,142-147
2vyn d2vync1 C:1-7,9-23,25-32,62-66,89-94
2vyv d2vyvc1 C:1-7,9-23,25-32,62-66,89-94
1xcb d1xcbd2 D:80-87,89-98,104-112,118-123,142-147
1xcb d1xcba2 A:80-87,89-98,104-112,118-123,142-147
1xcb d1xcbf2 F:80-87,89-98,104-112,118-123,142-147
1iuk d1iuka_ A:14-20,27-40,41-47,51-56,72-77
2dt5 d2dt5a2 A:80-87,89-98,104-112,118-123,142-147
1gl3 d1gl3b1 B:2-8,11-25,30-35,42-48,67-72
2dt5 d2dt5b2 B:80-87,89-98,104-112,118-123,142-147
1drv d1drva1 A:5-12,15-29,30-38,46-51,74-80
2gyy d2gyyc1 C:3-9,12-25,30-35,42-47,66-71
2. c.32.1 Tubulin nucleotide-binding domain-like
Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
1rq2 d1rq2b1 B:10-17,17-31,35-43,45-49,94-100
1rq7 d1rq7b1 B:10-17,17-31,35-43,45-49,94-100
2q1y d2q1yb1 B:10-17,17-31,35-43,45-49,94-100
1rlu d1rlub1 B:10-17,17-31,35-43,45-49,94-100
2q1x d2q1xb1 B:10-17,17-31,35-43,45-49,94-100
3. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1g2i d1g2ic_ C:401-407,412-427,428-434,445-450,463-471
1g2i d1g2ib_ B:201-207,212-227,228-234,245-250,263-271
1g2i d1g2ia_ A:1-7,12-27,28-35,45-50,63-71
1gg9 d1gg9b1 B:599-607,612-627,627-634,645-650,663-669
1ggh d1gghb1 B:599-607,612-627,627-634,645-650,663-669
1gge d1ggeb1 B:599-607,612-627,627-634,645-650,663-669
1gg9 d1gg9d1 D:599-607,612-627,627-634,645-650,663-669
1p81 d1p81b1 B:599-607,612-627,627-634,645-650,663-669
1ggh d1gghd1 D:599-607,612-627,627-634,645-650,663-669
1p80 d1p80b1 B:599-607,612-627,627-634,645-650,663-669
1ggj d1ggjb1 B:599-607,612-627,627-634,645-650,663-669
1qws d1qwsb1 B:599-607,612-627,627-634,645-650,663-669
1ggj d1ggjd1 D:599-607,612-627,627-634,645-650,663-669
1p7y d1p7yd1 D:599-607,612-627,627-634,645-650,663-669
1cf9 d1cf9b1 B:599-607,612-627,627-634,645-650,663-669
1cf9 d1cf9c1 C:599-607,612-627,627-634,645-650,663-669
1cf9 d1cf9d1 D:599-607,612-627,627-634,645-650,663-669
1qws d1qwsd1 D:599-607,612-627,627-634,645-650,663-669
1ggf d1ggfd1 D:599-607,612-627,627-634,645-650,663-669
1p81 d1p81d1 D:599-607,612-627,627-634,645-650,663-669
1cf9 d1cf9a1 A:599-607,612-627,627-634,645-650,663-669
1ggk d1ggkc1 C:599-607,612-627,627-634,645-650,663-669
1p7y d1p7ya1 A:599-607,612-627,627-634,645-650,663-669
1qf7 d1qf7a1 A:599-607,612-627,627-634,645-650,663-669
1iph d1iphd1 D:599-607,612-627,627-634,645-650,663-669
1iph d1ipha1 A:599-607,612-627,627-634,645-650,663-669
1iph d1iphc1 C:599-607,612-627,627-634,645-650,663-669
1iph d1iphb1 B:599-607,612-627,627-634,645-650,663-669
1ggk d1ggkd1 D:599-607,612-627,627-634,645-650,663-669
2ab0 d2ab0b1 B:3-10,14-29,30-37,50-55,68-75
3bwe d3bwec1 C:404-411,415-430,431-438,449-453,468-474
2ab0 d2ab0a1 A:3-10,14-29,30-37,50-55,68-75
1p7z d1p7zb1 B:599-607,613-627,627-634,645-650,663-669
3bwe d3bwef1 F:1004-1011,1015-1030,1031-1038,1049-1053,1068-1074
1gge d1ggec1 C:599-607,613-627,627-634,645-650,663-669
1p7z d1p7zd1 D:599-607,613-627,627-634,645-650,663-669
1p81 d1p81c1 C:599-607,613-627,627-634,645-650,663-669
1p80 d1p80c1 C:599-607,613-627,627-634,645-650,663-669
1gg9 d1gg9c1 C:599-607,613-627,627-634,645-650,663-669
1p7z d1p7zc1 C:599-607,613-627,627-634,645-650,663-669
1ggj d1ggjc1 C:599-607,613-627,627-634,645-650,663-669
1p80 d1p80d1 D:599-607,613-627,627-634,645-650,663-669
1gge d1gged1 D:599-607,613-627,627-634,645-650,663-669
1p7y d1p7yc1 C:599-607,613-627,627-634,645-650,663-669
1pdw d1pdwe_ E:2004-2011,2015-2030,2031-2038,2049-2053,2068-2075
1ggh d1gghc1 C:599-607,613-627,627-634,645-650,663-669
1qf7 d1qf7d1 D:599-607,613-627,627-634,645-650,663-669
3bwe d3bwed1 D:604-611,615-630,631-638,649-653,668-675
3bwe d3bwea1 A:4-11,15-30,31-38,49-53,68-75
1qf7 d1qf7c1 C:599-607,613-627,627-634,645-650,663-669
1pdw d1pdwg_ G:3004-3011,3015-3030,3031-3038,3049-3053,3068-3075
1qf7 d1qf7b1 B:599-607,613-627,627-634,645-650,663-669
1pdw d1pdwf_ F:2204-2211,2215-2230,2231-2238,2249-2253,2268-2275
1pe0 d1pe0b_ B:204-211,215-230,231-238,249-253,268-275
1ggf d1ggfc1 C:599-607,613-627,627-634,645-650,663-669
1ggf d1ggfb1 B:599-607,613-627,627-635,645-650,663-669
1pdw d1pdwa_ A:4-11,15-30,31-38,49-53,68-75
1pdw d1pdwd_ D:1204-1211,1215-1230,1231-1238,1249-1253,1268-1275
1pdv d1pdva_ A:4-11,15-30,31-38,49-53,68-75
1qws d1qwsc1 C:599-607,613-627,627-634,645-650,663-669
1pe0 d1pe0a_ A:4-11,15-30,31-38,49-53,68-75
1j42 d1j42a_ A:4-11,15-30,31-38,49-53,68-75
1pdw d1pdwc_ C:1004-1011,1015-1030,1031-1038,1049-1053,1068-1075
3bwe d3bwee1 E:804-811,815-830,831-838,849-853,868-875
2or3 d2or3a1 A:4-11,15-30,31-38,49-53,68-75
3bwe d3bweb1 B:204-211,215-230,231-238,249-253,268-275
1pdw d1pdwh_ H:3204-3211,3215-3230,3231-3238,3249-3253,3268-3275
2or3 d2or3b1 B:4-11,15-30,31-38,49-53,68-75
1ucf d1ucfb_ B:4-11,15-30,31-38,49-53,68-75
1ucf d1ucfa_ A:4-11,15-30,31-38,49-53,68-75
1p5f d1p5fa_ A:4-11,15-30,31-38,49-53,68-75
2r1u d2r1ua1 A:4-11,15-30,31-38,49-53,68-75
2r1u d2r1ub1 B:4-11,15-30,31-38,49-53,68-75
1q2u d1q2ua_ A:4-11,15-30,31-38,49-53,68-75
1pdw d1pdwb_ B:204-211,215-230,231-238,249-253,268-275
1soa d1soaa_ A:4-11,15-30,31-38,49-53,68-75
1p7y d1p7yb1 B:599-607,613-627,627-635,645-650,663-669
1sy7 d1sy7a1 A:554-563,567-582,582-590,600-605,618-625
1sy7 d1sy7b1 B:554-563,567-582,582-590,600-605,618-625
4. c.42.1 Arginase/deacetylase
Arginase/deacetylase 3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
1t64 d1t64a_ A:171-178,182-191,194-202,218-222,258-266
1t64 d1t64b_ B:171-178,182-191,194-202,218-222,258-266
5. c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase
UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456
1sxp d1sxpa_ A:2-8,17-34,36-40,42-46,60-66
1qkj d1qkja_ A:2-8,17-34,36-40,42-46,60-66
1jg6 d1jg6a_ A:2-8,17-34,36-40,42-46,60-66
1jg7 d1jg7a_ A:2-8,17-34,36-40,42-46,60-66
1nzd d1nzda_ A:2-8,17-34,36-40,42-46,60-66
1sxq d1sxqb_ B:2-8,17-34,36-40,42-46,60-66
1jiv d1jiva_ A:2-8,17-34,36-40,42-46,60-66
1ixy d1ixyb_ B:2-8,17-34,36-40,42-46,60-66
1nzf d1nzfa_ A:2-9,17-34,36-40,42-46,60-67
1jej d1jeja_ A:2-8,17-34,36-40,42-46,60-66
1nvk d1nvka_ A:2-8,17-34,36-40,42-46,60-66
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 734 (enumeration index: query1299) of S5
3ikv A:80-87,89-98,104-112,118-123,142-147
3ikv B:80-87,89-98,104-112,118-123,142-147
3cyf A:4-11,15-30,31-38,49-53,68-75
3uk7 A:5-11,16-31,32-38,60-72,83-90
3uk7 C:5-11,16-31,32-38,60-72,83-89
3uk7 B:196-204,209-224,224-231,253-265,276-283
3uk7 A:198-204,209-224,225-231,253-266,276-283
3uk7 C:198-204,209-224,225-231,253-263,276-283
3uk7 B:5-11,17-31,32-38,60-72,83-89
3bhn A:1-8,13-28,30-37,47-52,63-69
3cza A:4-11,15-30,31-38,49-53,68-75
3pq6 B:599-607,612-627,627-634,645-650,663-669
3pq6 A:599-607,612-627,627-634,645-650,663-669
3pq6 C:599-607,613-627,627-634,645-650,663-669
3pq6 D:599-607,613-627,627-634,645-650,663-669
3ttw B:599-607,612-627,627-634,645-650,663-669
3ttw A:599-607,612-627,627-634,645-650,663-669
3ttw C:599-607,613-627,627-634,645-650,663-669
3ttw D:599-607,612-627,627-634,645-650,663-669
3l18 B:1-7,12-27,28-34,45-50,63-69
3l18 A:1-7,12-27,28-34,45-50,63-69
3lc7 O:2-9,11-25,26-34,63-68,91-96
2qz9 B:5-12,15-29,31-39,46-51,69-74
2qz9 A:5-12,15-29,31-39,44-51,69-74
2qz9 C:5-12,15-29,31-39,44-51,69-74
3ttt B:599-607,612-627,627-634,645-650,663-669
3ttt C:599-607,612-627,627-634,645-650,663-669
3ttt D:599-607,612-627,627-634,645-650,663-669
3llg A:4-9,12-26,31-36,43-48,66-71
3b3a A:4-11,15-30,31-38,49-53,68-75
3cz9 A:4-11,15-30,31-38,49-53,68-75
3pq8 B:599-607,612-627,627-634,645-650,663-669
3pq8 C:599-607,612-627,627-634,645-650,663-669
3pq8 D:599-607,612-627,627-634,645-650,663-669
3pq3 B:599-607,612-627,627-634,645-650,663-669
3pq3 D:599-607,613-627,627-634,645-650,663-669
3pq3 C:599-607,613-627,627-634,645-650,663-669
3ewn A:51-60,65-80,80-89,99-103,116-122
2qyt A:5-12,14-32,34-41,61-67,82-87
2rk3 A:4-11,15-30,31-38,49-53,68-75
3pq7 B:599-607,612-627,627-634,645-650,663-669
3pq7 C:599-607,612-627,627-634,645-650,663-669
3pq7 D:599-607,613-627,627-634,645-650,663-669
3p9r B:599-607,612-627,627-634,645-650,663-669
3p9r A:599-607,612-627,627-634,645-650,663-669
3p9r C:599-607,612-627,627-634,645-650,663-669
3p9r D:599-607,612-627,627-634,645-650,663-669
1yzv A:12-19,30-49,52-61,65-69,103-111
3ttx D:599-607,612-627,627-634,645-650,663-669
3ttx C:599-607,613-627,627-634,645-650,663-669
3ttx B:599-607,612-627,627-634,645-650,663-669
3ijp A:1-7,10-24,26-33,40-44,69-75
3b38 A:4-11,15-30,31-38,49-53,68-75
3er6 D:8-16,20-39,42-50,60-66,76-83
3er6 C:8-16,20-39,42-50,60-66,76-82
3er6 E:8-16,20-39,42-50,60-66,76-83
3er6 B:9-16,20-38,43-50,60-66,76-83
3er6 F:8-16,20-39,42-50,60-66,76-83
3er6 A:8-16,20-39,42-50,60-66,76-83
3ttu A:599-607,612-627,627-634,645-650,663-669
3ttu C:599-607,612-627,627-634,645-650,663-669
3ttu D:599-607,613-627,627-634,645-650,663-669
3ttu B:599-607,612-627,627-634,645-650,663-669
2yv3 B:1-7,10-24,28-35,41-46,63-68
2yv3 A:1-7,10-24,28-35,41-46,63-68
3ttv B:599-607,612-627,627-634,645-650,663-669
3ttv D:599-607,612-627,627-634,645-650,663-669
3ttv C:599-607,613-627,627-634,645-650,663-669
3ttv A:599-607,612-627,627-634,645-650,663-669
3g17 E:4-9,11-26,28-32,36-43,64-69
3g17 G:4-9,11-26,28-32,36-43,64-69
2r1v B:4-11,15-30,31-38,49-53,68-75
2r1v A:4-11,15-30,31-38,49-53,68-75
3pq5 D:600-607,612-627,627-634,645-650,663-669
3pq5 B:599-607,612-627,627-634,645-650,663-669
3pq5 C:599-607,612-627,627-634,645-650,663-669
2r1t B:4-11,15-30,31-38,49-53,68-75
2r1t A:4-11,15-30,31-38,49-53,68-75
2rk6 A:4-11,15-30,31-38,49-53,68-75
3cy6 A:4-11,15-30,31-38,49-53,68-75
3ezg A:4-11,15-30,31-38,49-53,68-75
3il2 B:80-87,89-98,104-112,118-123,142-147
3il2 A:80-87,89-98,104-112,118-123,142-147
3b36 A:4-11,15-30,31-38,49-53,68-75
3pq2 B:599-607,612-627,627-634,645-650,663-669
3pq2 D:599-607,612-627,627-634,645-650,663-669
3pq2 C:599-607,612-627,627-634,645-650,663-669
3sf8 B:4-11,15-30,31-38,49-53,68-74
3sf8 A:4-11,15-30,31-38,49-53,68-74
3ot1 B:7-14,18-33,34-41,52-57,70-77
3ot1 A:7-14,18-33,34-41,52-57,70-77
3ikt A:80-87,89-98,104-112,118-123,142-147
3ikt B:80-87,89-98,104-112,118-123,142-147
3cne C:3-10,15-29,30-37,48-53,68-73
3cne A:4-10,15-29,31-37,48-53,68-73
3cne D:3-10,15-29,30-37,48-53,68-73
3cne B:4-10,15-29,31-37,48-53,68-73
3p9p B:599-607,612-627,627-634,645-650,663-669
3p9p C:599-607,612-627,627-634,645-650,663-669
3p9p D:599-607,612-627,627-634,645-650,663-669
2vrn A:10-16,21-36,37-43,56-64,77-83
3f71 A:4-11,15-30,31-38,49-53,68-75
3pq4 C:599-607,612-627,627-634,645-650,663-669
3pq4 D:599-607,612-627,627-634,645-650,663-669
3pq4 B:599-607,612-627,627-634,645-650,663-669
3p9s C:599-607,612-627,627-634,645-650,663-669
3p9s D:599-607,612-627,627-634,645-650,663-669
3p9s A:599-607,613-627,627-634,645-650,663-669
3p9s B:599-607,612-627,627-634,645-650,663-669
2r00 A:5-12,15-29,31-39,44-51,69-74
2r00 C:5-12,15-29,31-39,44-51,69-74
3p9q C:599-607,612-627,627-634,645-650,663-669
3p9q D:599-607,612-627,627-634,645-650,663-669
3p9q B:599-607,612-627,627-634,645-650,663-669
2rk4 A:4-11,15-30,31-38,49-53,68-75
2gz3 B:3-9,12-25,30-36,41-48,66-71