1.   c.2.1         NAD(P)-binding Rossmann-fold domains    
                   NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
                   2d3t  d2d3ta3  A:322-337,338-344,346-368,371-383,471-486
                   2d3t  d2d3tb3  B:322-337,338-344,346-368,371-383,471-486

2.   c.1.12        Phosphoenolpyruvate/pyruvate domain    
                   TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
                   1jqo  d1jqoa_  A:250-271,282-289,300-331,433-447,683-705

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1088 (enumeration index: query1304.1449) of S5

3oy7  B:198-214,217-224,231-244,247-255,342-356
3oy7  A:198-214,217-224,231-244,247-255,342-356
3ru9  D:2-16,17-23,26-40,65-73,238-252
3ru9  A:2-16,17-23,26-40,65-73,238-252
3ru9  B:2-16,17-23,26-40,65-73,238-252
3hxp  A:161-188,191-199,212-221,225-236,298-315
3rua  D:2-16,17-23,26-40,65-73,238-252
3rua  A:2-16,17-23,26-40,65-73,238-252
3rua  C:2-16,17-23,26-40,65-73,238-252
3rua  B:2-16,17-23,26-40,65-73,238-252
3n4k  A:11-26,26-36,40-48,50-57,137-154
3rud  C:2-16,17-23,26-40,65-73,238-252
3rud  A:2-16,17-23,26-40,65-73,238-252
3rud  B:2-16,17-23,26-40,65-73,238-252
3be6  B:154-177,181-186,199-210,214-221,291-310
3be6  D:154-177,181-186,199-210,214-221,291-310
3be6  C:154-177,181-186,199-210,214-221,291-310
3be6  A:154-177,181-186,199-210,214-221,291-310
3kty  C:17-32,35-40,49-57,59-66,153-170
3kty  A:17-32,35-40,49-57,59-66,153-170
3kty  B:17-32,35-40,49-57,59-66,153-170
3ruh  D:2-16,17-23,26-40,65-73,238-252
3ruh  A:2-16,17-23,26-40,65-73,238-252
3ruh  B:2-16,17-23,26-40,65-73,238-252
3ruh  C:2-16,17-23,26-40,65-73,238-252
3be5  A:154-177,181-186,199-210,214-221,291-310
3be5  C:154-177,181-186,199-210,214-221,291-310
3be5  D:154-177,181-186,199-210,214-221,291-310
3be5  B:154-177,181-186,199-210,214-221,291-310
3g9q  A:161-188,191-199,212-221,225-236,298-315
3lu1  A:2-16,17-23,26-40,65-73,238-252
3lu1  C:3-16,17-23,26-40,65-73,238-252
3lu1  B:3-16,17-23,26-40,65-73,238-252
3ilk  B:14-29,32-37,42-50,52-59,141-164
3oy2  B:198-214,217-224,231-244,247-255,342-356
3oy2  A:198-214,217-224,231-244,247-255,342-356
3ru7  A:2-16,17-23,26-40,65-73,238-252
3ru7  D:2-16,17-23,26-40,65-73,238-252
3ru7  B:2-16,17-23,26-40,65-73,238-252
3ruf  B:2-16,17-23,26-40,65-73,238-252
3ruf  A:2-16,17-23,26-40,65-73,238-252
3ruf  S:2-16,17-23,26-40,65-73,238-252
3ruf  B:2-16,17-23,26-40,65-73,238-252
3onp  A:14-29,32-37,44-52,54-61,146-161
3ruc  C:2-16,17-23,26-40,65-73,238-252
3ruc  D:2-16,17-23,26-40,65-73,238-252
2yhg  A:536-550,553-561,572-586,598-607,738-750