1. c.1.12 Phosphoenolpyruvate/pyruvate domain
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
2dik d2dika1 A:342-357,360-369,518-532,534-539,855-874
1kbl d1kbla1 A:342-357,360-368,518-532,534-540,855-873
1vbg d1vbga1 A:345-360,363-372,521-536,537-544,860-876
1dik d1dika1 A:342-357,360-369,518-532,534-541,855-874
1jde d1jdea1 A:342-357,360-369,518-532,534-541,855-874
2r82 d2r82a1 A:342-357,360-369,518-532,534-541,855-873
1vbh d1vbha1 A:345-360,363-372,522-536,537-544,860-876
1ggo d1ggoa1 A:342-357,360-368,518-532,534-541,855-874
1kc7 d1kc7a1 A:342-357,360-368,518-532,534-541,855-873
2. d.106.1 SCP-like
SCP-like alpha-beta(3)-(crossover)-beta-(alpha)-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 32145
2cg2 d2cg2a1 A:199-212,531-539,539-551,560-569,601-611
2cfz d2cfza1 A:199-212,531-539,539-551,560-569,601-611
3. c.70.1 Nucleoside hydrolase
Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest
3b9x d3b9xc1 C:13-26,210-218,238-250,286-294,294-309
4. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1o5w d1o5wd1 D:3117-3139,3148-3156,3190-3202,3405-3411,3412-3425
1o5w d1o5wa1 A:117-139,148-156,190-202,405-411,412-425
5. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1mur d1mura_ A:24-42,53-66,70-90,136-149,345-371
1muh d1muha_ A:24-42,53-66,70-90,136-149,345-371
1mm8 d1mm8a_ A:24-42,53-66,70-89,136-149,345-372
3ecp d3ecpa1 A:24-42,53-66,70-90,136-149,345-372
1mus d1musa_ A:24-42,53-66,70-90,136-149,345-372
6. e.6.1 Acyl-CoA dehydrogenase NM domain-like flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles) !
Acyl-CoA dehydrogenase NM domain-like 2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
1ege d1egec2 C:49-60,76-92,91-112,165-169,360-375
2a1t d2a1tb2 B:49-60,76-92,91-112,165-169,360-375
2a1t d2a1tc2 C:49-60,76-92,91-112,165-169,360-375
1t9g d1t9ga2 A:49-60,76-92,91-112,165-169,360-375
2a1t d2a1td2 D:49-60,76-92,91-112,165-169,360-375
2a1t d2a1ta2 A:49-60,76-92,91-112,165-169,360-375
1egc d1egcc2 C:49-60,76-92,91-112,165-169,360-375
1egd d1egdc2 C:49-60,76-92,91-112,165-169,360-375
1t9g d1t9gc2 C:49-60,76-92,91-112,165-169,360-375
1egd d1egdb2 B:49-60,76-92,91-112,165-169,360-375
3mde d3mdeb2 B:49-60,76-92,91-112,165-169,360-375
3mdd d3mdda2 A:49-60,76-92,91-112,165-169,360-375
1egc d1egcd2 D:49-60,76-92,91-112,165-169,360-375
1ege d1eged2 D:49-60,76-92,91-112,165-169,360-375
3mde d3mdea2 A:49-60,76-92,91-112,165-169,360-375
1egd d1egda2 A:49-60,76-92,91-112,165-169,360-375
3mdd d3mddb2 B:49-60,76-92,91-112,165-169,360-375
1t9g d1t9gd2 D:49-60,76-92,91-112,165-169,360-375
1ukw d1ukwb2 B:69-80,96-112,111-132,185-189,377-392
1ege d1egeb2 B:49-60,76-92,91-112,165-169,360-375
1t9g d1t9gb2 B:49-60,76-92,91-112,165-169,360-375
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1190 (enumeration index: query1312.1997) of S5
3pfd B:48-59,75-91,90-111,164-168,357-372
3pfd A:48-59,75-91,90-111,164-168,357-372
3pfd C:48-59,75-91,90-111,164-168,357-372
3pfd D:48-59,75-91,90-111,164-168,357-372
3c3l B:562-573,578-589,956-978,1053-1059,1079-1095
3c2p A:562-573,578-589,959-978,1053-1058,1079-1103
2x0s A:369-384,387-396,543-557,559-565,879-903
2ix6 B:88-99,114-130,129-151,204-208,392-407
2ix6 A:88-99,114-130,129-151,204-208,392-407
2ix6 C:88-99,114-130,129-151,204-208,392-407
2ix6 D:88-99,114-130,129-151,204-208,392-407
2ix6 E:88-99,114-130,129-151,204-208,392-407
2ix6 F:88-99,114-130,129-151,204-208,392-407
3g5i C:12-26,210-222,239-251,287-295,295-311
3g5i B:12-26,210-224,239-251,287-295,295-311
3q23 A:562-573,578-589,959-978,1053-1058,1079-1100
3q23 B:562-573,578-589,959-978,1053-1059,1079-1098
3q0a A:562-573,578-589,959-978,1053-1058,1079-1100
3q0a B:562-573,578-589,959-978,1053-1058,1079-1098
3mve A:97-117,117-137,143-164,166-176,209-216
3mve B:97-116,117-137,143-164,166-176,209-217
3c46 A:562-573,578-589,959-978,1053-1058,1079-1100
3c46 B:562-573,578-589,956-978,1053-1059,1079-1098
2ix5 B:88-99,114-130,129-151,204-208,392-407
2ix5 C:88-99,114-130,129-151,204-208,392-407
2ix5 D:88-99,114-130,129-151,204-208,392-407
2ix5 A:88-99,114-130,129-151,204-208,392-407
2po4 A:562-573,578-589,959-978,1053-1058,1079-1104
3q22 B:562-573,578-589,959-978,1053-1058,1079-1098
3q22 A:562-573,578-589,959-978,1053-1058,1079-1100
3d68 A:75-89,94-101,162-180,358-367,375-401
3d68 C:75-91,94-101,162-180,358-366,375-401
3d68 C:75-91,94-101,162-180,280-291,375-401
3d68 A:75-89,94-101,162-180,280-291,375-401
3d67 C:75-91,94-101,162-180,280-290,375-401
3d67 C:75-91,94-101,162-180,358-365,375-401
2o1s A:8-15,24-43,56-68,248-256,258-272
2o1s C:8-15,16-24,56-68,173-181,258-272
2o1s C:8-15,16-24,56-68,248-256,258-272
3iyl U:181-197,202-221,277-295,324-329,399-412
3our E:97-116,117-137,143-164,166-176,209-216
3our C:97-116,117-137,143-164,166-176,209-217
3our A:97-116,117-137,143-164,166-176,209-217
3our G:97-116,117-137,143-164,166-176,209-216
3q24 A:562-573,578-589,959-978,1053-1059,1079-1100
3q24 B:562-573,578-589,959-978,1053-1059,1079-1098