1. c.23.4 Succinyl-CoA synthetase domains
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1scu d1scud2 D:90-95,124-129,131-136,153-168,172-177
2nu8 d2nu8a2 A:66-71,124-129,131-136,153-168,172-177
2nu8 d2nu8a2 A:90-95,124-129,131-136,153-168,172-177
2nu8 d2nu8d2 D:66-71,124-129,131-136,153-168,172-177
2nu8 d2nu8d2 D:90-96,124-129,131-136,153-168,172-177
2nu7 d2nu7d2 D:66-71,124-129,131-136,153-168,172-177
2nu7 d2nu7a2 A:66-71,124-129,131-136,153-168,172-177
1cqj d1cqjd2 D:90-95,124-129,131-136,153-168,172-177
2nu7 d2nu7d2 D:90-95,124-129,131-136,153-168,172-177
1cqj d1cqja2 A:90-95,124-129,131-136,153-168,172-177
2nu7 d2nu7a2 A:90-95,124-129,131-136,153-168,172-177
2nu8 d2nu8d2 D:116-120,124-129,131-136,153-168,172-177
2nu9 d2nu9h2 H:90-95,124-129,131-136,153-168,172-177
2nu9 d2nu9a2 A:90-95,124-129,131-136,153-168,172-177
2nu9 d2nu9d2 D:90-95,124-129,131-136,153-168,172-177
2nu6 d2nu6d2 D:66-71,124-129,131-136,153-168,172-177
2nu9 d2nu9f2 F:90-95,124-129,131-136,153-168,172-177
2nu6 d2nu6a2 A:66-71,124-129,131-136,153-168,172-177
2nu6 d2nu6d2 D:90-95,124-129,131-136,153-168,172-177
2scu d2scua2 A:90-95,124-129,131-136,153-168,172-177
2nu7 d2nu7a2 A:116-120,124-129,131-136,153-168,172-177
2nu9 d2nu9d2 D:66-71,124-129,131-136,153-168,172-177
2nu9 d2nu9a2 A:66-71,124-129,131-136,153-168,172-177
2nu6 d2nu6a2 A:90-95,124-129,131-136,153-168,172-177
2nu9 d2nu9h2 H:66-71,124-129,131-136,153-168,172-177
2nua d2nuad2 D:90-96,124-129,131-136,153-168,172-177
2fpg d2fpga2 A:74-79,133-138,140-145,162-177,181-186
2nu9 d2nu9f2 F:66-71,124-129,131-136,153-168,172-177
2nua d2nuaa2 A:90-96,124-129,131-136,153-168,172-177
2scu d2scua2 A:66-71,124-129,131-136,153-168,172-177
2fpg d2fpga2 A:98-103,133-138,140-145,162-177,181-186
1euc d1euca2 A:74-79,133-138,140-145,162-177,181-186
2nu6 d2nu6d2 D:116-120,124-129,131-136,153-168,172-177
1euc d1euca2 A:98-103,133-138,140-145,162-177,181-186
1cqj d1cqja2 A:66-71,124-129,131-136,153-168,172-177
2nu6 d2nu6a2 A:116-120,124-129,131-136,153-168,172-177
1jkj d1jkjd2 D:66-71,124-129,131-136,153-168,172-177
1cqj d1cqjd2 D:66-71,124-129,131-136,153-168,172-177
1scu d1scud2 D:66-71,124-129,131-136,153-168,172-177
2nua d2nuad2 D:66-71,124-129,131-136,153-168,172-177
2scu d2scua2 A:116-120,124-129,131-136,153-168,172-177
1jkj d1jkja2 A:66-71,124-129,131-136,153-168,172-177
2nua d2nuaa2 A:66-71,124-129,131-136,153-168,172-177
1scu d1scud2 D:116-122,124-129,131-136,153-168,172-177
2fp4 d2fp4a2 A:98-103,133-138,140-145,162-177,179-186
1jll d1jlld2 D:90-95,125-129,131-135,153-168,172-177
2scu d2scud2 D:90-95,124-129,131-136,153-168,172-177
1jll d1jlla2 A:90-95,125-129,131-135,153-168,172-177
2fp4 d2fp4a2 A:74-79,133-138,140-145,162-177,179-186
1jkj d1jkja2 A:90-95,124-129,131-136,153-168,172-177
1jkj d1jkjd2 D:90-96,124-129,131-136,153-168,172-177
2fpi d2fpia2 A:98-103,133-138,140-145,162-177,181-186
1jkj d1jkjd2 D:116-120,124-129,131-136,153-168,172-177
1jkj d1jkja2 A:116-120,124-129,131-136,153-168,172-177
2nu8 d2nu8a2 A:116-122,124-129,131-136,153-168,172-177
2fpi d2fpia2 A:74-79,133-138,140-145,162-177,181-186
2nu7 d2nu7d2 D:116-122,124-129,131-136,153-168,172-177
2scu d2scud2 D:66-71,124-129,131-136,153-168,172-177
2nu9 d2nu9d2 D:116-122,124-129,131-136,153-168,172-177
2nu9 d2nu9a2 A:116-122,124-129,131-136,153-168,172-177
1oi7 d1oi7a2 A:116-122,122-129,131-136,153-168,172-178
2nu9 d2nu9h2 H:116-122,124-129,131-136,153-168,172-177
2nu9 d2nu9f2 F:116-122,124-129,131-136,153-168,172-177
1cqj d1cqjd2 D:116-122,124-129,131-136,153-168,172-177
1cqj d1cqja2 A:116-122,124-129,131-136,153-168,172-177
2nua d2nuad2 D:116-122,124-129,131-136,153-168,172-177
2nua d2nuaa2 A:116-122,124-129,131-136,153-168,172-177
1oi7 d1oi7a2 A:66-71,122-129,131-136,153-168,172-178
1oi7 d1oi7a2 A:90-95,122-129,131-136,153-168,172-178
2fpp d2fppa2 A:125-131,131-138,140-145,162-177,181-188
1cqi d1cqid2 D:90-95,125-129,131-135,153-168,172-177
1eud d1euda2 A:74-79,133-138,140-145,162-177,181-188
1cqi d1cqia2 A:90-95,125-129,131-135,153-168,172-177
1eud d1euda2 A:98-104,133-138,140-145,162-177,181-188
2scu d2scud2 D:116-122,124-129,131-136,153-168,172-177
1scu d1scua2 A:90-95,124-129,131-136,153-168,172-179
1euc d1euca2 A:125-131,133-138,140-145,162-177,181-186
2fpp d2fppa2 A:98-103,131-138,140-145,162-177,181-188
2fp4 d2fp4a2 A:125-131,133-138,140-145,162-177,179-186
1jll d1jlld2 D:116-122,125-129,131-135,153-168,172-177
1jll d1jlla2 A:116-122,125-129,131-135,153-168,172-177
2fpg d2fpga2 A:125-131,133-138,140-145,162-177,181-186
2fpi d2fpia2 A:125-131,133-138,140-145,162-177,181-186
2fpp d2fppa2 A:74-79,131-138,140-145,162-177,181-188
1scu d1scua2 A:66-71,124-129,131-136,153-168,172-179
1jll d1jlld2 D:66-71,125-129,131-135,153-168,172-177
1jll d1jlla2 A:66-71,125-129,131-135,153-168,172-177
1cqi d1cqid2 D:116-122,125-129,131-135,153-168,172-177
1cqi d1cqia2 A:116-122,125-129,131-135,153-168,172-177
1scu d1scua2 A:116-122,124-129,131-136,153-168,172-179
1cqi d1cqia2 A:66-71,125-129,131-135,153-168,172-177
1eud d1euda2 A:125-131,133-138,140-145,162-177,181-188
1cqi d1cqid2 D:66-71,125-129,131-135,153-168,172-177
2csu d2csua2 A:90-95,131-136,137-142,158-173,176-182
2csu d2csub2 B:90-95,131-136,137-142,158-173,177-182
2csu d2csua2 A:66-71,131-136,137-142,158-173,176-182
2csu d2csub2 B:66-71,131-136,137-142,158-173,177-182
2. e.52.1 NAD kinase/diacylglycerol kinase-like
NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit]
1y3i d1y3ib1 B:149-158,159-165,189-195,198-207,250-257
1u0t d1u0ta_ A:149-158,159-166,189-195,200-207,250-257
1u0r d1u0rb_ B:149-158,159-166,189-195,200-207,250-257
1u0r d1u0rd_ D:149-158,159-166,189-195,200-207,250-257
1u0r d1u0ra_ A:149-158,159-166,189-195,200-207,250-257
1u0t d1u0tb_ B:149-158,159-166,189-195,200-207,250-257
3. d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology !
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
2q2u d2q2uc2 C:6-10,30-36,38-42,49-61,63-70
2q2u d2q2ud2 D:6-10,30-36,38-42,49-61,63-70
2q2u d2q2ua2 A:6-10,30-36,38-42,49-61,63-70
2q2t d2q2ta2 A:6-10,30-36,38-42,49-61,63-70
1p8l d1p8la2 A:6-10,30-36,38-42,49-61,63-70
1fvi d1fvia2 A:6-10,30-36,38-42,49-61,63-70
4. b.2.5 p53-like transcription factors
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1le5 d1le5f2 F:79-86,91-100,120-125,164-171,208-218
1nfk d1nfka2 A:79-86,90-99,119-126,164-171,208-220
1le5 d1le5b2 B:79-86,91-99,120-125,164-171,208-218
2v2t d2v2tb2 B:79-86,89-99,119-127,164-171,208-221
5. b.1.1 Immunoglobulin
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2hrl d2hrla1 A:38-51,61-68,77-81,84-91,118-128
6. d.110.9 GlcG-like alpha-beta(2)-alpha(3)-beta(2)-alpha; similar to the Roadblock/LC7 domain !
Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
2a2l d2a2la1 A:6-14,36-43,45-53,57-75,115-125
2a2l d2a2lb1 B:6-14,36-43,45-53,57-75,115-125
2a2l d2a2ld1 D:6-14,36-43,45-53,57-75,115-125
2a2l d2a2lc1 C:6-14,36-43,45-53,57-75,115-125
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 484 (enumeration index: query1315.1383.1616) of S5
3bq8 A:68-72,83-91,93-99,102-110,171-180
3bq8 B:68-72,83-91,93-99,102-110,169-180
2vug B:63-67,98-107,108-115,120-127,141-151
2vug A:63-67,98-107,108-115,120-127,141-151
2vug A:63-67,98-107,108-115,132-140,141-151
2vug B:63-67,98-107,108-115,132-140,141-151
1y3h A:149-158,159-166,189-195,200-207,250-257
2yv1 A:72-77,130-135,137-141,159-174,178-183
2yv1 A:96-101,130-135,137-141,159-174,178-183
2yv1 A:122-128,130-135,137-141,159-174,178-183
3ohg A:88-95,144-148,149-154,176-184,186-194
3lib F:164-174,217-224,226-230,234-242,287-296
3lib E:164-174,217-224,226-230,234-242,287-296
3lib H:164-174,217-224,226-230,248-261,287-296
3lib G:164-174,217-224,226-230,248-261,287-296
3lib F:164-174,217-224,226-230,248-261,287-296
3lib C:164-174,217-224,226-230,248-261,287-296
3lib E:164-174,217-224,226-230,248-261,287-296
3ov6 A:1060-1071,6-20,22-33,59-85,92-106
1yax B:68-72,83-91,93-99,102-110,169-180
1yax A:68-72,83-91,93-99,102-110,171-180
1yax D:68-72,83-91,93-99,102-110,169-180
1yax C:68-72,83-91,93-99,102-110,171-180
1yt5 D:112-118,119-125,149-155,160-167,209-214
3pi7 A:49-56,56-60,84-89,325-333,343-348
2i2c A:112-121,122-129,150-156,161-168,215-222
2y38 A:157-170,173-181,187-195,196-205,261-270
2c5u B:29-38,102-111,112-119,124-137,153-163
2c5u A:29-38,102-111,112-119,124-137,153-163
3dmy B:142-148,177-181,182-186,202-217,221-226
3dmy A:169-174,177-181,182-186,202-217,222-226
3dmy B:119-125,177-181,182-186,202-217,221-226
3dmy A:119-124,177-181,182-186,202-217,222-226
3dmy A:142-147,177-181,182-186,202-217,222-226
2yv2 A:97-102,131-136,138-142,160-175,179-184
2yv2 A:123-129,131-136,138-142,160-175,179-184
3lia B:165-175,218-225,227-231,235-243,288-297
3lia A:166-175,217-225,227-232,249-262,288-297
3lia B:165-175,218-225,227-231,249-262,288-297
3li9 A:165-175,218-225,227-231,235-243,288-297
3li9 A:165-175,218-225,227-231,249-262,288-297
3gut H:379-386,389-399,419-427,464-471,508-519
3gut B:379-386,389-401,419-428,464-471,508-521
3gut D:379-386,389-399,419-428,464-471,508-519
3gut F:379-386,389-400,419-427,464-471,508-521
3h3l A:107-117,120-129,142-147,151-158,248-255
3h3l B:107-117,120-129,139-147,151-158,248-255
3h3l A:107-117,120-129,142-147,234-244,248-255
3h3l A:81-88,120-129,142-147,151-158,248-255
3h3l C:107-117,120-129,139-147,151-158,248-255
3h3l C:81-87,120-129,139-147,151-158,248-255
3fpv G:22-30,51-59,61-70,73-91,126-136
3fpv A:22-30,51-59,61-70,73-91,126-136
3fpv B:22-30,51-59,61-70,73-91,126-136
3fpv C:22-30,51-59,61-70,73-91,126-136
3fpv H:22-30,51-59,61-70,73-91,126-136
3fpv E:22-30,51-59,61-70,73-91,126-137
3fpv F:22-30,51-59,61-70,73-91,126-136
3bqa A:68-72,83-91,93-99,102-110,171-180
3bqa B:68-72,83-91,93-99,102-110,169-180
3li8 A:165-175,218-225,227-231,249-262,288-297
3qwu A:45-50,80-89,90-97,102-109,123-133
3qwu B:45-50,80-89,90-97,102-109,123-133
3qwu B:45-50,80-89,90-97,114-122,123-133
3qwu A:45-50,80-89,90-97,114-122,123-133