2. d.277.1 Bacillus phage protein Bacillus phage protein alpa-beta(3)-alpha-beta(3)-alpha; 3 layers: b/a/b, 3-helical bundle flanked by two 3-stranded meander beta-sheets 1r7l d1r7la_ A:40-52,53-60,65-73,74-82,83-96 1r7l d1r7lb_ B:40-52,53-60,65-73,74-82,83-97 3. d.315.1 TRCF domain-like TRCF domain-like beta-alpha(3)-beta(2)-alpha-beta(2)-alpha; 2 layers: alpha/beta; mixed beta sheet, order 12354, strands 1 and 2 are parallel; some topological similarity to the DCoH-like fold (scop_cf 55247) 2eyq d2eyqb6 B:1054-1074,1074-1082,1083-1090,1117-1125,1127-1146 2eyq d2eyqa6 A:1054-1074,1074-1082,1083-1090,1117-1125,1127-1146 4. d.199.1 DNA-binding C-terminal domain of the transcription factor MotA MotA C-terminal domain-like alpha-beta(4)-alpha-beta(2)-alpha; 2 layers: alpha/beta 1kaf d1kafe_ E:109-125,127-135,136-143,148-156,197-211 1kaf d1kaff_ F:108-125,127-135,136-143,148-156,197-211 1kaf d1kafd_ D:108-125,127-135,136-143,148-156,197-211 1kaf d1kafb_ B:107-125,127-135,136-143,148-156,197-211 1kaf d1kafa_ A:107-125,127-135,136-143,148-156,197-211 1kaf d1kafa_ A:107-125,148-156,158-166,188-196,197-211 1kaf d1kafe_ E:109-125,148-156,158-166,188-196,197-211 1kaf d1kaff_ F:108-125,148-156,158-166,188-196,197-211 1kaf d1kafb_ B:107-125,148-156,158-166,188-196,197-211 1kaf d1kafd_ D:108-125,148-156,158-166,188-196,197-211 1kaf d1kafc_ C:107-125,127-135,136-143,148-156,197-211 1kaf d1kafc_ C:107-125,148-156,158-165,188-196,197-211 5. d.198.3 YjbR-like overall similar to the Type III secretory system chaperone subunits; different shape of the beta-sheet ! Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta 2a1v d2a1va1 A:9-21,22-27,32-40,43-52,100-121 2a1v d2a1va1 A:9-21,43-52,56-63,89-96,100-121 2fki d2fkia1 A:2-14,36-43,44-52,77-84,88-108 2fki d2fkia1 A:2-14,16-23,24-32,36-43,88-108 6. c.51.1 Class II aaRS ABD-related Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1wu7 d1wu7b1 B:344-359,384-390,397-405,406-414,413-424 1ati d1atia1 A:410-428,453-459,475-483,484-492,491-504 1ati d1atib1 B:410-428,453-459,475-483,484-492,491-504 1ggm d1ggma1 A:410-428,453-459,475-483,484-492,491-504 1qe0 d1qe0a1 A:338-356,381-387,394-402,403-411,410-420 1qe0 d1qe0b1 B:338-356,381-387,394-402,403-411,410-419 1wu7 d1wu7a1 A:344-359,384-390,397-405,406-414,413-425 1htt d1httc1 C:339-356,382-388,395-403,404-412,411-424 1htt d1httd1 D:339-356,382-388,395-403,404-412,411-424 1htt d1httb1 B:339-356,382-388,395-403,404-412,411-424 1htt d1htta1 A:339-356,382-388,395-403,404-412,411-424 1kmm d1kmmc1 C:339-356,382-388,395-403,404-412,411-424 1kmm d1kmmb1 B:339-356,382-388,395-403,404-412,411-424 1kmm d1kmma1 A:339-356,382-388,395-403,404-412,411-424 1kmm d1kmmd1 D:339-356,382-388,395-403,404-412,411-424 2el9 d2el9c1 C:339-356,382-388,395-403,404-412,411-424 1kmn d1kmna1 A:339-356,382-388,395-403,404-412,411-424 2el9 d2el9a1 A:339-356,382-388,395-403,404-412,411-424 1b76 d1b76b1 B:410-428,453-459,476-483,484-491,491-504 1kmn d1kmnd1 D:339-356,382-388,395-403,404-412,411-424 1kmn d1kmnb1 B:339-356,382-388,395-403,404-412,411-424 1kmn d1kmnc1 C:339-356,382-388,395-403,404-412,411-424 2el9 d2el9b1 B:339-356,382-388,395-403,404-412,411-424 1b76 d1b76a1 A:410-428,453-459,476-483,484-491,491-504 2el9 d2el9d1 D:339-356,382-388,395-403,404-412,411-424 1nyr d1nyra1 A:558-573,598-604,612-618,622-627,627-642 1nyq d1nyqa1 A:554-573,598-604,612-618,623-627,627-642 1g5h d1g5hd1 D:365-384,412-418,425-433,434-442,441-459 1h4v d1h4vb1 B:337-352,379-385,392-400,401-409,408-421 1g5i d1g5id1 D:365-384,412-418,425-433,434-442,441-459 1ggm d1ggmb1 B:410-428,453-459,477-483,484-490,491-505 1adj d1adjd1 D:337-352,379-385,392-400,401-409,408-421 1ady d1adyb1 B:337-352,379-385,392-400,401-409,408-421 1ady d1adyd1 D:337-352,379-385,392-400,401-409,408-421 1adj d1adja1 A:337-352,379-385,392-400,401-409,408-421 1adj d1adjb1 B:337-352,379-385,392-400,401-409,408-421 2g4c d2g4cd1 D:391-410,438-445,451-459,460-468,467-485 2g4c d2g4cc1 C:391-410,438-445,451-459,460-468,467-485 1ady d1adya1 A:337-352,379-385,392-400,401-409,408-421 1adj d1adjc1 C:337-352,379-385,392-400,401-409,408-421 1ady d1adyc1 C:337-352,379-385,392-400,401-409,408-421 1fyf d1fyfa1 A:548-566,591-597,605-611,613-620,620-635 2g4c d2g4ca1 A:391-410,438-444,451-459,460-468,467-485 2g4c d2g4cb1 B:391-410,438-444,451-459,460-468,467-485 1evk d1evka1 A:548-566,591-597,605-611,613-620,620-635 1evl d1evld1 D:548-566,591-597,605-611,613-620,620-635 1fyf d1fyfb1 B:548-566,591-597,605-611,613-620,620-635 1evk d1evkb1 B:548-566,591-597,605-611,613-620,620-635 1kog d1kogd1 D:548-566,591-597,605-611,613-620,620-635 1kog d1kogc1 C:548-566,591-597,605-611,613-620,620-635 1kog d1koge1 E:548-566,591-597,605-611,613-620,620-635 1kog d1kogf1 F:548-566,591-597,605-611,613-620,620-635 1kog d1kogg1 G:548-566,591-597,605-611,613-620,620-635 1kog d1kogh1 H:548-566,591-597,605-611,613-620,620-635 1kog d1koga1 A:548-566,591-597,605-611,613-620,620-635 1kog d1kogb1 B:548-566,591-597,605-611,613-620,620-635 1evl d1evla1 A:548-566,591-597,605-611,613-620,620-635 1evl d1evlb1 B:548-566,591-597,605-611,613-620,620-635 1evl d1evlc1 C:548-566,591-597,605-611,613-620,620-635 1qf6 d1qf6a1 A:548-566,591-597,605-611,613-620,620-635 1g5h d1g5hb1 B:365-384,412-418,425-433,434-442,441-460 1g5i d1g5ib1 B:365-384,412-418,425-433,434-442,441-460 1g5i d1g5ia1 A:365-384,412-418,425-433,434-442,441-464 1v95 d1v95a_ A:17-35,62-67,77-82,87-91,93-114 1g5h d1g5ha1 A:365-384,412-418,425-433,434-442,441-466 1g5i d1g5ic1 C:365-384,412-418,425-433,434-442,441-466 1g5h d1g5hc1 C:365-384,412-418,425-433,434-442,441-466 1h4s d1h4sa1 A:297-319,345-352,358-365,367-374,376-405 1h4q d1h4qa1 A:297-319,345-352,358-365,367-374,376-405 1h4t d1h4tb1 B:297-319,345-351,358-365,367-374,376-404 1h4t d1h4td1 D:297-319,345-351,358-365,367-374,376-404 1h4t d1h4ta1 A:297-319,345-351,358-365,367-374,376-404 1hc7 d1hc7d1 D:297-319,345-351,358-365,367-374,376-405 1hc7 d1hc7b1 B:297-319,345-351,358-365,367-374,376-405 1hc7 d1hc7c1 C:297-319,345-351,358-365,367-374,376-405 1nj1 d1nj1a1 A:307-326,351-357,364-372,373-381,383-412 1hc7 d1hc7a1 A:297-319,345-351,358-365,367-374,376-405 1nj6 d1nj6a1 A:307-326,351-357,364-372,373-381,383-412 1nj5 d1nj5a1 A:307-326,351-357,364-372,373-381,383-412 1nj2 d1nj2a1 A:307-326,351-357,364-372,373-381,383-412 8. d.250.1 Folate-binding domain some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase ! Folate-binding domain duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands 1vlo d1vloa2 A:5-15,43-50,141-150,193-201,200-215 1wos d1wosa2 A:4-14,42-49,140-149,192-200,199-218 1wor d1wora2 A:4-14,42-49,140-149,192-200,199-218 1wop d1wopa2 A:4-14,42-49,140-149,192-200,199-218 1woo d1wooa2 A:4-14,42-49,140-149,192-200,199-218 1pj7 d1pj7a4 A:433-443,499-506,601-610,655-663,662-678 1pj6 d1pj6a4 A:433-443,499-506,601-610,655-663,662-678 1pj5 d1pj5a4 A:433-443,499-506,601-610,655-663,662-678 1v5v d1v5vb2 B:10-18,46-53,150-159,202-210,224-242 1v5v d1v5va2 A:10-18,46-53,150-159,202-210,224-242 11. c.56.2 Purine and uridine phosphorylases complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8 ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 1t8s d1t8sd_ D:206-224,229-234,260-268,270-278,447-467 1rxc d1rxch_ H:27-39,38-48,49-58,59-68,236-253 1t8s d1t8sf_ F:206-224,228-234,260-268,270-278,447-467 1sq6 d1sq6a_ A:32-44,44-53,54-63,64-73,232-252 1y6q d1y6qa1 A:9-20,20-29,30-39,40-49,210-232 1jdv d1jdve_ E:22-34,33-43,44-53,54-62,218-236 1nc1 d1nc1a_ A:9-20,20-29,30-39,40-49,210-232 1jdt d1jdtc_ C:22-34,33-43,44-53,54-62,219-236 1t8s d1t8sc_ C:206-224,229-234,260-268,270-278,447-467 1y6r d1y6ra1 A:9-20,20-29,30-39,40-49,210-232 1xe3 d1xe3e_ E:21-33,33-43,44-53,54-62,213-234 1jdv d1jdvd_ D:22-34,33-43,44-53,54-62,218-236 1t8s d1t8sb_ B:206-224,229-234,260-268,270-278,446-467 1jdv d1jdva_ A:22-34,33-43,44-53,54-62,218-236 1q1g d1q1gc_ C:24-36,36-45,46-55,56-65,222-245 1t8s d1t8se_ E:206-224,229-234,260-268,270-278,447-467 1rxc d1rxca_ A:27-39,38-48,49-58,59-68,235-253 1q1g d1q1ge_ E:24-36,36-45,46-55,56-65,222-245 1t8s d1t8sa_ A:206-224,229-234,260-268,270-278,447-467 1nw4 d1nw4c_ C:24-36,36-45,46-55,56-65,222-245 1pr1 d1pr1a_ A:21-33,33-43,44-53,54-62,217-237 1y6q d1y6qb1 B:9-20,20-29,30-39,40-49,210-232 1k3f d1k3fb_ B:1027-1039,1038-1048,1049-1058,1059-1066,1233-1253 1pr5 d1pr5c_ C:21-33,33-43,44-53,54-62,219-237 1q1g d1q1gb_ B:24-36,36-45,46-55,56-65,222-245 1odk d1odke_ E:22-34,34-44,45-54,55-63,215-235 1pr4 d1pr4c_ C:21-33,33-43,44-53,54-62,217-237 1q1g d1q1ga_ A:24-36,36-45,46-55,56-65,222-245 1je0 d1je0c_ C:22-34,33-43,44-53,54-62,216-236 1nw4 d1nw4f_ F:24-36,36-45,46-55,56-65,222-245 1nw4 d1nw4e_ E:24-36,36-45,46-55,56-65,222-245 1nc1 d1nc1b_ B:9-20,20-29,30-39,40-49,210-232 1jp7 d1jp7c_ C:22-34,33-43,44-53,54-62,216-236 1xe3 d1xe3d_ D:21-33,33-43,44-53,54-62,213-234 1q1g d1q1gd_ D:24-36,36-45,46-55,56-65,222-245 1y6r d1y6rb1 B:9-20,20-29,30-39,40-49,210-232 1q1g d1q1gf_ F:24-36,36-45,46-55,56-65,222-245 1nw4 d1nw4b_ B:24-36,36-45,46-55,56-65,222-245 1nw4 d1nw4d_ D:24-36,36-45,46-55,56-65,222-245 1jdt d1jdtb_ B:22-34,33-43,44-53,54-62,215-236 1nw4 d1nw4a_ A:24-36,36-45,46-55,56-65,222-245 1jds d1jdsc_ C:22-34,33-43,44-53,54-62,215-236 1jds d1jdsf_ F:22-34,33-43,44-53,54-62,215-236 1nc3 d1nc3b_ B:9-20,20-29,30-39,40-48,210-230 1nc3 d1nc3a_ A:9-20,20-29,30-39,40-48,210-232 1jdt d1jdta_ A:22-34,33-43,44-53,54-62,215-236 1u1c d1u1cd1 D:27-39,38-48,49-58,59-67,234-253 1vhw d1vhwf_ F:22-35,34-44,45-54,55-63,217-238 1jdu d1jduc_ C:22-34,33-43,44-53,54-62,215-236 1pr2 d1pr2c_ C:21-33,33-43,44-53,54-62,217-237 1lv8 d1lv8a_ A:32-43,42-50,66-74,75-83,266-283 1je1 d1je1f_ F:22-34,33-43,44-53,54-62,215-236 1odk d1odkb_ B:22-34,34-44,45-54,55-63,213-235 1je1 d1je1c_ C:22-34,33-43,44-53,54-62,215-236 1pr6 d1pr6c_ C:21-33,33-43,44-53,54-62,218-237 1odk d1odkc_ C:22-34,34-44,45-54,55-63,212-235 1rt9 d1rt9a1 A:32-43,42-50,66-74,75-83,267-283 1jpv d1jpvc_ C:22-34,33-43,44-53,54-62,215-236 1jdv d1jdvc_ C:22-34,33-43,44-53,54-62,215-236 1jdv d1jdvf_ F:22-34,33-43,44-53,54-62,215-236 1tgv d1tgvb1 B:27-39,38-48,49-58,59-68,234-253 1odl d1odld_ D:22-34,34-44,45-54,55-63,213-235 1odl d1odlb_ B:22-34,34-44,45-54,55-63,213-235 2q7o d2q7oe1 E:35-43,42-50,66-74,75-83,267-283 1rr6 d1rr6a1 A:32-43,42-50,66-74,75-83,267-283 1t8r d1t8re_ E:206-224,229-234,260-268,270-278,442-467 1odk d1odkd_ D:22-34,34-44,45-54,55-63,213-235 1odj d1odjc_ C:22-34,34-44,45-54,55-63,213-235 1odl d1odlc_ C:22-34,34-44,45-54,55-63,213-235 1vhj d1vhje_ E:22-35,34-44,45-54,55-63,217-238 1pr1 d1pr1c_ C:21-33,33-43,44-53,54-62,218-237 1t8w d1t8wc_ C:206-224,229-234,260-268,270-278,442-467 1jys d1jysb_ B:9-20,20-29,30-39,40-48,206-230 1t8w d1t8wa_ A:206-224,229-234,260-268,270-278,442-467 1t8r d1t8rd_ D:206-224,229-234,260-268,270-278,442-467 1odj d1odjd_ D:22-34,34-44,45-54,55-63,213-235 1t8w d1t8wd_ D:206-224,229-234,260-268,270-278,442-467 1t8r d1t8rf_ F:206-224,229-234,260-268,270-278,442-467 1t8r d1t8rb_ B:206-224,229-234,260-268,270-278,442-467 1t8r d1t8ra_ A:206-224,229-234,260-268,270-278,442-467 1t8y d1t8ya_ A:206-224,229-234,260-268,270-278,442-467 1t8y d1t8ye_ E:206-224,229-234,260-268,270-278,442-467 1lv8 d1lv8d_ D:32-43,42-50,66-74,75-83,266-283 1t8w d1t8we_ E:206-224,229-234,260-268,270-278,442-467 1jdu d1jdua_ A:22-34,33-43,44-53,54-62,215-236 1t8y d1t8yc_ C:206-224,229-234,260-268,270-278,442-467 1odi d1odib_ B:22-34,34-44,45-54,55-63,213-235 1jpv d1jpvb_ B:22-34,33-43,44-53,54-62,215-236 1t8y d1t8yb_ B:206-224,229-234,260-268,270-278,442-467 1odi d1odid_ D:22-34,34-44,45-54,55-63,213-235 1odi d1odie_ E:22-34,34-44,45-54,55-63,213-235 2bsx d2bsxa1 A:24-35,36-45,46-55,56-65,221-245 1t8w d1t8wb_ B:206-224,229-234,260-268,270-278,442-467 1je1 d1je1a_ A:22-34,33-43,44-53,54-62,215-236 1t8r d1t8rc_ C:206-224,229-234,260-268,270-278,442-467 1rxc d1rxck_ K:27-39,38-48,49-58,59-68,239-253 1je1 d1je1e_ E:22-34,33-43,44-53,54-62,215-236 1t8w d1t8wf_ F:206-224,229-234,260-268,270-278,442-467 1odl d1odle_ E:22-34,34-44,45-54,55-63,213-235 1odk d1odka_ A:22-34,34-44,45-54,55-63,213-235 1xe3 d1xe3b_ B:21-33,33-43,44-53,54-62,213-233 1odi d1odic_ C:22-34,34-44,45-54,55-63,213-235 1t8y d1t8yd_ D:206-224,229-234,260-268,270-278,442-467 1lv8 d1lv8c_ C:2032-2043,2042-2050,2066-2074,2075-2083,2264-2283 1lx7 d1lx7b_ B:27-39,38-48,49-58,59-68,233-253 1odl d1odlf_ F:22-34,34-44,45-54,55-63,213-235 1je1 d1je1d_ D:22-34,33-43,44-53,54-62,215-236 1t8y d1t8yf_ F:206-224,229-234,260-268,270-278,442-467 1odk d1odkf_ F:22-34,34-44,45-54,55-63,213-235 1vhj d1vhjc_ C:22-34,34-44,45-54,55-63,217-238 1vhj d1vhjd_ D:22-34,34-44,45-54,55-63,217-238 1t0u d1t0ua_ A:27-39,38-48,49-58,59-68,233-253 1xe3 d1xe3c_ C:21-33,33-43,44-53,54-62,217-233 1jpv d1jpva_ A:22-34,33-43,44-53,54-62,215-236 1ryz d1ryzc_ C:27-39,38-48,49-58,59-67,230-253 1xe3 d1xe3f_ F:21-33,33-43,44-53,54-62,217-233 1u1f d1u1fa1 A:27-39,38-48,49-58,59-68,233-253 1jys d1jysa_ A:9-20,20-29,30-39,40-48,206-230 1k3f d1k3fe_ E:4027-4039,4038-4048,4049-4058,4059-4068,4232-4253 1jdu d1jdub_ B:22-34,33-43,44-53,54-62,215-236 1rxc d1rxcc_ C:27-39,38-48,49-58,59-68,234-253 1odi d1odif_ F:22-34,34-44,45-54,55-63,213-235 1lv8 d1lv8e_ E:1032-1043,1042-1050,1066-1074,1075-1083,1266-1283 1yry d1yrye1 E:32-43,42-49,66-74,75-83,265-283 1v41 d1v41e_ E:32-43,42-50,66-74,75-83,263-283 1z5p d1z5pa1 A:9-20,20-29,30-39,40-48,206-232 1k9s d1k9sb_ B:21-34,33-43,44-53,54-62,221-237 1rxc d1rxci_ I:27-39,38-48,49-58,59-68,230-253 1ryz d1ryzb_ B:27-39,38-48,49-58,59-67,230-253 1rxu d1rxur_ R:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuj_ J:27-39,38-48,49-58,59-68,230-253 1rxu d1rxul_ L:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuc_ C:27-39,38-48,49-58,59-68,230-253 1rxu d1rxub_ B:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuk_ K:27-39,38-48,49-58,59-68,230-253 1rxu d1rxui_ I:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuh_ H:27-39,38-48,49-58,59-68,230-253 1k3f d1k3fa_ A:27-39,39-48,49-58,59-68,230-253 1rxu d1rxup_ P:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuf_ F:27-39,38-48,49-58,59-68,230-253 1rxu d1rxue_ E:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuq_ Q:27-39,38-48,49-58,59-68,230-253 1rxu d1rxua_ A:27-39,38-48,49-58,59-68,230-253 1rxu d1rxud_ D:27-39,38-48,49-58,59-68,230-253 1rxu d1rxum_ M:27-39,38-48,49-58,59-68,230-253 1rxu d1rxun_ N:27-39,38-48,49-58,59-68,230-253 1rxu d1rxug_ G:27-39,38-48,49-58,59-68,230-253 1u1f d1u1fb1 B:27-39,38-48,49-58,59-68,230-253 1rxu d1rxuo_ O:27-39,38-48,49-58,59-68,230-253 1u1f d1u1ff1 F:27-39,38-48,49-58,59-67,230-253 1rxc d1rxcf_ F:27-39,38-48,49-58,59-68,230-253 1u1g d1u1ga1 A:27-39,38-48,49-58,59-68,231-253 1u1g d1u1gf1 F:27-39,38-48,49-58,59-67,230-253 1u1g d1u1ge1 E:27-39,38-48,49-58,59-67,230-253 1rxc d1rxcj_ J:27-39,38-48,49-58,59-68,230-253 1rxc d1rxcl_ L:27-39,38-48,49-58,59-68,230-253 1u1c d1u1cb1 B:27-39,38-48,49-58,59-68,230-253 1rxc d1rxcb_ B:27-39,38-48,49-58,59-68,230-253 1k9s d1k9sa_ A:21-33,33-43,44-53,54-62,221-237 1u1e d1u1ee1 E:27-39,38-48,49-58,59-68,230-253 1u1d d1u1db1 B:27-39,38-48,49-58,59-68,230-253 1rxc d1rxcd_ D:27-39,38-48,49-58,59-68,230-253 1u1c d1u1cc1 C:27-39,38-48,49-58,59-68,230-253 1u1e d1u1eb1 B:27-39,38-48,49-58,59-68,230-253 1u1e d1u1ea1 A:27-39,38-48,49-58,59-68,230-253 1u1c d1u1ca1 A:27-39,38-48,49-58,59-68,230-253 1u1g d1u1gd1 D:27-39,38-48,49-58,59-68,230-253 1u1f d1u1fe1 E:27-39,38-48,49-58,59-68,230-253 1k9s d1k9sc_ C:21-33,33-43,44-53,54-62,221-237 1pk9 d1pk9c_ C:21-33,33-43,44-53,54-62,221-237 1u1d d1u1da1 A:27-39,38-48,49-58,59-68,230-253 1u1g d1u1gb1 B:27-39,38-48,49-58,59-68,230-253 1u1f d1u1fd1 D:27-39,38-48,49-58,59-68,230-253 1u1d d1u1dd1 D:27-39,38-48,49-58,59-68,230-253 1u1c d1u1ce1 E:27-39,38-48,49-58,59-68,230-253 1rxc d1rxce_ E:27-39,38-48,49-58,59-68,230-253 1u1e d1u1ec1 C:27-39,38-48,49-58,59-68,230-253 1u1e d1u1ef1 F:27-39,38-48,49-58,59-68,230-253 1k3f d1k3fd_ D:3027-3039,3038-3048,3049-3058,3059-3067,3230-3253 1u1f d1u1fc1 C:27-39,38-48,49-58,59-68,230-253 1u1g d1u1gc1 C:27-39,38-48,49-58,59-68,230-253 1tgv d1tgva1 A:27-39,38-48,49-58,59-68,230-253 1lvu d1lvuf_ F:2032-2043,2042-2050,2066-2074,2075-2083,2266-2282 1ryz d1ryze_ E:27-39,40-48,49-58,59-68,230-253 1u1d d1u1dc1 C:27-39,38-48,49-58,59-68,230-253 1tgy d1tgya1 A:27-39,38-48,49-58,59-68,230-253 1u1d d1u1de1 E:27-39,38-48,49-58,59-68,230-253 1tgy d1tgyb1 B:27-39,38-48,49-58,59-68,230-253 1pke d1pkec_ C:21-33,33-43,44-53,54-62,221-237 1t0u d1t0ub_ B:27-39,38-48,49-58,59-68,230-253 1u1e d1u1ed1 D:27-39,38-48,49-58,59-68,230-253 1k3f d1k3fc_ C:2027-2039,2038-2048,2049-2058,2059-2068,2230-2253 1u1d d1u1df1 F:27-39,38-48,49-58,59-68,230-253 1lv8 d1lv8f_ F:2032-2043,2042-2050,2066-2074,2075-2083,2265-2282 1a69 d1a69a_ A:21-33,33-43,44-53,54-62,221-237 1u1c d1u1cf1 F:27-39,38-48,49-58,59-68,230-253 1rxy d1rxyb_ B:27-39,38-48,49-58,59-68,230-253 1rxy d1rxya_ A:27-39,38-48,49-58,59-68,230-253 1lv8 d1lv8b_ B:1035-1043,1042-1050,1066-1074,1075-1083,1266-1282 1rxc d1rxcg_ G:27-39,38-48,49-58,59-68,231-253 1lx7 d1lx7a_ A:27-39,38-48,49-58,59-68,230-253 1ryz d1ryza_ A:27-39,38-48,49-58,59-67,230-253 1k3f d1k3ff_ F:5027-5039,5040-5048,5049-5058,5059-5068,5230-5253 1ryz d1ryzf_ F:27-39,38-48,49-58,59-67,230-253 1ryz d1ryzd_ D:27-39,38-48,49-58,59-68,230-253 2qpl d2qpla1 A:33-42,42-50,66-74,75-83,262-282 2ac7 d2ac7a1 A:21-33,33-43,44-53,54-62,218-232 2ac7 d2ac7b1 B:21-33,33-43,44-53,54-62,218-232 1xe3 d1xe3a_ A:21-33,33-43,44-53,54-62,213-232 1c3x d1c3xb_ B:48-56,56-63,80-90,92-102,268-282 1qe5 d1qe5b_ B:48-56,56-63,80-90,92-102,268-282 1c3x d1c3xc_ C:48-56,56-63,80-90,92-102,268-282 1c3x d1c3xa_ A:48-56,56-63,80-90,92-102,268-282 1qe5 d1qe5c_ C:45-56,56-63,80-90,92-102,268-282 1qe5 d1qe5a_ A:45-56,56-63,80-90,92-102,268-282 1n3i d1n3ic_ C:36-46,48-54,70-78,79-87,253-268 1g2o d1g2oc_ C:36-46,48-54,70-78,79-87,253-268 1n3i d1n3ia_ A:36-46,48-54,70-78,79-87,253-268 1g2o d1g2oa_ A:36-46,48-54,70-78,79-87,253-268 1g2o d1g2ob_ B:36-46,48-54,70-78,79-87,253-268 1n3i d1n3ib_ B:36-46,48-54,70-78,79-87,253-268 12. d.50.3 YcfA/nrd intein domain dsRBD-like alpha-beta(3)-alpha; 2 layers: alpha/beta 1dq3 d1dq3a2 A:343-355,356-362,363-370,371-378,386-402 2hjj d2hjja1 A:13-25,26-33,36-44,46-54,58-68 1whz d1whza_ A:6-18,19-26,27-34,36-43,49-61 14. d.82.1 Copper amine oxidase, domain N N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet 1dyu d1dyub4 B:9-18,19-26,27-35,36-42,71-82 1qal d1qalb4 B:9-18,19-26,27-35,36-42,71-82 1jrq d1jrqb4 B:9-18,19-26,27-35,36-42,71-82 1qak d1qakb4 B:9-18,19-26,27-35,36-42,71-82 1qaf d1qafb4 B:9-18,19-26,27-35,36-42,71-82 1lvn d1lvnb4 B:9-18,19-26,27-35,36-42,71-82 1lvn d1lvna4 A:9-18,19-26,27-35,36-42,71-82 1dyu d1dyua4 A:9-18,19-26,27-35,36-42,71-82 1d6z d1d6zb4 B:9-18,19-26,27-35,36-42,71-82 1d6z d1d6za4 A:9-18,19-26,27-35,36-42,71-82 1d6u d1d6ub4 B:9-18,19-26,27-35,36-42,71-82 1d6y d1d6ya4 A:9-18,19-26,27-35,36-42,71-82 1oac d1oaca4 A:9-18,19-26,27-35,36-42,71-82 1d6u d1d6ua4 A:9-18,19-26,27-35,36-42,71-82 1qak d1qaka4 A:9-18,19-26,27-35,36-42,71-82 1qal d1qala4 A:9-18,19-26,27-35,36-42,71-82 1jrq d1jrqa4 A:9-18,19-26,27-35,36-42,71-82 1qaf d1qafa4 A:9-18,19-26,27-35,36-42,71-82 1spu d1spua4 A:9-18,19-26,27-35,36-42,71-82 1d6y d1d6yb4 B:9-18,19-26,27-35,36-42,71-82 1oac d1oacb4 B:9-18,19-26,27-35,36-42,71-82 1spu d1spub4 B:9-18,19-26,27-35,36-42,71-81 16. e.47.1 39 kda initiator binding protein, IBP39, C-terminal domains 39 kda initiator binding protein, IBP39, C-terminal domains 2 closely associated domains: (1) all-alpha, EF-hand like; (2) alpha+beta, Frataxin-like 1q87 d1q87b_ B:236-252,272-277,282-289,290-298,318-327 1q87 d1q87a_ A:236-252,272-277,282-289,290-298,318-327 1q89 d1q89a_ A:236-252,272-277,282-289,290-298,318-327 1q88 d1q88a_ A:236-252,271-277,282-289,290-298,318-327 1q88 d1q88b_ B:236-252,270-277,282-289,290-298,318-327 1q89 d1q89a_ A:236-252,290-298,307-311,313-317,318-327 17. d.352.1 FlaG-like FlaG-like alpha(2)-beta(3)-alpha; 2 layers: a/b; antiparallel beta-sheet, order: 123; partial similatity to the dsRBD-like fold(sop_cf 54767) 2hc5 d2hc5a1 A:36-55,57-66,67-77,78-87,86-106 18. d.204.1 Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue) beta-alpha-beta(3)-alpha; 2 layers; mixed sheet 1234, strand 3 is antiparallel to the rest 2ywq d2ywqa1 A:14-29,36-45,53-63,64-74,75-95 2ywq d2ywqc1 C:14-29,36-46,52-63,64-74,75-95 1n3g d1n3ga_ A:13-30,33-45,46-57,58-68,69-91 2ywq d2ywqb1 B:14-33,36-45,53-63,64-74,75-95 2ywq d2ywqd1 D:14-33,36-45,53-63,64-74,75-95 1imu d1imua_ A:13-31,34-45,46-57,58-68,69-91 1l4s d1l4sa_ A:12-27,35-44,45-56,57-67,68-89 19. c.65.1 Formyltransferase Formyltransferase 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest 1z7e d1z7ec3 C:8-23,98-107,126-136,145-152,157-177 1z7e d1z7ef3 F:8-23,98-107,126-136,145-152,157-175 2bln d2blna2 A:8-23,99-107,126-135,142-152,157-177 2bln d2blnb2 B:8-23,98-107,126-135,142-152,157-177 1z7e d1z7ee3 E:8-23,98-107,126-135,142-152,157-177 1z7e d1z7ed3 D:8-23,98-107,126-135,142-152,157-177 1z7e d1z7ea3 A:8-23,98-107,126-135,142-152,157-177 1z7e d1z7eb3 B:8-23,98-107,126-135,142-152,157-177 1yrw d1yrwa2 A:9-23,99-107,126-135,142-152,157-174 1fmt d1fmta2 A:12-26,102-112,132-142,151-158,163-189 1yrw d1yrwa2 A:9-23,99-107,126-135,142-152,173-183 2cfi d2cfia2 A:9-23,98-108,128-137,144-154,167-186 2bw0 d2bw0a2 A:9-23,98-108,128-137,144-154,167-186 1s3i d1s3ia2 A:9-23,98-108,128-137,144-154,167-186 2fmt d2fmta2 A:12-26,102-112,132-142,151-158,171-189 2fmt d2fmtb2 B:12-26,102-112,132-142,151-158,163-175 1fmt d1fmtb2 B:12-26,102-112,132-142,151-158,174-189 1rc1 d1rc1a1 A:11-23,103-110,130-140,149-156,161-187 1fmt d1fmtb2 B:12-26,102-112,132-142,151-158,163-175 1men d1menb_ B:11-23,103-110,130-140,149-156,161-187 2fmt d2fmtb2 B:12-26,102-112,132-142,151-158,174-189 1rc0 d1rc0b1 B:11-23,103-110,130-140,149-156,161-187 1mej d1mejb_ B:11-23,103-110,130-140,149-156,161-187 1mej d1meja_ A:11-23,103-110,130-140,149-156,161-187 1rbz d1rbza1 A:11-23,103-110,130-140,149-156,161-187 1njs d1njsb_ B:11-23,103-110,130-140,149-156,161-187 1mej d1mejc_ C:11-23,103-110,130-140,149-156,161-187 1z7e d1z7ef3 F:8-23,98-107,126-136,145-152,174-183 1rbq d1rbqc1 C:11-23,103-110,130-139,146-156,161-187 1rbm d1rbmb1 B:11-23,103-110,130-139,146-156,161-187 1rc0 d1rc0a1 A:11-23,103-110,130-139,146-156,161-187 1rbq d1rbqb1 B:11-24,103-110,130-140,149-156,161-187 1rbm d1rbma1 A:11-24,103-110,130-140,149-156,161-187 1njs d1njsa_ A:11-24,103-110,130-140,149-156,161-187 1rby d1rbyd1 D:11-24,103-110,130-140,149-156,161-187 1rbq d1rbqa1 A:11-24,103-110,130-140,149-156,161-187 1rby d1rbya1 A:11-24,103-110,130-140,149-156,161-187 1rby d1rbyb1 B:11-24,103-110,130-140,149-156,161-187 1zly d1zlya1 A:11-24,103-110,130-140,149-156,161-187 1rbz d1rbzb1 B:11-23,103-110,130-139,146-156,175-187 1men d1mena_ A:11-24,103-110,130-140,149-156,161-187 1rbq d1rbqd1 D:11-24,103-110,130-140,149-156,161-187 1rc1 d1rc1b1 B:11-24,103-110,130-140,149-156,161-187 1men d1menc_ C:11-24,103-110,130-140,149-156,161-187 1rby d1rbyc1 C:11-24,103-110,130-139,146-156,161-187 1zlx d1zlxa1 A:11-24,103-110,130-139,146-156,161-187 1rbz d1rbzb1 B:11-23,103-110,130-139,146-156,161-176 21. d.82.2 Frataxin/Nqo15-like N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet 1soy d1soya_ A:1-25,29-36,37-44,46-54,86-100 1ekg d1ekga_ A:91-116,122-128,130-138,139-150,181-195 2fql d2fqla1 A:75-96,99-106,107-114,116-124,157-172 2p1x d2p1xa1 A:1-24,29-36,37-44,46-56,86-100 1ew4 d1ew4a_ A:2-24,29-36,37-44,46-56,86-100 2eff d2effa1 A:1-24,29-36,37-44,46-56,86-100 2fug d2fugq1 Q:3-28,29-35,55-62,64-73,111-127 2fug d2fugz1 Z:3-28,29-35,55-62,64-73,111-127 2fug d2fugh1 H:3-28,29-35,55-62,64-73,111-127 2fug d2fug71 7:3-28,29-35,55-62,64-73,111-127 2p1x d2p1xa1 A:1-24,46-56,57-65,66-75,86-100 2eff d2effa1 A:1-24,46-56,57-65,66-75,86-100 1ew4 d1ew4a_ A:2-24,46-56,57-65,66-75,86-100 1soy d1soya_ A:1-25,46-54,59-65,66-75,86-100 2ga5 d2ga5a1 A:18-45,48-55,56-63,65-72,106-123 1ly7 d1ly7a_ A:90-117,121-129,130-138,141-150,181-195 2fug d2fugh1 H:3-28,64-73,81-87,91-98,111-127 2fug d2fugq1 Q:3-28,64-73,81-87,91-98,111-127 2fug d2fugz1 Z:3-28,64-73,81-87,91-98,111-127 2fug d2fug71 7:3-28,64-73,81-87,91-98,111-127 1ekg d1ekga_ A:91-116,139-150,151-159,161-170,181-195 2fql d2fqla1 A:75-96,116-124,129-135,137-146,157-172 1ly7 d1ly7a_ A:90-117,141-150,151-159,161-170,181-195 2ga5 d2ga5a1 A:18-45,65-72,78-84,87-95,106-123 22. d.198.1 Type III secretory system chaperone-like Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta 2plg d2plgb1 B:23-36,58-66,72-83,113-123,127-154 2plg d2plga1 A:23-36,58-66,72-83,113-123,127-154 1l2w d1l2wb_ B:3-16,33-42,44-52,84-95,99-118 1l2w d1l2we_ E:3-16,33-42,44-52,84-95,99-118 1l2w d1l2wc_ C:3-16,33-42,44-52,84-95,99-118 1l2w d1l2wh_ H:3-16,33-42,44-52,84-95,99-118 1n5b d1n5ba_ A:3-16,33-42,44-52,84-95,99-119 1n5b d1n5bd_ D:3-16,33-42,44-52,85-95,99-118 1n5b d1n5bc_ C:3-16,33-42,44-52,84-95,99-118 1xkp d1xkpb1 B:2-16,34-43,44-54,88-98,102-122 1k6z d1k6zb_ B:2003-2016,2033-2042,2044-2052,2084-2095,2099-2117 1k6z d1k6za_ A:1003-1016,1033-1042,1044-1052,1084-1095,1099-1118 1jya d1jyaa_ A:3-16,33-42,44-52,84-95,99-118 1n5b d1n5bb_ B:3-16,33-42,44-52,84-95,99-119 1s28 d1s28b_ B:1-19,40-48,50-59,93-103,107-130 1s28 d1s28d_ D:1-19,40-48,50-60,93-103,107-130 1xkp d1xkpc1 C:2-13,31-40,41-49,89-99,103-126 1s28 d1s28c_ C:1-19,40-48,50-60,93-103,107-130 1s28 d1s28a_ A:1-19,40-48,50-60,93-103,107-130 1k3s d1k3sa_ A:3-13,28-37,38-49,77-87,90-113 1k3s d1k3sb_ B:3-13,28-37,38-49,77-87,90-110 2plg d2plgb1 B:23-36,41-47,48-57,58-66,127-154 2plg d2plga1 A:23-36,41-47,48-57,58-66,127-154 2fm8 d2fm8a1 A:5-18,41-49,50-59,96-105,111-134 1jya d1jyab_ B:3-16,33-42,44-52,85-95,99-122 1ry9 d1ry9a_ A:2-18,41-49,50-60,96-105,111-133 1ry9 d1ry9b_ B:2-18,41-49,50-60,96-105,111-133 1ry9 d1ry9c_ C:2-18,41-49,50-60,96-105,111-133 1ry9 d1ry9d_ D:2-18,41-49,50-60,96-105,111-133 1l2w d1l2wg_ G:1-16,33-42,44-52,84-95,102-118 1l2w d1l2wd_ D:0-16,33-42,44-52,84-95,102-120 1l2w d1l2wf_ F:1-16,33-42,44-52,84-95,102-118 1l2w d1l2wa_ A:0-16,33-42,44-52,84-95,102-120 23. c.51.3 B12-dependent dehydatase associated subunit Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 2d0o d2d0od1 D:22-33,60-66,68-75,82-88,91-108 1nbw d1nbwd_ D:18-33,61-68,70-77,85-90,93-110 1nbw d1nbwb_ B:18-33,61-68,70-77,85-90,93-110 2d0p d2d0pd1 D:22-33,60-66,68-75,82-88,91-108 2d0o d2d0ob1 B:22-33,60-66,68-75,82-88,91-108 2d0p d2d0pb1 B:22-33,60-66,68-75,82-88,91-108 1eex d1eexe_ E:83-99,127-134,136-143,150-155,161-178 1iwp d1iwpb_ B:50-66,94-101,103-110,117-122,128-145 1egv d1egve_ E:83-99,127-134,136-143,150-155,161-178 1uc5 d1uc5e_ E:83-99,127-134,136-143,150-155,161-178 1eex d1eexb_ B:83-99,127-134,136-143,150-155,161-178 1iwb d1iwbb_ B:83-99,127-134,136-143,150-155,161-178 1uc4 d1uc4b_ B:83-99,127-134,136-143,150-155,161-178 1egm d1egmb_ B:83-99,127-134,136-143,150-155,161-178 1uc5 d1uc5b_ B:83-99,127-134,136-143,150-155,161-178 1dio d1dioe_ E:83-99,127-134,136-143,150-155,161-178 1egv d1egvb_ B:83-99,127-134,136-143,150-155,161-178 1uc4 d1uc4e_ E:83-99,127-134,136-143,150-155,161-178 1dio d1diob_ B:83-99,127-134,136-143,150-155,161-178 1iwb d1iwbe_ E:83-99,127-134,136-143,150-154,161-178 1egm d1egme_ E:83-99,127-134,136-143,150-155,161-178 1mmf d1mmfe_ E:50-66,94-101,103-110,117-122,128-145 1iwp d1iwpe_ E:50-66,94-101,103-110,117-122,128-145 1mmf d1mmfb_ B:50-66,94-101,103-110,117-122,128-145 25. d.193.1 Hsp33 domain Hsp33 domain 3 layers: beta/alpha/beta; buried helix 1vq0 d1vq0a1 A:33-54,58-68,109-119,124-131,135-149 1vq0 d1vq0b1 B:33-54,58-68,109-119,124-131,135-149 1i7f d1i7fa_ A:40-61,64-74,111-122,126-133,137-151 1vzy d1vzya1 A:35-57,60-69,113-123,125-133,138-152 1vzy d1vzyb1 B:35-57,60-69,113-123,125-133,138-152 1hw7 d1hw7a_ A:40-61,64-75,110-122,125-133,137-151 26. c.74.1 AraD/HMP-PK domain-like AraD/HMP-PK domain-like 3 layers: a/b/a; mixed (mostly antiparallel) beta-sheet of 9 strands, order 432159876; left-handed crossover between strands 4 and 5 2pb9 d2pb9b1 B:268-287,298-303,357-364,428-438,439-451 2pb9 d2pb9a1 A:268-287,298-303,357-364,428-438,439-451 1ojr d1ojra_ A:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7e_ E:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7m_ M:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7s_ S:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7q_ Q:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7c_ C:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7a_ A:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7d_ D:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7p_ P:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7l_ L:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7n_ N:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7b_ B:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7k_ K:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7o_ O:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7j_ J:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7h_ H:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7i_ I:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7r_ R:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7t_ T:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7f_ F:7-24,30-37,137-143,212-219,220-245 1gt7 d1gt7g_ G:7-24,30-37,137-143,212-219,220-245 2php d2phpa1 A:243-262,272-277,330-336,391-401,402-421 2php d2phpe1 E:243-262,272-277,330-336,391-401,402-423 2php d2phpb1 B:243-262,272-277,330-336,391-401,402-423 1dzy d1dzyp_ P:2-21,27-35,88-94,155-162,163-189 1dzv d1dzvp_ P:2-21,27-35,88-94,155-162,163-189 1fua d1fuaa_ A:2-21,27-35,88-94,155-162,163-189 1dzz d1dzzp_ P:2-21,27-35,88-94,155-162,163-189 1e4c d1e4cp_ P:2-21,27-35,88-94,155-162,163-189 1dzx d1dzxp_ P:2-21,27-35,88-94,155-162,163-189 1e48 d1e48p_ P:2-21,27-35,88-94,155-162,163-189 1dzw d1dzwp_ P:2-21,27-35,88-94,155-162,163-189 2fua d2fuaa_ A:2-21,27-35,88-94,155-162,163-189 4fua d4fuaa_ A:2-21,27-35,88-94,155-162,163-189 1e46 d1e46p_ P:2-21,27-35,88-94,155-162,163-189 1e47 d1e47p_ P:2-21,27-35,88-94,155-162,163-189 1e4b d1e4bp_ P:2-21,27-35,88-94,155-162,163-189 2php d2phpd1 D:238-262,272-277,330-336,391-401,402-421 1dzu d1dzup_ P:2-21,27-35,88-94,155-162,163-189 1e49 d1e49p_ P:2-21,27-35,88-94,155-162,163-189 1e4a d1e4ap_ P:2-21,28-35,88-94,155-162,163-189 3fua d3fuaa_ A:2-21,28-35,88-94,155-162,163-189 1k0w d1k0wd_ D:2-20,27-34,91-97,171-178,179-205 1jdi d1jdie_ E:2-20,27-33,91-97,171-178,179-205 1jdi d1jdid_ D:2-20,27-33,91-97,171-178,179-205 1k0w d1k0we_ E:2-20,27-33,91-97,171-178,179-205 1jdi d1jdic_ C:2-20,27-34,91-97,171-178,179-205 1jdi d1jdif_ F:2-20,27-34,91-97,171-178,179-205 1jdi d1jdia_ A:2-20,27-33,91-97,171-178,179-205 1jdi d1jdib_ B:2-20,27-33,91-97,171-178,179-205 1k0w d1k0wc_ C:2-20,27-34,91-97,171-178,179-205 1k0w d1k0wf_ F:2-20,27-34,91-97,171-178,179-205 1k0w d1k0wb_ B:2-20,27-34,91-97,171-178,179-205 1k0w d1k0wa_ A:2-20,27-33,91-97,171-178,179-205 27. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 2czr d2czra1 A:6-20,21-28,29-37,38-47,85-101 28. d.128.1 Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats 1f52 d1f52l2 L:103-119,122-131,266-277,355-363,366-385 1f52 d1f52e2 E:103-119,122-131,266-277,355-363,366-385 1f52 d1f52k2 K:103-119,122-131,266-277,355-363,366-385 1f52 d1f52d2 D:103-119,122-131,266-277,355-363,366-385 1f52 d1f52g2 G:103-119,122-131,266-277,355-363,366-385 1f52 d1f52c2 C:103-119,122-131,266-277,355-363,366-385 1f52 d1f52f2 F:103-119,122-131,266-277,355-363,366-385 1f52 d1f52j2 J:103-119,122-131,266-277,355-363,366-385 1f52 d1f52i2 I:103-119,122-131,266-277,355-363,366-385 1f52 d1f52a2 A:103-119,122-131,266-277,355-363,366-385 1f52 d1f52h2 H:103-119,122-131,266-277,355-363,366-385 1f52 d1f52b2 B:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyf2 F:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyj2 J:103-119,122-131,266-277,355-363,366-385 1fpy d1fpya2 A:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyh2 H:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyd2 D:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyk2 K:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyg2 G:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyb2 B:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyi2 I:103-119,122-131,266-277,355-363,366-385 1fpy d1fpye2 E:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyc2 C:103-119,122-131,266-277,355-363,366-385 1fpy d1fpyl2 L:103-119,122-131,266-277,355-363,366-385 2gls d2glsh2 H:103-119,122-131,267-277,355-362,366-385 2gls d2glsc2 C:103-119,122-131,267-277,355-362,366-385 2gls d2glsg2 G:103-119,122-131,267-277,355-362,366-385 2gls d2glsl2 L:103-119,122-131,267-277,355-362,366-385 2gls d2glsd2 D:103-119,122-131,267-277,355-362,366-385 2gls d2glsj2 J:103-119,122-131,267-277,355-362,366-385 2gls d2glsb2 B:103-119,122-131,267-277,355-362,366-385 2gls d2glsa2 A:103-119,122-131,267-277,355-362,366-385 2gls d2glsk2 K:103-119,122-131,267-277,355-362,366-385 2gls d2glsi2 I:103-119,122-131,267-277,355-362,366-385 2gls d2glsf2 F:103-119,122-131,267-277,355-362,366-385 2gls d2glse2 E:103-119,122-131,267-277,355-362,366-385 1f1h d1f1hh2 H:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hf2 F:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hc2 C:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hd2 D:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hi2 I:103-119,122-131,267-277,355-359,366-385 1f1h d1f1ha2 A:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hg2 G:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hk2 K:103-119,122-131,267-277,355-359,366-385 1f1h d1f1he2 E:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hl2 L:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hb2 B:103-119,122-131,267-277,355-359,366-385 1f1h d1f1hj2 J:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsk2 K:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsc2 C:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsf2 F:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsd2 D:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsh2 H:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsj2 J:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsl2 L:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsa2 A:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsi2 I:103-119,122-131,267-277,355-359,366-385 2lgs d2lgse2 E:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsb2 B:103-119,122-131,267-277,355-359,366-385 2lgs d2lgsg2 G:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrj2 J:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrk2 K:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrg2 G:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrf2 F:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrd2 D:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrb2 B:103-119,122-131,267-277,355-359,366-385 1lgr d1lgra2 A:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrl2 L:103-119,122-131,267-277,355-359,366-385 1lgr d1lgri2 I:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrh2 H:103-119,122-131,267-277,355-359,366-385 1lgr d1lgre2 E:103-119,122-131,267-277,355-359,366-385 1lgr d1lgrc2 C:103-119,122-131,267-277,355-359,366-385 1htq d1htqb2 B:103-119,122-131,267-277,355-359,366-385 1htq d1htqw2 W:103-119,122-131,267-277,355-359,366-385 1htq d1htqc2 C:103-119,122-131,267-277,355-359,366-385 1htq d1htqr2 R:103-119,122-131,267-277,355-359,366-385 1htq d1htqp2 P:103-119,122-131,267-277,355-359,366-385 1htq d1htqu2 U:103-119,122-131,267-277,355-359,366-385 1htq d1htqs2 S:103-119,122-131,267-277,355-359,366-385 1htq d1htqh2 H:103-119,122-131,267-277,355-359,366-385 1htq d1htql2 L:103-119,122-131,267-277,355-359,366-385 1htq d1htqm2 M:103-119,122-131,267-277,355-359,366-385 1htq d1htqj2 J:103-119,122-131,267-277,355-359,366-385 1htq d1htqi2 I:103-119,122-131,267-277,355-359,366-385 1htq d1htqd2 D:103-119,122-131,267-277,355-359,366-385 1htq d1htqk2 K:103-119,122-131,267-277,355-359,366-385 1htq d1htqo2 O:103-119,122-131,267-277,355-359,366-385 1htq d1htqn2 N:103-119,122-131,267-277,355-359,366-385 1htq d1htqf2 F:103-119,122-131,267-277,355-359,366-385 1htq d1htqa2 A:103-119,122-131,267-277,355-359,366-385 1htq d1htqv2 V:103-119,122-131,267-277,355-359,366-385 1htq d1htqg2 G:103-119,122-131,267-277,355-359,366-385 1htq d1htqt2 T:103-119,122-131,267-277,355-359,366-385 1htq d1htqq2 Q:103-119,122-131,267-277,355-359,366-385 1htq d1htqe2 E:103-119,122-131,267-277,355-359,366-385 1htq d1htqx2 X:103-119,122-131,267-277,355-359,366-385 1hto d1htol2 L:103-119,122-131,267-277,355-359,366-385 1hto d1htox2 X:103-119,122-131,267-277,355-359,366-385 1hto d1htob2 B:103-119,122-131,267-277,355-359,366-385 1hto d1htoa2 A:103-119,122-131,267-277,355-359,366-385 1hto d1htoc2 C:103-119,122-131,267-277,355-359,366-385 1hto d1htoe2 E:103-119,122-131,267-277,355-359,366-385 1hto d1htoo2 O:103-119,122-131,267-277,355-359,366-385 1hto d1htos2 S:103-119,122-131,267-277,355-359,366-385 1hto d1htor2 R:103-119,122-131,267-277,355-359,366-385 1hto d1htoh2 H:103-119,122-131,267-277,355-359,366-385 1hto d1hton2 N:103-119,122-131,267-277,355-359,366-385 1hto d1htot2 T:103-119,122-131,267-277,355-359,366-385 1hto d1htok2 K:103-119,122-131,267-277,355-359,366-385 1hto d1htow2 W:103-119,122-131,267-277,355-359,366-385 1hto d1htou2 U:103-119,122-131,267-277,355-359,366-385 1hto d1htog2 G:103-119,122-131,267-277,355-359,366-385 1hto d1htof2 F:103-119,122-131,267-277,355-359,366-385 1hto d1htoj2 J:103-119,122-131,267-277,355-359,366-385 1hto d1htom2 M:103-119,122-131,267-277,355-359,366-385 1hto d1htoi2 I:103-119,122-131,267-277,355-359,366-385 1hto d1htov2 V:103-119,122-131,267-277,355-359,366-385 1hto d1htoq2 Q:103-119,122-131,267-277,355-359,366-385 1hto d1htop2 P:103-119,122-131,267-277,355-359,366-385 1hto d1htod2 D:103-119,122-131,267-277,355-359,366-385 2bvc d2bvcc2 C:107-123,126-135,274-284,364-368,375-394 2bvc d2bvcd2 D:107-123,126-135,274-284,364-368,375-394 2bvc d2bvce2 E:107-123,126-135,274-284,364-368,375-394 2bvc d2bvcf2 F:107-123,126-135,274-284,364-368,375-394 2bvc d2bvcb2 B:107-123,126-135,274-284,364-368,375-394 2bvc d2bvca2 A:107-123,126-135,274-284,364-368,375-394 31. c.51.2 TolB, N-terminal domain Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1crz d1crza2 A:32-45,76-87,89-100,104-116,116-137 2ivz d2ivzd2 D:54-67,98-109,111-122,126-138,138-159 2hqs d2hqsd2 D:54-67,98-109,111-122,126-138,138-159 2ivz d2ivzb2 B:54-67,98-109,111-122,126-138,138-159 2hqs d2hqsb2 B:54-67,98-109,111-122,126-138,138-159 2hqs d2hqsf2 F:54-67,98-109,111-122,126-138,138-159 2hqs d2hqsa2 A:54-67,98-109,111-122,126-138,138-159 2ivz d2ivzc2 C:54-67,98-109,111-122,126-138,138-159 2ivz d2ivza2 A:54-67,98-109,111-122,126-138,138-159 1c5k d1c5ka2 A:54-67,98-109,111-123,126-138,138-159 32. d.198.5 YgaC/TfoX-N like overall similar to the Type III secretory system chaperone subunits; different shape of the beta-sheet Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta 2g7j d2g7ja1 A:4-16,17-23,25-32,33-40,98-112 2od0 d2od0b1 B:4-17,18-25,26-33,34-42,88-104 2od0 d2od0a1 A:4-17,19-25,26-33,34-42,88-105 2od0 d2od0b1 B:4-17,34-42,43-49,77-81,88-104 2od0 d2od0a1 A:4-17,34-42,43-49,77-81,88-105 33. d.296.1 YktB/PF0168-like YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634) 2a8e d2a8ea1 A:29-42,53-58,70-77,86-94,184-200 2a8e d2a8ea1 A:29-42,86-94,95-101,167-176,184-200 2a8e d2a8ea1 A:41-50,53-58,70-77,86-94,184-200 2a8e d2a8ea1 A:41-50,86-94,95-101,167-176,184-200 1yb3 d1yb3a1 A:2-29,65-72,73-83,135-144,146-165 1yb3 d1yb3a1 A:2-29,32-41,55-63,65-72,146-165 34. c.51.5 CinA-like Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 2a9s d2a9sb1 B:35-45,99-107,120-129,131-140,144-165 2a9s d2a9sa1 A:35-45,99-107,120-129,131-140,144-167 35. d.134.1 Nitrite and sulphite reductase 4Fe-4S domain-like duplication: contains two domains of this fold ! Nitrite and sulphite reductase 4Fe-4S domain-like beta-alpha-beta-alpha-beta(3)-alpha(2,3); mixed sheet: order 12345; left-handed crossover connection between strands 1 and 2 5aop d5aopa4 A:450-466,490-496,500-508,513-523,523-542 7gep d7gepa4 A:450-466,490-496,500-508,513-523,523-542 3geo d3geoa4 A:447-466,490-496,500-507,516-523,523-542 8gep d8gepa4 A:450-466,490-496,500-507,516-523,523-542 2v4j d2v4je3 E:157-170,200-208,278-288,300-307,313-331 2v4j d2v4jb3 B:157-170,200-208,278-288,300-307,313-331 2aop d2aopa4 A:450-466,490-496,500-507,516-523,523-542 6gep d6gepa4 A:450-466,490-496,500-507,516-523,523-542 4gep d4gepa4 A:450-466,490-496,500-507,516-523,523-542 5gep d5gepa4 A:450-466,490-496,500-507,516-523,523-542 3aop d3aopa4 A:450-466,490-496,500-507,516-523,523-542 4aop d4aopa4 A:450-466,490-496,500-507,516-523,523-542 1aop d1aopa4 A:450-466,490-496,500-507,516-523,523-542 2gep d2gepa4 A:450-466,490-496,500-507,516-523,523-542 5aop d5aopa3 A:163-182,234-243,244-255,268-279,278-297 4gep d4gepa3 A:163-182,234-243,244-255,268-279,278-297 1aop d1aopa3 A:163-182,234-243,244-255,268-279,278-297 8gep d8gepa3 A:163-182,234-243,244-255,268-279,278-297 5gep d5gepa3 A:163-183,234-243,244-260,266-279,278-297 2v4j d2v4jd3 D:189-202,233-242,321-335,337-350,355-373 2akj d2akja3 A:453-470,493-504,506-517,528-536,535-552 2v4j d2v4ja3 A:189-202,233-242,321-335,337-350,355-373 7gep d7gepa3 A:163-182,234-243,244-260,266-279,278-297 2aop d2aopa3 A:163-182,234-243,244-260,266-279,278-297 2gep d2gepa3 A:163-182,234-243,244-260,266-279,278-297 3aop d3aopa3 A:163-182,234-243,244-260,266-279,278-297 6gep d6gepa3 A:163-182,234-243,244-260,266-279,278-297 3geo d3geoa3 A:163-182,234-243,244-260,266-279,278-297 4aop d4aopa3 A:163-182,234-243,244-260,266-279,278-297 36. d.270.1 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain duplication: consists of two beta(3)-alpha repeats; 3 layers, beta/alpha/beta 1sr9 d1sr9b3 B:533-546,546-560,565-578,615-625,626-643 1sr9 d1sr9a3 A:533-546,547-560,565-577,615-625,626-643 39. c.51.4 ITPase-like formerly Maf/Ham1; elaborated with additional structures inserted in the common fold ! Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1u14 d1u14a_ A:10-26,70-81,82-93,94-106,149-167 1zwy d1zwyd1 D:19-35,79-90,91-102,103-115,158-177 1zwy d1zwya1 A:19-35,79-90,91-102,103-115,158-177 1zno d1znob1 B:19-35,79-90,91-102,103-115,158-177 1zwy d1zwyc1 C:19-35,79-90,91-102,103-115,158-177 1zwy d1zwyb1 B:19-35,79-90,91-102,103-115,158-177 1u5w d1u5wd1 D:13-29,73-84,85-96,97-109,152-171 1zno d1znoa1 A:19-35,79-90,91-102,103-115,158-177 1u5w d1u5wb1 B:13-29,73-84,85-96,97-109,152-171 1u5w d1u5we1 E:13-29,73-84,85-96,97-109,152-171 1u5w d1u5wa1 A:13-29,73-84,85-96,97-109,152-171 1u5w d1u5wg1 G:13-29,73-84,85-96,97-109,152-171 1u5w d1u5wh1 H:13-29,73-84,85-96,97-109,152-171 1u5w d1u5wc1 C:13-29,73-84,85-96,97-109,152-171 1u5w d1u5wf1 F:13-29,73-84,85-96,97-109,152-171 1k7k d1k7ka_ A:10-25,63-75,114-127,133-145,181-197 1vp2 d1vp2b_ B:12-23,62-74,109-123,124-139,174-191 2dvo d2dvoa1 A:9-24,60-71,103-116,117-131,167-185 2dvp d2dvpa1 A:9-24,60-71,103-116,117-131,167-184 2zti d2ztia1 A:9-24,60-71,103-116,117-131,167-184 1vp2 d1vp2a_ A:12-23,62-74,109-123,124-139,174-191 2dvn d2dvna1 A:9-24,60-71,103-116,117-131,167-184 1v7r d1v7ra_ A:9-24,60-71,103-116,117-131,167-185 2dvn d2dvnb1 B:9-24,60-71,103-116,117-131,167-184 2j4e d2j4eg1 G:16-28,67-78,110-122,129-143,176-190 2j4e d2j4eh1 H:16-28,67-78,110-122,129-141,176-190 2j4e d2j4ee1 E:16-28,66-78,110-123,129-141,176-189 2j4e d2j4ea1 A:16-28,67-78,110-122,129-141,176-190 1ex2 d1ex2b_ B:11-22,64-76,97-112,113-128,174-185 1ex2 d1ex2a_ A:11-22,64-76,97-112,113-128,174-185 1exc d1excb_ B:11-22,64-76,98-112,113-128,174-185 1exc d1exca_ A:11-22,64-76,98-112,113-128,174-185 1b78 d1b78b_ B:17-29,68-79,111-124,125-139,176-193 2mjp d2mjpb_ B:17-29,68-79,111-124,125-139,176-193 1b78 d1b78a_ A:17-29,68-79,111-124,125-139,176-192 2mjp d2mjpa_ A:17-29,68-79,111-124,125-139,176-192 2amh d2amha1 A:18-30,83-95,116-131,136-150,196-207 2j4e d2j4ef1 F:16-28,66-78,110-123,129-141,176-193 2j4e d2j4eb1 B:16-28,66-78,110-123,129-141,176-193 2j4e d2j4ed1 D:16-28,66-78,110-123,129-141,176-193 2j4e d2j4ec1 C:16-28,66-78,110-123,129-141,176-193 40. d.248.1 Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567 3dwr d3dwrb1 B:1-28,104-116,122-134,182-192,195-224 3dws d3dwsa1 A:1-28,104-117,121-134,182-192,195-224 1tk1 d1tk1a_ A:11-36,128-140,148-159,209-217,220-249 3dwr d3dwra1 A:1-28,104-117,121-134,182-192,195-224 2qt8 d2qt8a1 A:1-28,104-117,121-134,182-192,195-224 1vju d1vjua_ A:9-36,112-125,129-142,190-200,203-232 3dwr d3dwrb1 B:1-28,55-67,86-99,104-116,195-224 1tk1 d1tk1a_ A:11-36,63-79,108-123,128-140,220-249 1tkl d1tkla_ A:11-36,128-142,144-159,207-217,220-249 1tkl d1tklb_ B:11-36,128-142,144-159,207-217,220-249 1txn d1txna_ A:11-36,128-142,144-159,209-217,220-249 1txn d1txnb_ B:11-36,128-142,144-159,209-217,220-249 1tlb d1tlbu_ U:9-36,128-142,144-159,207-217,220-249 3dws d3dwsb1 B:-2-28,104-117,121-134,182-192,195-224 1vju d1vjub_ B:6-36,112-125,129-142,190-200,203-232 2qt8 d2qt8b1 B:-2-28,104-117,121-134,182-192,195-224 3dwr d3dwra1 A:1-28,55-68,86-99,104-117,195-224 3dws d3dwsa1 A:1-28,55-70,83-99,104-117,195-224 1vju d1vjua_ A:9-36,63-78,93-107,112-125,203-232 2qt8 d2qt8a1 A:1-28,55-70,83-99,104-117,195-224 1tlb d1tlba_ A:6-36,128-142,144-159,207-217,220-249 1tlb d1tlbs_ S:6-36,128-142,144-159,207-217,220-249 1tlb d1tlbq_ Q:6-36,128-142,144-159,207-217,220-249 1tlb d1tlbd_ D:6-36,128-142,144-159,207-217,220-249 1tlb d1tlbw_ W:6-36,128-142,144-159,207-217,220-249 3dws d3dwsb1 B:-2-28,55-70,83-99,104-117,195-224 1tlb d1tlbu_ U:9-36,63-78,109-123,128-142,220-249 2qt8 d2qt8b1 B:-2-28,55-70,83-99,104-117,195-224 1vju d1vjub_ B:6-36,63-78,93-107,112-125,203-232 1txn d1txnb_ B:11-36,63-79,108-123,128-142,220-249 1tkl d1tkla_ A:11-36,63-79,108-123,128-142,220-249 1txn d1txna_ A:11-36,63-79,108-123,128-142,220-249 1tkl d1tklb_ B:11-36,63-79,108-123,128-142,220-249 1tlb d1tlbq_ Q:6-36,63-78,109-123,128-142,220-249 1tlb d1tlbd_ D:6-36,63-78,109-123,128-142,220-249 1tlb d1tlbw_ W:6-36,63-77,109-123,128-142,220-249 1tlb d1tlba_ A:6-36,63-78,109-123,128-142,220-249 1tlb d1tlbs_ S:6-36,63-78,108-123,128-142,220-249 48. d.82.4 GAS2 domain-like this superfamily may include the most C-terminal domain of IBP39 ( N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet 1v5r d1v5ra1 A:8-22,30-35,37-42,43-52,66-76 49. d.20.1 UBC-like UBC-like alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2 1uzx d1uzxa_ A:27-43,44-55,57-70,80-87,140-151 1i7k d1i7ka_ A:30-46,49-55,60-68,77-85,127-142 1fzy d1fzya_ A:2-18,21-27,33-41,50-58,101-116 1i7k d1i7kb_ B:30-46,49-55,60-68,77-85,127-142 1yrv d1yrva1 A:3-20,23-29,34-42,51-59,104-119 1fzy d1fzyb_ B:2-18,22-27,33-41,50-58,101-116 2px9 d2px9b1 B:1-20,23-29,39-47,56-64,108-123 1kps d1kpsa_ A:1-20,24-29,39-47,56-64,108-123 1u9a d1u9aa_ A:0-20,24-29,39-47,56-64,108-123 1u9b d1u9ba_ A:0-20,24-29,39-48,54-64,108-123 2aak d2aaka_ A:3-20,23-29,34-42,51-59,101-116 1a3s d1a3sa_ A:1-20,24-29,39-48,54-64,108-123 2f0r d2f0ra1 A:17-33,34-45,51-58,71-76,123-139 1fbv d1fbvc_ C:1004-1018,1021-1027,1033-1040,1051-1057,1100-1115 1zdn d1zdnb1 B:10-27,30-35,41-49,58-66,108-123 1q34 d1q34a_ A:3-20,23-29,34-42,51-59,101-116 1yla d1ylaa2 A:2-19,26-33,37-45,53-62,105-120 1yla d1ylab2 B:2-19,26-33,37-45,53-62,105-120 1q34 d1q34c_ C:3-20,23-29,34-42,51-59,101-116 1q34 d1q34b_ B:3-20,23-29,34-43,49-59,101-116 2f0r d2f0rb1 B:17-33,34-45,51-58,71-76,123-139 1wzv d1wzva1 A:2-17,20-27,32-39,49-56,99-114 1y6l d1y6lb_ B:0-17,20-26,31-39,48-56,98-113 2ayv d2ayva1 A:-1-17,20-26,31-39,48-56,98-113 1jbb d1jbbb_ B:5-19,22-28,33-41,50-58,100-115 1y6l d1y6la_ A:0-17,20-26,31-39,48-56,98-113 1x23 d1x23a1 A:-4-17,20-26,31-39,48-56,98-113 2clw d2clwa1 A:-1-17,20-26,31-39,48-56,98-113 1wzv d1wzvb1 B:2-17,20-27,32-39,49-56,99-114 2o25 d2o25b2 B:3-19,26-32,37-45,54-62,105-120 2esq d2esqa1 A:-1-17,20-26,31-39,48-56,98-113 1zdn d1zdna1 A:9-27,30-35,41-49,58-66,108-123 2eso d2esoa1 A:-1-17,20-26,31-39,48-56,98-113 2esp d2espa1 A:-1-17,20-26,31-39,48-56,98-113 1y6l d1y6lc_ C:0-17,20-26,31-39,48-56,98-113 2c4o d2c4ob1 B:-2-17,20-26,31-39,48-56,98-113 2c4o d2c4od1 D:-2-17,20-26,31-39,48-56,98-113 3e46 d3e46a2 A:2-19,26-33,37-45,53-62,105-120 2c4o d2c4oc1 C:-1-17,20-26,31-39,48-56,98-113 2clw d2clwb1 B:-1-17,20-26,31-39,48-57,98-113 2esk d2eska1 A:-1-17,20-26,31-40,46-56,98-113 1x23 d1x23b1 B:-4-17,20-26,31-39,48-56,98-113 2grn d2grna1 A:2-20,24-29,39-47,56-64,108-123 2bf8 d2bf8a1 A:2-19,26-32,37-45,54-62,105-120 2c4o d2c4oa1 A:-1-17,21-26,31-39,48-56,98-113 1jat d1jata_ A:5-19,22-28,33-41,49-58,100-115 1jbb d1jbba_ A:5-19,22-28,33-41,50-58,100-115 2c2v d2c2vk1 K:9-23,26-32,37-45,54-62,104-119 2c2v d2c2ve1 E:9-23,26-32,37-45,54-62,104-119 2clw d2clwc1 C:-2-17,20-26,31-39,48-56,98-113 1x23 d1x23d1 D:-4-17,20-26,31-39,48-56,98-113 1kps d1kpsc_ C:3-20,24-29,39-47,56-64,108-123 1m4p d1m4pa_ A:17-33,34-45,47-64,65-76,123-139 2clw d2clwd1 D:-2-17,20-26,31-39,48-56,98-113 2bep d2bepa1 A:2-19,26-32,37-45,54-62,105-120 2c2v d2c2vb1 B:9-23,26-32,37-45,54-62,104-119 1kpp d1kppa_ A:17-33,35-45,47-64,65-76,123-139 1j7d d1j7db_ B:5-19,22-28,33-41,50-58,100-115 2c2v d2c2vh1 H:9-23,26-32,37-45,54-62,104-119 2gmi d2gmia1 A:5-19,22-28,33-41,49-58,100-115 1ur6 d1ur6a_ A:1-17,20-27,31-38,50-56,98-113 1yh2 d1yh2a1 A:0-18,21-27,32-40,49-57,103-118 2vrr d2vrra1 A:2-20,24-29,39-47,56-64,108-123 2o25 d2o25a2 A:2-19,26-32,37-45,53-62,105-120 2o25 d2o25d1 D:2-20,24-29,39-47,56-64,108-123 2ucz d2ucza_ A:2-20,23-28,35-43,52-60,115-130 1x23 d1x23c1 C:-4-17,20-26,31-39,48-56,98-113 2awf d2awfa1 A:4-21,24-30,36-44,53-61,116-131 2pe6 d2pe6a1 A:2-20,24-29,39-48,54-64,108-123 1m4q d1m4qa_ A:17-33,34-45,46-64,65-76,123-139 2o25 d2o25c1 C:2-20,24-29,39-47,56-64,108-123 2uyz d2uyza1 A:3-20,24-29,39-47,56-64,108-123 2c2v d2c2vc1 C:39-55,59-65,73-82,88-98,143-157 1zuo d1zuoa1 A:202-219,226-232,237-244,267-274,318-334 1kpq d1kpqa_ A:17-33,34-45,47-64,65-77,123-139 1s1q d1s1qa_ A:17-33,34-45,51-64,65-76,123-139 1s1q d1s1qc_ C:17-33,34-45,51-64,65-76,123-139 2dax d2daxa1 A:7-25,29-33,56-68,70-82,124-141 52. d.82.5 GK1464-like dimer; pseudo barrel; the true dimeric barrel formation requires swapping of the C-ternimal beta-alpha units ! N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet 1ylx d1ylxb1 B:5-25,28-37,39-50,51-64,89-100 1ylx d1ylxa1 A:5-25,28-37,39-50,51-64,89-100 54. d.50.2 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain dsRBD-like alpha-beta(3)-alpha; 2 layers: alpha/beta 1gtk d1gtka2 A:221-239,245-254,255-265,270-279,282-298 1pda d1pdaa2 A:221-239,245-254,255-265,270-279,282-298 1ah5 d1ah5a2 A:221-239,245-254,255-265,270-279,282-298 2ypn d2ypna2 A:221-239,245-254,255-265,270-279,282-298 1ypn d1ypna2 A:221-239,245-254,255-265,270-279,282-298 63. d.282.1 SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures 1tlj d1tljb_ B:27-42,43-52,93-109,138-156,162-192 1tlj d1tlja_ A:27-42,43-52,93-109,138-145,162-192 67. c.51.6 XCC0632-like short crossover loop between strands 2 and 3; the antiparallel part of the beta-sheet (strands 3, 4 and 5) and the C-terminal helix are quite long Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 2iqi d2iqid1 D:90-107,122-136,142-156,157-172,176-209 2iqi d2iqia1 A:90-107,122-136,142-156,157-172,176-209 2iqi d2iqih1 H:90-107,122-136,142-156,157-172,176-209 2iqi d2iqif1 F:90-107,122-136,142-156,157-172,176-209 2iqi d2iqic1 C:90-107,122-136,142-156,157-172,176-209 2iqi d2iqie1 E:90-107,122-136,142-156,157-172,176-209 2iqi d2iqib1 B:90-107,122-136,142-156,157-172,176-209 2iqi d2iqig1 G:90-107,122-136,142-156,157-172,176-209 2i9i d2i9ia1 A:97-117,138-152,164-184,185-195,221-253 70. e.43.1 Subunits of heterodimeric actin filament capping protein Capz Subunits of heterodimeric actin filament capping protein Capz 3 domains: (1) protozoan pheromone-like alpha-helical bundle; (2) rubredoxin-like domain lacking metal-binding site; (3) alpha+beta heterodimerisation domain: alpha-beta(5)-alpha 1izn d1izna_ A:115-137,138-149,150-165,168-182,220-260 1izn d1iznc_ C:115-137,138-149,150-165,168-182,220-260 1izn d1iznb_ B:90-113,115-125,126-138,144-159,208-245 1izn d1iznd_ D:90-113,115-125,126-138,144-159,208-245 1izn d1izna_ A:115-137,168-182,184-200,201-218,220-260 1izn d1iznc_ C:115-137,168-182,184-200,201-218,220-260 1izn d1iznb_ B:90-113,144-159,163-181,185-203,208-245 1izn d1iznd_ D:90-113,144-159,163-181,185-203,208-245 71. d.283.1 Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)] 1vpb d1vpba_ A:3-21,22-41,44-62,63-71,74-93 1vl4 d1vl4a_ A:2-18,19-37,38-58,59-67,71-86 1vl4 d1vl4b_ B:2-18,19-37,38-58,59-67,71-86 1vl4 d1vl4a_ A:115-134,135-156,158-178,180-191,197-213 1vl4 d1vl4b_ B:115-134,135-156,158-178,180-191,197-213 1vpb d1vpba_ A:125-141,146-166,168-189,191-203,210-227