| SCOP superfamily ID |
superfamiily description |
corresponding fold description |
| d.277.1 | Bacillus phage protein | Bacillus phage protein alpa-beta(3)-alpha-beta(3)-alpha; 3 layers: b/a/b, 3-helical bundle flanked by two 3-stranded meander beta-sheets |
| d.315.1 | TRCF domain-like | TRCF domain-like beta-alpha(3)-beta(2)-alpha-beta(2)-alpha; 2 layers: alpha/beta; mixed beta sheet, order 12354, strands 1 and 2 are parallel; some topological similarity to the DCoH-like fold (scop_cf 55247) |
| d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA | MotA C-terminal domain-like alpha-beta(4)-alpha-beta(2)-alpha; 2 layers: alpha/beta |
| d.198.3 | YjbR-like overall similar to the Type III secretory system chaperone subunits; different shape of the beta-sheet ! | Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta |
| c.51.1 | Class II aaRS ABD-related | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| d.250.1 | Folate-binding domain some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase ! | Folate-binding domain duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands |
| c.56.2 | Purine and uridine phosphorylases complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8 ! | Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops |
| d.50.3 | YcfA/nrd intein domain | dsRBD-like alpha-beta(3)-alpha; 2 layers: alpha/beta |
| d.82.1 | Copper amine oxidase, domain N | N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet |
| e.47.1 | 39 kda initiator binding protein, IBP39, C-terminal domains | 39 kda initiator binding protein, IBP39, C-terminal domains 2 closely associated domains: (1) all-alpha, EF-hand like; (2) alpha+beta, Frataxin-like |
| d.352.1 | FlaG-like | FlaG-like alpha(2)-beta(3)-alpha; 2 layers: a/b; antiparallel beta-sheet, order: 123; partial similatity to the dsRBD-like fold(sop_cf 54767) |
| d.204.1 | Ribosome binding protein Y (YfiA homologue) | Ribosome binding protein Y (YfiA homologue) beta-alpha-beta(3)-alpha; 2 layers; mixed sheet 1234, strand 3 is antiparallel to the rest |
| c.65.1 | Formyltransferase | Formyltransferase 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest |
| d.82.2 | Frataxin/Nqo15-like | N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet |
| d.198.1 | Type III secretory system chaperone-like | Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta |
| c.51.3 | B12-dependent dehydatase associated subunit | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| d.193.1 | Hsp33 domain | Hsp33 domain 3 layers: beta/alpha/beta; buried helix |
| c.74.1 | AraD/HMP-PK domain-like | AraD/HMP-PK domain-like 3 layers: a/b/a; mixed (mostly antiparallel) beta-sheet of 9 strands, order 432159876; left-handed crossover between strands 4 and 5 |
| c.52.4 | TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger | Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest |
| d.128.1 | Glutamine synthetase/guanido kinase | Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats |
| c.51.2 | TolB, N-terminal domain | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| d.198.5 | YgaC/TfoX-N like overall similar to the Type III secretory system chaperone subunits; different shape of the beta-sheet | Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta |
| d.296.1 | YktB/PF0168-like | YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634) |
| c.51.5 | CinA-like | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| d.134.1 | Nitrite and sulphite reductase 4Fe-4S domain-like duplication: contains two domains of this fold ! | Nitrite and sulphite reductase 4Fe-4S domain-like beta-alpha-beta-alpha-beta(3)-alpha(2,3); mixed sheet: order 12345; left-handed crossover connection between strands 1 and 2 |
| d.270.1 | 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain duplication: consists of two beta(3)-alpha repeats; 3 layers, beta/alpha/beta |
| c.51.4 | ITPase-like formerly Maf/Ham1; elaborated with additional structures inserted in the common fold ! | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| d.248.1 | Coproporphyrinogen III oxidase | Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567 |
| d.82.4 | GAS2 domain-like this superfamily may include the most C-terminal domain of IBP39 ( | N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet |
| d.20.1 | UBC-like | UBC-like alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2 |
| d.82.5 | GK1464-like dimer; pseudo barrel; the true dimeric barrel formation requires swapping of the C-ternimal beta-alpha units ! | N domain of copper amine oxidase-like alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet |
| d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | dsRBD-like alpha-beta(3)-alpha; 2 layers: alpha/beta |
| d.282.1 | SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! | SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures |
| c.51.6 | XCC0632-like short crossover loop between strands 2 and 3; the antiparallel part of the beta-sheet (strands 3, 4 and 5) and the C-terminal helix are quite long | Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest |
| e.43.1 | Subunits of heterodimeric actin filament capping protein Capz | Subunits of heterodimeric actin filament capping protein Capz 3 domains: (1) protozoan pheromone-like alpha-helical bundle; (2) rubredoxin-like domain lacking metal-binding site; (3) alpha+beta heterodimerisation domain: alpha-beta(5)-alpha |
| d.283.1 | Putative modulator of DNA gyrase, PmbA/TldD | Putative modulator of DNA gyrase, PmbA/TldD consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)] |