1. d.2.1 Lysozyme-like
Lysozyme-like common alpha+beta motif for the active site region
1chk d1chka_ A:7-24,122-134,136-151,203-217,223-230
1chk d1chkb_ B:7-24,122-134,136-151,203-217,223-230
2. f.1.5 Exotoxin A, middle domain
Toxins' membrane translocation domains multi-helical domains of various folds which is thought to unfold in the membrane
1ikp d1ikpa3 A:254-266,281-302,307-319,332-355,388-394
3. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1h81 d1h81b1 B:88-95,105-130,139-149,156-167,317-323
1h81 d1h81c1 C:88-95,105-130,139-149,156-167,317-323
1b5q d1b5qb1 B:88-95,105-130,139-149,156-167,317-323
1b37 d1b37b1 B:88-95,105-130,139-149,156-167,317-323
1h86 d1h86c1 C:88-95,105-130,139-149,156-167,317-323
1h83 d1h83b1 B:88-95,105-130,139-149,156-167,317-323
1b37 d1b37c1 C:88-95,105-130,139-149,156-167,317-323
1b5q d1b5qc1 C:88-95,105-130,139-149,156-167,317-323
1h86 d1h86b1 B:88-95,105-130,139-149,156-167,317-323
1h83 d1h83c1 C:88-95,105-130,139-149,156-167,317-323
1h84 d1h84b1 B:88-95,105-130,139-149,156-167,317-323
1h84 d1h84c1 C:88-95,105-130,139-149,156-167,317-323
1h81 d1h81a1 A:88-95,105-130,139-149,156-167,317-323
1h82 d1h82b1 B:88-95,105-130,139-149,156-167,317-323
1h82 d1h82c1 C:88-95,105-130,139-149,156-167,317-323
1b37 d1b37a1 A:88-95,105-130,139-149,156-167,317-323
1h82 d1h82a1 A:88-95,105-130,139-149,156-167,317-323
1b5q d1b5qa1 A:88-95,105-130,139-149,156-168,317-323
1h86 d1h86a1 A:88-95,105-130,139-149,156-167,317-323
4. c.1.19 Cobalamin (vitamin B12)-dependent enzymes
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1iwp d1iwpa_ A:179-196,405-428,470-482,483-500,506-511
1iwb d1iwbl_ L:178-195,404-427,469-481,482-499,505-510
1egm d1egml_ L:178-195,404-427,469-481,482-499,505-510
1mmf d1mmfa_ A:179-196,405-428,470-482,483-500,506-511
1iwp d1iwpl_ L:179-196,405-428,470-482,483-500,506-511
1mmf d1mmfl_ L:179-196,405-428,470-482,483-500,506-511
1uc4 d1uc4l_ L:178-195,404-427,469-481,482-499,505-510
1uc5 d1uc5a_ A:178-195,404-427,469-481,482-499,504-510
1uc4 d1uc4a_ A:178-195,404-427,469-481,482-499,504-510
1uc5 d1uc5l_ L:178-195,404-427,469-481,482-499,504-510
5. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
2zc4 d2zc4b1 B:335-351,408-420,457-471,504-521,568-577
2z2l d2z2lb1 B:336-351,408-420,457-471,504-521,566-577
1k25 d1k25c4 C:2335-2351,2408-2420,2457-2471,2504-2522,2566-2577
1pyy d1pyya4 A:335-351,408-420,457-471,504-522,566-577
2z2m d2z2me1 E:335-351,408-420,457-471,504-521,566-577
2zc3 d2zc3e1 E:335-351,408-420,457-471,504-521,566-577
1qme d1qmea4 A:336-351,408-420,457-471,504-522,566-577
2zc3 d2zc3b1 B:336-351,408-420,457-471,504-522,566-577
1qmf d1qmfa4 A:335-351,408-420,457-471,504-522,566-577
6. e.18.1 HydB/Nqo4-like
HydB/Nqo4-like 3 domains: (1) all-alpha; (2&3) alpha+beta
1e3d d1e3db_ B:95-127,205-221,241-263,413-432,457-468
1e3d d1e3dd_ D:95-127,191-221,241-263,413-432,457-468
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1193 (enumeration index: query138.2246) of S5
3mjq B:25-33,35-42,43-50,52-66,69-78
3mjq A:25-33,35-42,43-50,52-66,69-78
3pbo A:292-308,362-374,414-428,450-467,502-512
3ku9 B:88-95,105-130,139-149,156-167,317-323
3ku9 A:88-95,105-130,139-149,156-168,317-323
3myr B:1085-1118,1180-1210,1235-1257,1425-1444,1475-1486
3pbq A:294-308,362-374,414-428,450-467,502-512
3pbn A:292-308,362-374,414-428,450-467,502-512
3kpf B:88-95,105-130,139-149,156-167,317-323
1z5h A:347-366,366-382,387-400,402-414,446-454
3pbr A:294-308,362-374,414-428,450-467,502-512
3ocl A:294-308,362-374,414-428,450-467,500-510
3pbt A:294-308,362-374,414-428,450-467,502-512
3oc2 A:294-308,362-374,414-428,450-467,500-510
3eqv A:308-324,375-387,427-441,463-479,513-523
3l1r A:88-95,105-130,139-149,156-167,317-323
3l1r B:88-95,105-130,139-149,156-168,317-323
2q5t A:267-279,295-315,333-351,350-373,408-414
3ocn A:292-308,362-374,414-428,450-467,500-510
3equ A:308-324,375-387,427-441,463-477,514-523
3pbs A:292-308,362-374,414-428,450-467,502-512
3q7j A:347-366,366-382,387-400,402-414,446-454
2c7c G:8-31,88-110,433-449,496-517,516-524
2c7c G:8-31,88-110,112-136,496-517,516-524