1. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
1tg7 d1tg7a4 A:492-501,502-510,555-561,562-569,575-580
1xc6 d1xc6a4 A:492-501,502-510,555-561,562-569,575-580
2. e.69.1 Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301)
Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest
2gaf d2gafd1 D:341-348,355-361,387-393,394-400,402-408
2ga9 d2ga9d1 D:341-348,355-361,387-393,394-400,402-407
3. b.133.1 Dextranase, N-terminal domain
Dextranase, N-terminal domain sandwich; 9 strands in 2 sheets; greek-key
1ogo d1ogox1 X:57-61,97-107,157-165,191-200,408-416
1ogm d1ogmx1 X:57-61,97-107,157-165,191-200,408-416
1ogo d1ogox1 X:57-61,97-107,157-165,191-200,387-395
1ogm d1ogmx1 X:57-61,97-107,157-165,191-200,387-395
1ogo d1ogox1 X:57-61,97-107,157-165,191-200,338-344
1ogm d1ogmx1 X:57-61,97-107,157-165,191-200,338-344
1ogo d1ogox1 X:57-61,97-107,157-165,191-200,293-298
1ogm d1ogmx1 X:57-61,97-107,157-165,191-200,293-298
1ogo d1ogox1 X:57-61,97-107,157-165,191-200,273-277
1ogm d1ogmx1 X:57-61,97-107,157-165,191-200,273-277
4. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
1w2u d1w2ua_ A:96-108,118-125,145-156,157-165,171-177
2nlr d2nlra_ A:97-109,118-125,145-156,157-165,170-176
1nlr d1nlra_ A:97-109,118-129,145-156,157-165,170-176
1ks5 d1ks5a_ A:92-104,114-121,141-154,155-165,170-177
1oa4 d1oa4a_ A:97-109,118-129,145-156,157-165,170-176
1qh7 d1qh7b_ B:78-90,92-99,119-131,137-149,153-158
1ks4 d1ks4a_ A:92-104,114-121,141-154,155-165,170-177
2bw8 d2bw8a1 A:99-111,120-129,149-159,160-169,173-180
1oa3 d1oa3c_ C:91-104,114-121,141-152,153-161,166-172
1oa3 d1oa3d_ D:91-104,114-121,141-152,153-161,166-172
1h8v d1h8vf_ F:91-104,114-121,141-152,153-161,166-172
1h8v d1h8ve_ E:91-104,114-121,141-152,153-161,166-172
1olq d1olqa_ A:91-104,114-121,141-152,153-161,166-172
2bw8 d2bw8b1 B:99-111,120-129,149-159,160-169,173-179
2bwc d2bwca1 A:99-111,120-129,149-159,160-169,173-179
1oa2 d1oa2c_ C:91-104,114-121,141-152,153-161,166-172
1olq d1olqb_ B:91-104,114-121,141-152,153-161,166-172
2bwa d2bwaa1 A:99-111,120-129,149-159,160-169,173-179
1h8v d1h8va_ A:91-104,114-121,141-152,153-161,166-172
1oa2 d1oa2a_ A:91-104,114-121,141-152,153-162,166-172
1h0b d1h0ba_ A:99-111,120-129,149-159,160-169,173-179
2bwc d2bwcb1 B:99-111,120-129,149-159,160-169,173-179
2bwa d2bwab1 B:99-111,120-129,149-159,160-169,173-180
1h0b d1h0bb_ B:99-111,120-129,149-159,160-169,173-179
2dcy d2dcyd1 D:61-74,75-87,102-114,121-133,139-146
1olr d1olra_ A:96-108,118-129,145-156,157-165,171-177
2b42 d2b42b1 B:62-74,75-87,102-114,121-133,139-145
2dcy d2dcye1 E:61-74,75-87,102-114,121-133,139-146
1oa3 d1oa3b_ B:91-104,114-125,141-152,153-162,166-172
1h8v d1h8vb_ B:91-104,114-125,141-152,153-162,166-172
1oa2 d1oa2f_ F:91-104,114-125,141-152,153-162,166-172
1oa2 d1oa2b_ B:91-104,114-125,141-152,153-162,166-172
1hix d1hixa_ A:70-82,85-92,111-123,129-141,146-150
1h8v d1h8vd_ D:91-104,114-125,141-152,153-162,166-172
1oa2 d1oa2e_ E:91-104,114-125,141-152,153-161,166-172
1oa2 d1oa2d_ D:91-104,114-125,141-152,153-161,166-172
1oa3 d1oa3a_ A:91-104,114-125,141-152,153-161,166-172
1h8v d1h8vc_ C:91-104,114-125,141-152,153-161,166-172
5. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1lyl d1lylb1 B:81-90,91-100,126-131,133-140,140-148
1bbu d1bbua1 A:81-90,91-100,126-131,133-140,140-148
2id0 d2id0b3 B:33-39,41-47,56-66,71-82,129-136
1lyl d1lylc1 C:81-90,91-100,126-131,133-140,140-148
1lyl d1lyla1 A:81-90,91-100,126-131,133-140,140-148
1e22 d1e22a1 A:81-90,91-100,126-131,133-140,140-148
1e24 d1e24a1 A:81-90,91-100,126-131,133-140,140-148
1e1o d1e1oa1 A:81-90,91-100,126-131,133-140,140-148
1b8a d1b8aa1 A:33-42,43-52,77-81,87-93,93-101
2id0 d2id0a3 A:32-39,41-48,57-68,69-82,129-136
1ue5 d1ue5b_ B:25-42,44-61,78-87,97-111,112-120
6. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1knf d1knfa2 A:145-151,207-216,244-254,256-264,283-288
1knd d1knda2 A:145-151,207-216,244-254,256-264,283-288
1zsw d1zswa2 A:76-86,154-165,188-194,201-208,212-217
7. d.166.1 ADP-ribosylation
ADP-ribosylation unusual fold
1qs1 d1qs1c1 C:2140-2149,2202-2211,2237-2251,2252-2265,2342-2352
1qs1 d1qs1a1 A:140-149,202-211,237-243,252-265,342-351
1qs2 d1qs2a1 A:140-149,202-211,237-243,252-265,342-351
8. b.52.1 Barwin-like endoglucanases
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
2g6g d2g6ga1 A:179-188,200-206,215-223,224-229,280-284
9. d.58.1 4Fe-4S ferredoxins
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1hfe d1hfel2 L:3-7,8-12,27-31,80-84,255-259
10. b.40.1 Staphylococcal nuclease
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1snd d1sndb_ B:21-28,29-36,80-84,86-90,90-95
11. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
3ckp d3ckpc1 C:14-21,24-32,35-42,116-122,169-177
3ckr d3ckrc1 C:14-21,24-32,35-42,116-122,169-177
3ckp d3ckpa1 A:11-21,24-32,35-42,116-122,148-156
2f3f d2f3fa1 A:12-21,24-32,35-42,116-122,171-177
2qmd d2qmda1 A:73-82,85-93,96-103,177-183,232-238
2ohm d2ohma1 A:11-21,24-32,35-42,116-122,148-156
2va5 d2va5a1 A:11-21,24-32,35-42,116-122,168-177
2oht d2ohta1 A:11-21,24-32,35-42,116-122,148-156
2zhs d2zhsa1 A:14-21,24-32,35-42,116-122,168-177
2ohq d2ohqa1 A:11-21,24-32,35-42,116-122,168-177
2ohm d2ohma1 A:11-21,24-32,35-42,116-122,168-177
3ckr d3ckrb1 B:14-21,24-32,35-41,116-122,169-177
1w50 d1w50a_ A:14-21,24-32,35-42,116-122,168-177
1w51 d1w51a_ A:14-21,24-32,35-42,116-122,168-177
2ohl d2ohla1 A:14-21,24-32,35-42,116-122,168-177
2oht d2ohta1 A:11-21,24-32,35-42,116-122,168-177
2ohn d2ohna1 A:14-21,24-32,35-42,116-122,168-177
2ohp d2ohpa1 A:11-21,24-32,35-42,116-122,168-177
1pso d1psoe_ E:190-200,208-215,220-224,298-302,309-316
1qrp d1qrpe_ E:190-200,208-215,220-224,298-302,309-316
4er4 d4er4e_ E:190-200,204A-215,219-224,300-304,310-317
1gkt d1gkta_ A:195-205,211-219,223-228,303-307,313-320
1eed d1eedp_ P:190-200,204A-215,219-224,300-304,310-317
12. b.77.2 delta-Endotoxin (insectocide), middle domain
beta-Prism I consists of 3 4-stranded sheets; strands are parallel to the 3-fold axis ! duplication: has internal pseudo threefold symmetry
1i5p d1i5pa2 A:307-322,328-343,372-386,388-401,421-431
13. b.68.1 Sialidases
6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
1v0e d1v0ee1 E:291-297,303-308,661-675,685-696,744-754
1v0f d1v0fe1 E:291-297,303-308,661-675,685-696,744-754
1v0e d1v0ef1 F:292-297,303-308,661-675,685-696,744-754
1v0e d1v0ea1 A:292-297,303-308,661-675,685-696,744-754
1v0f d1v0fa1 A:292-297,303-308,661-675,685-696,744-754
1v0f d1v0fb1 B:291-297,303-309,661-675,685-696,744-754
1v0e d1v0ec1 C:291-297,303-309,661-675,685-696,744-754
1v0e d1v0eb1 B:291-297,303-309,661-675,685-696,744-754
1v0f d1v0ff1 F:291-297,303-309,661-675,685-696,744-754
1v0f d1v0fc1 C:291-297,303-309,661-675,685-696,744-754
1v0e d1v0ed1 D:291-297,303-309,661-675,685-696,744-754
1v0f d1v0fd1 D:291-297,303-309,661-675,685-696,744-754
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 178 (enumeration index: query1451.1452) of S5
3qbh A:12-21,25-32,35-42,116-122,171-177
2dcj A:76-89,91-98,118-130,136-148,152-157
2dcj B:76-89,91-98,118-130,136-148,152-157
3ju4 A:291-297,303-309,661-675,685-696,744-754
2viz A:73-82,85-93,96-103,177-183,232-238
3erc D:341-348,355-361,387-393,394-400,403-408
3erc C:341-348,355-361,387-393,394-400,403-408
3rvi A:14-21,24-32,35-42,116-122,168-177
3l59 A:73-82,86-93,96-103,177-183,232-238
3mfa A:72-85,87-94,113-125,131-143,147-152
3mfc A:72-85,87-94,113-125,133-143,147-152
3s8i B:244-251,252-260,265-269,327-331,346-353
3s8i A:244-251,252-260,265-269,327-331,346-353
3b7m D:90-102,112-123,139-150,151-160,164-170
3b7m B:90-102,112-123,139-150,151-160,164-170
3b7m C:90-102,112-123,139-150,151-160,164-170
3b7m A:90-102,112-123,139-150,151-160,164-170
3k8a A:25-42,43-58,77-81,87-93,93-98
3k8a B:25-42,43-58,77-81,87-93,93-98
3nem A:33-42,43-52,77-81,87-93,93-101
3sm2 A:16-23,24-32,36-41,90-95,110-117
3ogv A:489-498,499-507,557-563,564-571,577-583
3ogv A:489-498,499-507,557-563,564-571,631-636
2zi8 A:144-150,212-221,250-260,262-272,290-294
3owg B:341-348,354-361,387-393,394-400,402-407
3owg A:342-348,354-361,387-393,394-400,402-407
2c1f A:92-102,111-118,136-147,156-166,170-175
3nen A:33-42,43-52,77-81,87-93,93-101
3ilv A:91-102,103-111,133-140,141-148,150-154
2z8g A:74-78,95-105,150-159,174-183,364-372
2z8g B:74-78,95-105,151-159,174-183,364-372
2z8g B:27-31,95-105,151-159,174-183,246-250
2z8g A:74-78,95-105,150-159,174-183,267-272
2z8g B:74-78,95-105,151-159,174-183,313-319
2z8g B:74-78,95-105,151-159,174-183,385-393
2z8g A:27-31,95-105,150-159,174-183,246-250
2z8g A:27-31,95-105,150-159,174-183,267-272
2z8g B:74-78,95-105,151-159,174-183,267-272
2z8g B:27-31,95-105,151-159,174-183,340-346
2z8g B:27-31,95-105,151-159,174-183,267-272
2z8g A:27-31,95-105,150-159,174-183,340-346
2z8g A:74-78,95-105,150-159,174-183,246-250
2z8g A:74-78,95-105,150-159,174-183,385-393
2z8g A:74-78,95-105,150-159,174-183,313-319
2z8g A:27-31,95-105,150-159,174-183,313-319
2z8g B:27-31,95-105,151-159,174-183,313-319
2z8g B:74-78,95-105,151-159,174-183,246-250
2z8g B:27-31,95-105,151-159,174-183,364-372
2z8g A:27-31,95-105,150-159,174-183,364-372
2jem B:129-142,153-160,179-192,194-205,209-215
2jem A:129-142,153-160,179-192,194-205,209-215
3er9 B:341-348,355-361,387-393,394-400,402-407
3ogr A:489-498,499-507,557-563,564-571,577-583
3ogr A:489-498,499-507,557-563,564-571,631-636
2f6b A:78-90,92-103,119-131,137-149,153-158
3b5l B:70-83,85-92,111-123,129-141,145-150
3ogs A:489-498,499-507,557-563,564-571,577-583
3ogs A:489-498,499-507,557-563,564-571,631-636
2dck A:76-89,91-98,118-130,136-148,152-157
3rtm A:11-21,24-32,35-42,116-122,168-177
3gvk A:291-297,303-309,661-675,685-696,744-754
3gvk B:291-297,303-308,661-675,685-696,744-754
3gvk C:292-297,303-308,661-675,685-696,744-754
3l5f A:73-82,85-93,96-103,177-183,232-238
2dcz B:61-74,75-87,102-114,121-133,139-145
2dcz A:61-74,75-87,102-114,121-133,139-146
1wmr B:27-31,95-105,151-159,174-183,313-319
1wmr A:27-31,95-105,150-159,174-183,246-251
1wmr B:27-31,95-105,151-159,174-183,246-250
1wmr A:27-31,95-105,150-159,174-183,340-346
1wmr B:74-78,95-105,151-159,174-183,246-250
1wmr B:27-31,95-105,151-159,174-183,267-272
1wmr A:74-78,95-105,150-159,174-183,313-319
1wmr B:27-31,95-105,151-159,174-183,340-346
1wmr A:74-78,95-105,150-159,174-183,267-272
1wmr B:74-78,95-105,151-159,174-183,385-393
1wmr B:74-78,95-105,151-159,174-183,267-272
1wmr A:27-31,95-105,150-159,174-183,313-319
1wmr A:74-78,95-105,150-159,174-183,364-372
1wmr B:74-78,95-105,151-159,174-183,364-372
1wmr A:74-78,95-105,150-159,174-183,385-393
1wmr A:27-31,95-105,150-159,174-183,267-272
1wmr B:74-78,95-105,151-159,174-183,313-319
1wmr B:27-31,95-105,151-159,174-183,364-372
1wmr A:27-31,95-105,150-159,174-183,364-372
2qz3 B:61-74,75-86,102-114,121-133,139-145
2qz3 A:61-74,75-86,102-114,121-133,139-146
3sm1 B:16-23,25-32,36-41,91-95,110-117
3sm1 A:16-23,24-32,36-41,91-95,110-117
3lnk A:73-82,85-93,96-103,177-183,232-238
3tpr A:14-21,24-32,35-42,116-122,169-177
2i1a B:204-211,212-220,224-229,286-291,305-311
2i1a D:204-211,212-220,225-229,286-290,306-311
2i1a A:204-211,212-220,224-229,286-291,306-311
2zyq B:144-150,212-221,250-260,262-272,290-294
2jen A:129-142,153-160,179-192,194-205,209-215
3m4f A:86-97,100-107,128-140,146-159,162-167
3m4f D:86-97,100-107,128-140,146-159,162-168
3m4f C:86-97,100-107,128-140,146-159,162-168
3m4f B:86-97,100-107,128-140,146-159,162-167
3gvl A:291-297,303-308,661-675,685-696,744-754
3gvj A:291-297,303-309,661-675,685-696,744-754
2qz2 A:63-74,77-84,105-117,123-136,139-144
3hd8 D:62-74,75-87,102-114,121-133,139-145
3hd8 B:62-74,75-87,102-114,121-133,139-146
3dla D:101-112,113-121,143-149,150-156,158-164
3dla C:101-112,113-121,143-149,150-156,158-164
3dla A:101-112,113-121,143-149,150-156,158-164
3dla C:101-112,113-121,143-149,150-156,303-309
3dla B:101-112,113-121,143-149,150-156,303-309
3dla B:101-112,113-121,143-149,150-156,158-164
3dla D:101-112,113-121,143-149,150-156,303-309
3dla A:101-112,113-121,143-149,150-156,303-309
3og2 A:489-498,499-507,557-563,564-571,577-583
3og2 A:489-498,499-507,557-563,564-571,631-636
2vg9 A:90-100,109-116,134-145,154-164,168-173
3ru1 A:11-21,24-32,35-42,116-122,168-177
1x0c B:74-78,95-105,150-159,174-183,364-372
1x0c B:27-31,95-105,150-159,174-183,313-319
1x0c A:27-31,95-105,151-159,174-183,340-346
1x0c B:74-78,95-105,150-159,174-183,267-272
1x0c B:27-31,95-105,150-159,174-183,340-346
1x0c A:74-78,95-105,151-159,174-183,313-319
1x0c B:27-31,95-105,150-159,174-183,267-272
1x0c A:74-78,95-105,151-159,174-183,246-250
1x0c A:74-78,95-105,151-159,174-183,267-272
1x0c B:74-78,95-105,150-159,174-183,385-393
1x0c B:74-78,95-105,150-159,174-183,313-319
1x0c A:27-31,95-105,151-159,174-183,246-250
1x0c B:74-78,95-105,150-159,174-183,246-250
1x0c B:27-31,95-105,150-159,174-183,246-250
1x0c A:27-31,95-105,151-159,174-183,313-319
1x0c A:74-78,95-105,151-159,174-183,364-372
1x0c A:74-78,95-105,151-159,174-183,385-393
1x0c A:27-31,95-105,151-159,174-183,267-272
1x0c B:27-31,95-105,150-159,174-183,364-372
1x0c A:27-31,95-105,151-159,174-183,364-372
3er8 D:341-348,355-361,387-393,394-400,402-408
3er8 C:341-348,355-361,387-393,394-400,402-408
2h2u B:54-67,81-87,114-122,123-131,176-183
3buh A:14-21,24-32,35-42,116-122,169-177
3msj C:14-21,24-32,35-42,116-122,169-177