1. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1p4k d1p4kc_ C:305-311,311-323,564-572,576-582,583-589
9gaf d9gafc_ C:305-311,311-328,564-572,576-582,583-589
9gaf d9gafa_ A:5-11,11-28,264-272,276-282,283-289
9gac d9gaca_ A:5-11,11-23,264-272,276-282,283-289
9gac d9gacc_ C:305-311,311-323,564-572,576-582,583-589
1p4v d1p4vc_ C:305-311,311-328,564-572,576-582,583-589
9gaa d9gaaa_ A:5-11,11-23,264-272,276-282,283-289
9gaa d9gaac_ C:305-311,311-323,564-572,576-582,583-589
1p4k d1p4ka_ A:5-11,11-28,264-272,276-282,283-289
1p4v d1p4va_ A:5-11,11-28,264-272,276-282,283-289
1p4k d1p4ka_ A:5-11,11-28,197-205,276-282,283-289
1p4v d1p4vc_ C:305-311,311-328,497-505,576-582,583-589
1p4v d1p4va_ A:5-11,11-28,197-204,276-282,283-289
2. b.1.2 Fibronectin type III
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1hwg d1hwgb1 B:63-71,73-80,92-98,106-114,115-124
3. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
1ws8 d1ws8d_ D:46-50,51-58,69-78,81-87,96-103
1ws7 d1ws7d_ D:46-50,51-58,69-78,81-87,96-103
1ws7 d1ws7a_ A:46-50,51-58,69-78,81-87,96-103
1ws8 d1ws8c_ C:46-50,51-58,70-78,81-87,96-103
1ws8 d1ws8b_ B:46-50,51-58,70-78,81-87,96-103
1ws7 d1ws7c_ C:46-50,51-58,70-78,81-87,96-103
1ws7 d1ws7b_ B:46-50,51-58,69-78,81-87,96-103
1f56 d1f56b_ B:35-39,40-47,58-66,68-75,84-90
1jer d1jera_ A:47-51,53-60,73-80,82-90,99-106
1ws8 d1ws8a_ A:46-50,51-58,69-77,79-87,96-103
1f56 d1f56c_ C:35-39,40-47,58-65,68-75,84-90
1shw d1shwa_ A:80-87,87-94,115-123,136-146,156-165
1f56 d1f56a_ A:35-39,40-47,58-65,67-75,84-91
2cbp d2cbpa_ A:40-44,45-52,64-70,72-79,89-96
4. b.1.18 E set domains "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies !
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2b20 d2b20a1 A:47-54,53-60,75-85,87-97,138-146
5. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1oc0 d1oc0a_ A:232-241,246-255,269-277,357-366,367-377
1c5g d1c5ga_ A:255-264,269-277,293-300,379-389,390-401
1dvn d1dvna_ A:232-241,246-254,270-277,356-366,367-378
2znh d2znha1 A:278-287,291-299,315-322,407-416,417-427
1azx d1azxi_ I:278-287,291-300,315-322,407-416,417-427
1ant d1antl_ L:278-287,291-299,315-322,407-416,417-427
2znh d2znhb1 B:278-287,291-299,315-322,407-416,417-427
1ath d1athb_ B:278-287,292-299,315-322,407-416,417-427
2b5t d2b5ti1 I:278-287,291-299,315-322,407-416,417-427
1br8 d1br8l_ L:278-287,291-299,315-322,407-416,417-427
1dzg d1dzgi_ I:278-287,291-299,367-377,407-416,417-427
1dvm d1dvmb_ B:232-241,246-254,270-277,357-366,367-377
1dzg d1dzgi_ I:278-287,291-299,315-322,407-416,417-427
1azx d1azxl_ L:278-287,291-299,315-322,407-416,417-427
1e03 d1e03l_ L:278-287,291-299,315-322,407-416,417-427
1oyh d1oyhl_ L:278-287,291-299,315-322,407-416,417-427
1t1f d1t1fb1 B:278-287,291-299,315-322,407-416,417-427
1t1f d1t1fc1 C:278-287,291-299,315-322,407-416,417-427
1t1f d1t1fa1 A:278-287,291-299,315-322,407-416,417-427
2beh d2behi1 I:278-287,291-300,365-376,407-416,417-427
1oyh d1oyhi_ I:278-287,291-300,365-376,407-416,417-427
1e05 d1e05i_ I:278-287,291-299,316-322,407-416,417-427
1uhg d1uhgb_ B:238-247,250-259,277-284,363-372,373-383
2b5t d2b5ti1 I:278-287,291-299,365-377,407-416,417-427
1ant d1anti_ I:278-287,291-299,365-376,407-416,417-427
1e04 d1e04i_ I:278-287,291-299,364-376,407-416,417-427
1dzh d1dzhi_ I:278-287,291-299,365-376,407-416,417-427
1t1f d1t1fb1 B:278-287,291-299,365-377,407-416,417-427
2hij d2hiji1 I:278-287,291-299,365-376,407-416,417-427
1t1f d1t1fc1 C:278-287,291-299,365-377,407-416,417-427
1t1f d1t1fa1 A:278-287,291-299,365-377,407-416,417-427
1jmj d1jmja_ A:333-342,343-354,370-377,455-464,465-475
1jmo d1jmoa_ A:333-342,343-354,370-377,455-464,465-475
1jti d1jtia_ A:238-247,248-259,277-284,363-372,373-383
1e03 d1e03i_ I:278-287,291-300,365-376,407-416,417-427
1ova d1ovaa_ A:247-256,256A-267,283-290,369-378,379-389
1sng d1snga_ A:218-227,236-247,296-308,341-349,350-359
1ath d1atha_ A:278-287,291-299,364-376,407-416,417-427
1ova d1ovad_ D:247-256,256A-267,283-290,369-378,379-389
1atu d1atua_ A:247-256,259-267,330-341,369-378,379-389
1ova d1ovab_ B:247-256,256A-267,283-290,369-378,379-389
1k9o d1k9oi_ I:238-247,248-262,276-283,366-374,375-384
1dzg d1dzgi_ I:278-287,300-311,367-377,407-416,417-427
1nq9 d1nq9i_ I:278-287,291-300,365-377,407-416,417-427
1sek d1seka_ A:238-247,248-262,276-283,366-374,375-384
2ant d2anti_ I:278-287,291-299,364-377,407-416,417-427
1e05 d1e05i_ I:278-287,291-299,364-377,407-416,417-427
1xqj d1xqja_ A:225-234,251-260,316-327,353-362,363-373
2b5t d2b5ti1 I:278-287,300-311,365-377,407-416,417-427
1xqg d1xqga_ A:225-234,251-260,316-327,353-362,363-373
2beh d2behi1 I:278-287,300-311,365-376,407-416,417-427
1xqg d1xqgb_ B:225-234,251-260,316-327,353-362,363-373
1oyh d1oyhi_ I:278-287,300-311,365-376,407-416,417-427
1e04 d1e04i_ I:278-287,300-311,364-376,407-416,417-427
2hij d2hiji1 I:278-287,300-311,365-376,407-416,417-427
1e03 d1e03i_ I:278-287,300-311,365-376,407-416,417-427
1t1f d1t1fb1 B:278-287,300-311,365-377,407-416,417-427
1t1f d1t1fc1 C:278-287,300-311,365-377,407-416,417-427
1t1f d1t1fa1 A:278-287,300-311,365-377,407-416,417-427
1ant d1anti_ I:278-287,300-311,365-376,407-416,417-427
1dzh d1dzhi_ I:278-287,300-311,365-376,407-416,417-427
1ath d1atha_ A:278-287,300-311,364-376,407-416,417-427
1sek d1seka_ A:238-247,261-272,325-336,366-374,375-384
1nq9 d1nq9i_ I:278-287,300-311,365-377,407-416,417-427
1kct d1kcta_ A:247-256,259-267,329-340,370-377,380-388
2ant d2anti_ I:278-287,300-311,364-377,407-416,417-427
1e05 d1e05i_ I:278-287,300-311,364-377,407-416,417-427
1br8 d1br8i_ I:278-287,300-311,363-376,407-416,417-427
2beh d2behl1 L:278-287,300-311,363-377,407-416,417-427
1dzh d1dzhl_ L:278-287,300-311,363-377,407-416,417-427
1dzg d1dzgl_ L:278-287,300-311,363-377,407-416,417-427
1br8 d1br8l_ L:278-287,300-311,363-377,407-416,417-427
2ant d2antl_ L:278-287,300-311,363-377,407-416,417-427
1e05 d1e05l_ L:278-287,300-311,363-377,407-416,417-427
1e04 d1e04l_ L:278-287,300-311,363-377,407-416,417-427
1nq9 d1nq9l_ L:278-287,300-311,363-377,407-416,417-427
1ant d1antl_ L:278-287,300-311,363-377,407-416,417-427
3evj d3evjl1 L:278-287,300-311,363-377,407-416,417-427
1qmn d1qmna_ A:247-256,268-278A,326-342,373-381,385-393
6. b.2.5 p53-like transcription factors
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1t4w d1t4wa_ A:275-288,292-300,351-360,373-384,386-400
2ocj d2ocjd1 D:154-164,165-172,226-237,250-260,262-275
7. d.161.1 ADC synthase the active site is formed by additional structures inserted into the core structure !
ADC synthase duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets
1k0e d1k0eb_ B:104-112,112-120,249-257,391-399,401-409
1k0g d1k0ga_ A:104-112,112-120,249-257,391-399,401-409
1k0g d1k0gb_ B:104-112,112-120,249-257,391-399,401-409
1k0e d1k0ea_ A:104-112,112-120,249-257,391-399,401-409
8. e.52.1 NAD kinase/diacylglycerol kinase-like
NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit]
2bon d2bonb1 B:137-143,162-171,254-261,264-269,270-275
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 737 (enumeration index: query1464.2353.2490) of S5
3igk A:154-164,165-172,229-237,250-260,262-275
3igl A:154-164,165-172,229-237,250-260,262-275
3qec A:63-72,73-86,117-123,126-142,143-159
2x11 B:80-87,87-94,115-123,136-146,156-165
2xjs A:38-45,50-57,80-84,134-148,214-226
2xjs A:38-45,56-63,80-84,134-148,214-226
2xjs A:38-45,50-57,128-133,134-148,214-226
2xjs A:38-45,56-63,128-133,134-148,214-226
2xjp A:38-45,50-57,80-84,134-148,214-226
2xjp A:38-45,56-63,80-84,134-148,214-226
2xjp A:38-45,50-57,128-133,134-148,214-226
2xjp A:38-45,56-63,128-133,134-148,214-226
2zv6 A:240-249,250-261,279-286,368-377,378-388
2zv6 C:240-249,250-261,279-286,368-377,378-388
1x9r A:44-49,50-57,69-77,80-87,95-102
1x9r B:44-49,50-57,69-76,78-87,95-102
2xjq A:38-45,50-57,80-84,134-148,214-226
2xjq A:38-45,56-63,80-84,134-148,214-226
2xjq A:38-45,50-57,128-133,134-148,214-226
2xjq A:38-45,56-63,128-133,134-148,214-226
2v95 A:230-239,242-250,311-323,351-360,361-371
2v95 A:230-239,251-262,311-323,351-360,361-371
3hr6 A:86-95,101-111,138-143,147-154,166-171
2hi9 A:244-252,255-263,279-286,368-375,377-385
2hi9 B:244-252,264-275,326-337,368-375,377-385
2zak B:4-14,21-46,224-232,293-302,303-311
2zak B:4-14,21-46,284-291,293-302,303-311
2zak A:4-14,21-46,224-232,293-302,303-311
2zak A:4-14,21-46,284-291,293-302,303-311
2cb6 G:94-100,102-110,157-161,164-174,208-217
2cb6 O:94-100,102-110,157-161,164-174,208-217
2cb6 H:94-100,102-110,157-161,164-174,208-217
2cb6 J:94-100,102-110,157-161,164-174,208-217
2cb6 I:94-100,102-110,157-161,164-174,208-217
2cb6 B:94-100,102-110,157-161,164-174,208-217
2cb6 F:94-100,102-110,157-161,164-174,208-217
2cb6 A:94-100,102-110,157-161,164-174,208-217
2cb6 L:94-100,102-110,157-161,164-174,208-217
2cb6 C:94-100,102-110,157-161,164-174,208-217
2cb6 P:94-100,102-110,157-161,164-174,208-217
2cb6 N:94-100,102-110,157-161,164-174,208-217
2cb6 D:94-100,102-110,157-161,164-174,208-217
2cb6 E:94-100,102-110,157-161,164-174,208-217
2cb6 M:94-100,102-110,157-161,164-174,208-217
2cb6 K:94-100,102-110,157-161,164-174,208-217
2dut D:253-262,279-289,343-354,386-395,396-406
2dut B:253-262,279-289,343-354,386-395,396-406
2dut B:253-262,269-278,343-354,386-395,396-406
2dut C:253-262,279-289,343-354,386-395,396-406
2dut D:253-262,269-278,343-354,386-395,396-406
2dut C:253-262,269-278,343-354,386-395,396-406
2dut A:253-262,269-278,343-354,386-395,396-406
2dut A:253-262,279-289,343-354,386-395,396-406
1wz9 A:225-234,251-260,316-327,353-362,363-373
1wz9 B:225-234,241-250,268-275,353-362,363-373
1wz9 B:225-234,251-260,316-327,353-362,363-373
3le2 A:233-242,243-258,323-334,367-376,377-387
2p52 A:151-161,162-169,226-234,247-257,263-272
3ljq A:5-11,11-28,197-205,276-282,283-289
3ljq A:5-11,11-28,264-272,276-282,283-289
3ljq C:305-311,311-323,564-572,576-582,583-589
2a8j B:41-52,54-79,363-373,375-384,389-396
2a8j B:41-52,54-79,284-292,375-384,389-396
2a8j A:41-52,54-79,364-373,375-384,389-396
2a8j A:41-52,54-79,281-293,375-384,389-396
2pee A:271-280,284-292,308-315,400-409,410-420
2pee B:271-280,284-293,308-315,400-409,410-420
2xjv A:38-45,50-57,80-84,134-148,214-226
2xjv A:38-45,56-63,80-84,134-148,214-226
2xjv A:38-45,50-57,128-133,134-148,214-226
2xjv A:38-45,56-63,128-133,134-148,214-226
3d0a D:154-164,165-172,229-237,250-260,266-275
3c17 A:4-16,21-46,284-291,293-302,303-311
3c17 A:4-16,21-46,224-232,293-302,303-311
3c17 B:4-16,21-46,284-291,293-302,303-311
3c17 B:4-16,21-46,224-232,293-302,303-311
2biq A:154-164,165-172,229-237,250-260,266-275
2a8m A:41-51,54-79,281-293,375-384,389-396
2a8m B:41-52,54-79,284-293,375-384,389-396
2a8m B:41-52,54-79,363-373,375-384,389-396
2a8m A:41-51,54-79,364-373,375-384,389-396
2a8l B:41-52,54-79,281-293,375-384,389-396
2a8l A:41-52,54-79,281-293,375-384,389-396
2a8l B:41-52,54-79,364-373,375-384,389-396
2a8l A:41-52,54-79,364-373,375-384,389-396
3ozq A:242-251,252-263,276-283,368-376,377-386
3fn9 A:33-38,43-53,61-65,78-90,139-151
3fn9 C:33-38,43-54,61-65,78-90,139-151
3fn9 B:33-38,43-53,61-65,78-90,139-151
3fn9 D:33-38,43-54,61-65,78-90,139-151
2vh4 A:271-280,284-293,308-315,399-409,410-422
1x9u A:44-49,50-57,69-76,78-87,95-102
1x9u B:44-49,50-57,69-77,80-87,95-102
2ceo A:244-253,265-276,327-339,370-379,380-390
2ceo B:244-253,265-276,327-339,370-379,380-390
2ceo B:244-253,256-264,327-339,370-379,380-390
2ceo A:244-253,256-264,327-339,370-379,380-390
2bip A:154-164,165-172,229-237,250-260,266-275
3pzf A:255-264,268-277,292-299,385-394,395-405
3dlw A:248-257,269-280,328-344,375-383,388-395
2xju A:38-45,50-57,80-84,134-148,214-226
2xju A:38-45,56-63,80-84,134-148,214-226
2xju A:38-45,50-57,128-133,134-148,214-226
2xju A:38-45,56-63,128-133,134-148,214-226
3r4l A:255-264,278-289,340-352,380-389,390-400
3eox A:232-241,255-266,318-330,357-366,367-377
3f1s A:274-283,296-307,359-370,398-407,408-418
2ybg B:154-164,165-172,226-237,250-260,262-275
3htl X:87-95,101-111,137-145,147-154,166-171
2a8i A:41-52,54-79,284-292,375-384,389-396
2a8i B:41-52,54-79,284-292,375-384,389-396
2a8i B:41-52,54-79,361-373,375-384,389-396
2a8i A:41-52,54-79,363-374,375-384,389-396
2ol2 B:243-252,255-263,279-286,368-375,377-385
2xwc A:172-182,183-190,249-257,270-280,286-295
3jyb A:49-56,61-69,78-84,87-97,155-165
3jyb B:49-56,61-69,78-84,87-97,155-165
2xjt A:38-45,50-57,80-84,134-148,214-226
2xjt A:38-45,56-63,80-84,134-148,214-226
2xjt A:38-45,50-57,128-133,134-148,214-226
2xjt A:38-45,56-63,128-133,134-148,214-226
2xjr A:38-45,50-57,80-84,134-148,214-226
2xjr A:38-45,50-57,128-133,134-148,214-226
2xjr A:38-45,56-63,128-133,134-148,214-226
2xjr A:38-45,56-63,80-84,134-148,214-226
1xu8 A:225-234,238-251,316-327,353-362,363-373
1xu8 B:225-234,251-260,316-327,353-362,363-373
1xu8 A:225-234,238-251,268-275,353-362,363-373
1xu8 A:225-234,251-260,316-327,353-362,363-373
1xu8 B:225-234,238-251,316-327,353-362,363-373
2b39 A:588-597,597-605,784-795,799-810,812-824
2pef A:271-280,284-292,308-315,400-409,410-420
4a1r A:56-66,67-74,101-112,117-125,133-139
4a1r D:57-66,67-74,101-112,117-125,133-139
4a1r C:56-66,67-74,101-112,117-124,133-139
4a1r B:56-66,67-74,101-112,117-125,133-139
2dmk A:46-55,60-68,80-86,91-102,103-115
1y1u B:367-375,375-385,409-423,439-450,455-470
1y1u A:367-375,375-385,409-423,439-450,455-470
1y1u C:367-375,375-385,409-423,439-450,455-470
2h6o A:345-353,357-364,387-394,400-410,412-424
3h5c A:274-283,287-295,311-318,398-407,408-418
3h5c A:274-283,296-307,359-370,398-407,408-418
3h5c A:274-283,287-295,359-370,398-407,408-418
2vdx A:238-247,250-258,274-281,360-369,370-380
2vdx B:238-247,250-258,317-333,360-369,370-380
2xbz A:49-56,61-69,78-84,87-97,155-165
2vdy A:238-247,250-258,274-281,360-369,370-380
2vdy B:238-247,250-258,274-281,360-369,370-380
2vdy B:238-247,250-258,317-333,360-369,370-380