1. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family,
Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
2ahd d2ahdc1 C:100-111,114-120,122-130,131-139,146-156
2ahd d2ahda1 A:100-111,114-120,122-130,131-139,146-156
2ahd d2ahdd1 D:300-311,314-320,322-330,331-339,346-356
2ahd d2ahdb1 B:300-311,314-320,322-330,331-339,346-356
1s3n d1s3na_ A:100-111,114-120,122-130,131-139,146-156
1s3n d1s3nb_ B:300-311,314-320,322-330,331-339,346-356
2yvt d2yvta1 A:201-212,214-220,222-229,230-237,242-250
1s3m d1s3mb_ B:300-311,314-320,322-330,331-339,346-356
1s3m d1s3ma_ A:100-111,114-120,122-130,131-139,146-156
1s3l d1s3la_ A:100-111,114-120,124-130,131-137,146-156
1s3l d1s3lb_ B:300-311,314-320,324-330,331-337,346-356
2cv9 d2cv9c1 C:148-160,164-170,178-182,184-193,227-238
2z06 d2z06d1 D:148-160,164-170,178-182,184-193,226-238
2z06 d2z06b1 B:148-160,164-170,178-182,184-193,226-238
1g5b d1g5bb_ B:161-171,180-186,192-196,197-202,212-218
2z06 d2z06c1 C:148-160,164-170,178-182,184-193,226-238
1t70 d1t70a_ A:151-163,167-173,181-185,187-196,229-241
1t70 d1t70c_ C:751-763,767-773,781-785,787-796,829-841
2cv9 d2cv9b1 B:148-160,164-170,178-182,184-192,227-238
1t70 d1t70b_ B:451-463,467-473,481-485,487-496,529-541
2r17 d2r17b1 B:95-107,109-115,117-125,126-134,170-181
3ck2 d3ck2a1 A:90-102,104-110,112-120,121-129,168-172
2cv9 d2cv9d1 D:148-160,164-170,177-182,184-190,227-238
1w24 d1w24a1 A:95-107,109-115,117-125,126-134,170-181
1uf3 d1uf3e_ E:169-180,182-187,189-197,198-206,210-218
1uf3 d1uf3a_ A:169-180,182-187,189-197,198-206,210-218
2r17 d2r17a1 A:95-107,109-115,117-125,126-134,170-181
1t70 d1t70h_ H:2251-2263,2267-2273,2281-2285,2287-2295,2329-2341
2z06 d2z06a1 A:148-160,164-170,178-182,184-192,226-238
1uf3 d1uf3d_ D:169-180,182-187,189-197,198-206,210-218
1oi8 d1oi8a2 A:232-241,245-251,277-281,282-287,293-304
1uf3 d1uf3b_ B:169-180,182-187,189-197,198-206,210-218
1t70 d1t70f_ F:1651-1663,1667-1673,1681-1685,1687-1695,1729-1741
2cv9 d2cv9a1 A:148-160,164-170,178-182,184-192,226-238
2a22 d2a22b1 B:110-122,124-130,132-140,141-149,185-196
1uf3 d1uf3f_ F:169-180,182-187,189-197,198-206,210-218
1oid d1oidb2 B:232-241,245-251,277-281,282-287,293-304
1t70 d1t70d_ D:1051-1063,1067-1073,1081-1085,1087-1095,1129-1141
1uf3 d1uf3c_ C:169-180,182-187,189-197,198-206,210-218
2r17 d2r17a1 A:95-107,109-115,117-125,126-134,147-157
1ho5 d1ho5b2 B:232-241,245-251,277-281,282-287,293-304
1oid d1oida2 A:232-241,245-251,277-281,282-287,293-304
1hpu d1hpub2 B:232-241,245-251,277-281,282-287,293-304
2z1a d2z1aa2 A:217-228,232-237,258-264,266-273,279-290
2r17 d2r17b1 B:95-107,109-115,117-125,126-134,147-157
1hp1 d1hp1a2 A:232-241,245-251,277-281,282-287,293-304
1oie d1oiea2 A:232-241,245-251,277-281,282-287,293-304
1hpu d1hpua2 A:232-241,245-251,277-281,282-287,293-304
1oi8 d1oi8b2 B:232-241,245-251,277-281,282-287,293-304
3ck2 d3ck2a1 A:90-102,104-110,112-120,121-129,140-149
1ho5 d1ho5a2 A:232-241,245-251,277-281,282-287,293-304
1hpu d1hpud2 D:232-241,245-251,277-281,282-287,293-304
1ush d1usha2 A:232-241,245-251,277-281,282-287,293-304
1hpu d1hpuc2 C:232-241,245-251,277-281,282-287,293-304
2ush d2usha2 A:232-241,245-251,277-281,282-287,293-304
2ush d2ushb2 B:232-241,245-251,277-281,282-287,293-304
1w24 d1w24a1 A:95-107,109-115,117-125,126-134,147-157
1t70 d1t70g_ G:1951-1963,1967-1973,1981-1985,1987-1993,2029-2041
1qfc d1qfca_ A:198-213,214-221,223-231,233-241,292-301
1qhw d1qhwa_ A:226-234,236-242,244-252,254-262,313-323
1qhw d1qhwa_ A:226-234,236-242,244-252,254-262,292-300
1t70 d1t70e_ E:1351-1363,1367-1373,1381-1385,1387-1393,1429-1441
2a22 d2a22b1 B:110-122,124-130,132-140,141-149,162-172
2a22 d2a22a1 A:110-122,124-130,132-140,141-149,162-172
1ute d1utea_ A:204-213,215-221,223-231,233-241,292-301
1nnw d1nnwa_ A:154-166,169-175,177-185,186-194,204-213
1g5b d1g5ba_ A:161-171,180-186,192-196,197-201,212-218
1qfc d1qfca_ A:198-213,214-221,223-231,233-241,271-280
1nnw d1nnwb_ B:154-166,169-175,177-185,186-194,204-213
1g5b d1g5bc_ C:161-171,180-186,192-196,197-201,212-218
2a22 d2a22a1 A:110-122,124-130,132-140,141-149,185-196
2nxf d2nxfa1 A:244-256,259-265,267-275,277-285,313-321
1ute d1utea_ A:204-213,215-221,223-231,233-241,271-280
2zo9 d2zo9b1 B:164-171,189-195,197-205,206-214,234-244
3d03 d3d03e1 E:174-186,189-195,197-205,206-213,235-244
1t71 d1t71a_ A:161-173,177-183,190-195,197-203,239-253
3d03 d3d03b1 B:174-186,189-195,198-205,206-213,235-244
3d03 d3d03d1 D:174-186,189-195,197-205,206-213,235-244
2zo9 d2zo9c1 C:164-171,187-195,197-205,206-213,234-244
2dxl d2dxlb1 B:164-171,187-195,197-205,206-213,234-244
3c9f d3c9fb2 B:224-239,242-248,251-258,261-269,272-280
3c9f d3c9fa2 A:224-239,242-248,251-258,261-269,272-280
2nyl d2nylf1 F:221-233,235-241,247-252,255-260,268-280
2. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1yp4 d1yp4c1 C:283-296,398-405,429-434,436-442,441-448
1yp4 d1yp4d1 D:283-296,398-405,429-434,436-442,447-451
1yp4 d1yp4b1 B:283-296,398-405,429-434,436-442,447-451
1yp4 d1yp4c1 C:283-296,398-405,429-434,436-442,447-451
3. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1h65 d1h65b_ B:18-36,38-46,77-85,86-94,117-121
1h65 d1h65a_ A:18-36,38-46,77-85,86-94,117-121
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 939 (enumeration index: query1472.1480.1908) of S5
3flo G:555-568,629-634,638-645,646-653,664-672
3flo C:555-568,629-634,638-645,646-653,664-672
3flo A:555-568,629-634,638-645,646-653,664-672
3flo E:555-568,629-634,638-645,646-653,664-672
3e0j G:360-372,400-407,407-418,420-430,435-443
3e0j E:360-372,400-407,407-418,420-430,435-443
3e0j A:360-372,400-407,407-418,420-430,435-443
3e0j C:360-372,400-407,407-418,420-430,435-443
3qfm A:144-156,158-164,166-174,176-184,200-209
3qfm B:144-156,158-164,166-174,176-184,200-209
3qfn A:144-156,158-164,166-174,176-184,200-209
3qfn B:144-156,158-164,166-174,176-184,200-209
3t2d A:22-40,42-51,278-284,285-292,300-311
3qfk A:211-221,225-232,235-241,242-250,253-264
3rqz A:127-139,141-147,149-155,180-187,197-206
3rqz B:127-139,141-147,149-155,180-187,197-206
3rqz C:127-139,141-147,149-155,180-187,197-206
3t2g A:22-40,42-51,278-284,285-291,300-311
3rl4 A:232-244,246-251,258-263,264-270,283-290
3bb1 E:18-36,38-46,77-85,86-94,117-121
2wdf A:276-288,291-296,305-309,310-316,321-332
1war A:203-211,212-219,221-229,231-239,290-300
1war A:203-211,212-219,221-229,231-239,269-277
2wde A:276-288,291-296,305-309,310-316,321-332
3ive A:231-242,245-251,259-263,264-272,275-285
3t2f A:22-40,42-51,278-284,285-292,300-311
3t2e A:22-40,42-51,278-284,285-292,300-311
2wdd A:276-288,291-296,305-309,310-316,321-332
3ivd A:231-242,245-251,259-263,264-272,275-287
2kkn A:92-105,109-114,120-125,126-132,138-147
2xmo A:261-273,275-281,283-293,295-305,438-442
2xmo B:261-273,275-281,283-293,295-305,438-442
2bq8 X:203-211,212-219,221-229,231-239,269-277
2bq8 X:203-211,212-219,221-229,231-239,290-300
2wdc A:276-288,291-296,305-309,310-316,321-332
3rl5 A:232-244,246-252,258-263,264-270,283-290
3gve B:228-237,240-247,266-270,271-279,282-295
3gve A:228-237,240-247,266-270,271-276,282-295
3t2c A:22-40,42-51,278-284,285-292,300-311
3t2b A:22-40,42-51,278-284,285-292,300-311
2gju B:154-166,169-175,177-185,186-194,204-213
2gju C:154-166,169-175,177-185,186-194,204-213
2gju A:154-166,169-175,177-185,186-194,204-213
2gju D:154-166,169-175,177-185,186-194,204-213
3rl3 A:232-244,246-252,258-263,264-270,283-290
3jyf A:224-232,236-243,262-266,267-272,278-290
3jyf B:224-232,236-243,262-266,267-275,278-290
3jyf B:224-232,236-243,244-248,267-275,278-290