1. c.1.4 FMN-linked oxidoreductases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1jrc d1jrca_ A:40-46,70-75,96-102,104-119,122-129
1jqx d1jqxb_ B:40-46,70-75,96-102,104-119,122-129
1ovd d1ovdb_ B:40-46,70-75,96-102,104-119,122-129
2bx7 d2bx7a1 A:40-46,70-75,96-102,104-119,122-129
1jub d1juba_ A:40-46,70-75,96-102,104-119,122-129
1jub d1jubb_ B:40-46,70-75,96-102,104-119,122-129
1ovd d1ovda_ A:40-46,70-75,96-102,104-119,122-129
1jrc d1jrcb_ B:40-46,70-75,96-102,104-119,122-129
2bsl d2bslb1 B:40-46,70-75,96-102,104-119,122-129
2bx7 d2bx7b1 B:40-46,70-75,96-102,104-119,122-129
1jrb d1jrbb_ B:40-46,69-75,96-102,104-119,122-129
1jqx d1jqxa_ A:40-46,69-75,96-102,104-119,122-129
2bsl d2bsla1 A:40-46,70-75,96-102,104-119,122-129
1jue d1jueb_ B:40-46,70-75,96-102,104-119,122-129
1jue d1juea_ A:40-46,70-75,96-102,104-119,122-129
2dor d2dora_ A:40-46,70-75,96-102,104-119,122-129
1dor d1dorb_ B:40-46,70-75,96-102,104-119,122-129
1jrb d1jrba_ A:40-46,70-75,96-102,104-119,122-129
1dor d1dora_ A:40-46,70-75,96-102,104-119,122-129
1jqv d1jqvb_ B:40-46,70-75,96-101,104-119,122-128
1jqv d1jqva_ A:40-46,70-75,96-101,104-119,122-128
2dor d2dorb_ B:40-46,70-75,96-101,104-119,122-129
2b4g d2b4gd1 D:39-47,70-76,93-101,103-115,123-130
2b4g d2b4gb1 B:39-47,70-76,94-100,103-115,123-129
2b4g d2b4gc1 C:39-47,71-76,94-100,103-115,123-130
2b4g d2b4ga1 A:39-47,71-76,94-100,103-115,123-130
2. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1l9x d1l9xa_ A:10-16,29-34,67-73,81-101,105-110
1l9x d1l9xb_ B:10-16,29-34,67-73,81-101,105-110
1l9x d1l9xc_ C:10-16,29-34,67-73,81-101,105-110
1l9x d1l9xd_ D:10-16,29-34,67-73,81-101,105-110
3. c.92.2 "Helical backbone" metal receptor contains a long alpha helical insertion in the interdomain linker !
Chelatase-like duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
1n4a d1n4ab_ B:5133-5139,5145-5149,5188-5193,5195-5207,5212-5217
2qi9 d2qi9f1 F:155-161,167-171,210-216,217-229,234-240
1n2z d1n2za_ A:155-161,166-171,210-216,217-229,234-240
1n2z d1n2zb_ B:155-161,167-171,210-216,217-229,235-240
4. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1ktb d1ktba2 A:98-107,113-117,135-142,145-164,167-172
5. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
2uz3 d2uz3d1 D:42-49,63-68,91-97,102-116,117-124
2uz3 d2uz3b1 B:42-49,64-68,91-97,102-116,117-124
1xx6 d1xx6a1 A:38-45,60-65,83-89,94-108,108-116
2b8t d2b8td1 D:42-49,62-68,91-97,102-116,117-124
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 429 (enumeration index: query153.1168.2394) of S5
3clh A:27-34,49-53,87-94,94-110,113-120
3clh B:26-34,48-53,87-94,94-110,113-120
3i65 A:243-251,276-282,306-313,320-335,337-342
3gye B:39-47,71-76,94-101,103-115,123-129
3gye A:39-47,71-76,94-101,103-115,123-129
2ja1 A:38-45,60-65,83-89,94-108,108-116
3f4a A:32-39,45-49,84-90,93-108,116-123
3f4a B:32-39,45-49,84-90,92-109,116-122
3fs5 A:32-39,45-49,83-90,94-109,115-122
3c3n D:40-48,72-77,94-101,104-116,124-130
3c3n B:40-48,72-77,94-102,104-116,124-129
3c3n C:40-48,72-77,94-101,104-116,124-130
2djx B:38-46,70-75,93-100,102-114,122-129
2djx A:38-46,70-75,93-100,102-114,122-129
2djl B:38-46,70-75,92-100,102-114,122-129
2djl A:38-46,70-75,92-100,102-114,122-129
3mhu A:39-47,71-76,94-101,103-115,123-130
3mhu B:39-47,71-76,94-101,103-115,123-130
3rj0 A:563-569,612-618,657-663,671-678,681-687
2e6a A:38-46,70-75,92-100,102-114,122-129
2e6a B:38-46,70-75,92-100,102-114,122-129
3riz A:563-569,612-618,657-663,671-678,681-687
3rgz A:563-569,612-618,657-663,671-678,681-687
2e68 B:38-46,70-75,92-100,102-114,122-129
2e68 A:38-46,70-75,92-100,102-114,122-129
2e6f A:38-46,70-75,92-100,102-114,122-129
2e6f B:38-46,70-75,92-100,102-114,122-129
2e6d B:38-46,70-75,92-100,102-114,122-129
2e6d A:38-46,70-75,92-100,102-114,122-129
3gz3 B:39-47,71-76,94-101,103-115,123-129
3gz3 A:39-47,71-76,94-101,103-115,123-129
3mjy A:39-47,71-76,94-101,103-115,123-130
3mjy B:39-47,71-76,94-101,103-115,123-130
3oix C:40-48,71-77,96-102,105-116,124-129
3oix A:40-48,71-77,96-102,105-116,124-129
3oix B:40-48,71-77,96-102,105-116,124-129
3oix D:40-48,71-77,96-102,105-116,124-130
3c61 A:39-47,71-76,94-101,103-115,123-130
3c61 D:39-47,71-76,94-101,103-115,123-130
3c61 B:39-47,71-76,94-101,103-115,123-130
3c61 C:39-47,71-76,94-101,103-115,123-130
3rgx A:563-569,612-618,657-663,671-678,681-687