1. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1t9g d1t9gs_ S:118-124,131-143,144-149,168-177,178-184
1efp d1efpb_ B:115-121,128-140,141-146,165-174,175-181
1efp d1efpd_ D:115-121,128-140,141-146,165-174,175-181
1efv d1efvb_ B:118-124,131-143,145-149,168-177,178-184
2a1u d2a1ub1 B:118-124,131-143,145-149,168-177,178-184
2a1t d2a1tr1 R:106-112,113-128,131-136,136-140,163-169
2a1u d2a1ua1 A:106-112,113-128,131-136,136-140,163-169
1efv d1efva1 A:106-112,113-128,131-136,136-140,163-169
1t9g d1t9gr_ R:106-112,113-128,131-136,136-140,163-169
1efp d1efpc1 C:85-91,92-107,110-115,115-119,142-148
1efp d1efpb_ B:115-121,128-140,141-146,149-154,175-181
1efp d1efpd_ D:115-121,128-140,141-146,149-154,175-181
1t9g d1t9gs_ S:118-124,131-143,144-149,152-157,178-184
3clu d3clud1 D:89-95,96-111,112-117,118-125,150-156
2a1u d2a1ub1 B:118-124,131-143,145-149,152-157,178-184
1o96 d1o96d1 D:89-95,96-111,112-117,118-125,150-156
1o96 d1o96b1 B:89-95,96-111,112-117,118-125,150-156
1o96 d1o96f1 F:89-95,96-111,112-117,118-125,150-156
1efv d1efvb_ B:118-124,131-143,145-149,152-157,178-184
1o97 d1o97d1 D:89-95,96-110,112-117,118-125,150-156
1o94 d1o94f_ F:89-95,96-111,112-117,118-125,150-156
1o94 d1o94d_ D:89-95,102-111,112-117,118-125,150-156
3clt d3cltd1 D:89-95,102-111,112-117,118-125,150-156
3clr d3clrd1 D:89-95,102-111,112-117,118-125,150-156
3cls d3clsd1 D:89-95,102-111,112-117,118-125,150-156
1o96 d1o96z1 Z:89-95,102-111,112-116,118-125,150-156
1o94 d1o94f_ F:89-95,96-111,112-117,138-145,150-156
1o96 d1o96f1 F:89-95,96-111,112-117,138-145,150-156
3clu d3clud1 D:89-95,96-111,112-117,138-145,150-156
1o97 d1o97d1 D:89-95,96-110,112-117,138-145,150-156
1o96 d1o96d1 D:89-95,96-111,112-117,138-145,150-156
1o95 d1o95f_ F:89-95,96-111,112-117,138-145,150-156
1o95 d1o95d_ D:89-95,96-111,112-117,138-145,150-156
1o96 d1o96b1 B:89-95,96-111,112-117,138-145,150-156
1o94 d1o94d_ D:89-95,102-111,112-117,138-145,150-156
3cls d3clsd1 D:89-95,102-111,112-117,138-145,150-156
3clr d3clrd1 D:89-95,102-111,112-117,138-145,150-156
1o96 d1o96z1 Z:89-95,102-111,112-116,138-145,150-156
3clt d3cltd1 D:89-95,102-111,112-117,138-145,150-156
2. d.157.1 Metallo-hydrolase/oxidoreductase
Metallo-hydrolase/oxidoreductase duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
1vjn d1vjnb_ B:155-161,173-182,184-188,189-194,200-206
1vjn d1vjna_ A:155-161,173-182,184-189,190-194,200-207
3. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1ufq d1ufqd_ D:20-27,32-45,55-61,122-128,130-137
1uj2 d1uj2a_ A:20-27,32-45,55-61,122-128,130-137
1esn d1esna_ A:88-95,100-116,120-126,186-192,194-201
1xrj d1xrjb1 B:20-27,32-45,55-61,122-128,130-137
1esn d1esnb_ B:88-95,100-116,120-126,186-192,194-201
1esn d1esnd_ D:88-95,100-116,120-126,186-192,194-201
1xrj d1xrja1 A:20-27,32-45,55-61,122-128,130-137
1sq5 d1sq5b_ B:2088-2095,2100-2116,2120-2126,2186-2192,2194-2201
1esn d1esnc_ C:88-95,100-116,120-126,186-192,194-201
1ufq d1ufqc_ C:20-27,32-45,55-61,122-128,130-137
1ufq d1ufqa_ A:20-27,32-45,55-61,122-128,130-137
1sq5 d1sq5d_ D:4088-4095,4100-4116,4120-4126,4186-4191,4194-4201
1ufq d1ufqb_ B:20-27,32-45,55-61,123-128,130-137
1sq5 d1sq5a_ A:1088-1095,1100-1116,1120-1126,1186-1191,1194-1201
1sq5 d1sq5c_ C:3088-3095,3100-3116,3121-3126,3186-3191,3194-3201
1uj2 d1uj2b_ B:20-27,32-45,55-61,123-128,130-137
1uei d1ueia_ A:20-27,32-44,55-61,122-128,130-137
1odf d1odfa_ A:31-38,43-60,64-70,146-151,154-161
1udw d1udwa_ A:20-27,32-44,55-61,122-128,130-137
1uej d1uejb_ B:20-27,32-46,55-61,122-128,130-137
1udw d1udwb_ B:20-27,32-46,55-61,122-128,130-137
1uei d1ueib_ B:20-27,32-46,55-61,122-128,130-137
1uej d1ueja_ A:20-27,32-46,55-61,122-128,130-137
1rz3 d1rz3a_ A:22-29,34-50,52-58,112-122,126-133
1q3t d1q3ta_ A:16-23,28-41,42-46,79-86,136-142
2an9 d2an9a1 A:3-11,16-29,32-36,79-86,96-103
4. c.40.1 Methylesterase CheB, C-terminal domain
Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567
1a2o d1a2oa2 A:183-190,192-208,209-214,216-220,223-228
1chd d1chda_ A:184-190,192-207,209-214,216-220,223-228
5. c.124.1 NagB/RpiA/CoA transferase-like
NagB/RpiA/CoA transferase-like core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
2g40 d2g40a1 A:57-63,63-76,148-156,158-162,204-212
6. c.60.1 Phosphoglycerate mutase-like
Phosphoglycerate mutase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
1dkn d1dkna_ A:5-17,48-70,82-88,290-294,296-302
1dkq d1dkqa_ A:5-17,48-70,82-88,290-294,296-302
1dkp d1dkpa_ A:5-17,48-70,82-87,290-294,296-302
1dkl d1dkla_ A:5-17,48-70,82-88,290-294,296-302
7. c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
Aminoacid dehydrogenase-like, N-terminal domain core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
1llq d1llqa2 A:146-151,155-167,172-178,179-183,213-221
1llq d1llqb2 B:146-151,155-167,172-178,179-183,213-221
1o0s d1o0sb2 B:146-151,155-167,172-178,179-183,213-221
1o0s d1o0sa2 A:146-151,155-167,172-178,179-183,213-221
1gz3 d1gz3b2 B:132-137,139-151,156-162,163-167,197-205
1gz3 d1gz3d2 D:132-137,139-151,156-162,163-167,197-205
1pj3 d1pj3a2 A:132-137,139-151,156-162,163-167,197-205
1gz3 d1gz3a2 A:132-137,139-151,156-162,163-167,197-205
1efl d1eflb2 B:132-137,142-151,156-162,163-167,197-205
1gz3 d1gz3c2 C:132-137,139-151,156-162,163-167,197-205
1efl d1efld2 D:132-137,142-151,156-162,163-167,197-205
1pj2 d1pj2a2 A:132-137,139-151,156-162,163-167,197-205
1efl d1eflc2 C:132-137,142-151,156-162,163-167,197-205
1pj2 d1pj2d2 D:3132-3137,3142-3151,3156-3162,3163-3167,3197-3205
1efk d1efkb2 B:132-137,139-151,156-162,163-167,197-205
1efl d1efla2 A:132-137,142-151,156-162,163-167,197-205
1gz4 d1gz4c2 C:132-137,142-151,156-162,163-167,197-205
1pj2 d1pj2b2 B:1132-1137,1139-1151,1156-1162,1163-1167,1197-1205
1qr6 d1qr6b2 B:1132-1137,1142-1151,1156-1162,1163-1167,1197-1205
1pjl d1pjlc2 C:2132-2137,2142-2151,2156-2162,2163-2167,2197-2205
1pj3 d1pj3d2 D:3132-3137,3142-3151,3156-3162,3163-3167,3197-3205
1efk d1efkc2 C:132-137,142-151,156-162,163-167,197-205
1gq2 d1gq2m2 M:132-137,139-151,156-162,163-167,197-205
1qr6 d1qr6a2 A:132-137,142-151,156-162,163-167,197-205
1pj4 d1pj4c2 C:2132-2137,2142-2151,2156-2162,2163-2167,2197-2205
1gq2 d1gq2p2 P:132-137,139-151,156-162,163-167,197-205
1pj4 d1pj4d2 D:3132-3137,3142-3151,3156-3162,3163-3167,3197-3205
1gq2 d1gq2h2 H:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2j2 J:132-137,139-151,156-162,163-167,197-205
1pjl d1pjlb2 B:1132-1137,1139-1151,1156-1162,1163-1167,1197-1205
1gq2 d1gq2e2 E:132-137,139-151,156-162,163-167,197-205
1pj2 d1pj2c2 C:2132-2137,2142-2151,2156-2162,2163-2167,2197-2205
1gq2 d1gq2a2 A:132-137,139-151,156-162,163-167,197-205
1pj3 d1pj3c2 C:2132-2137,2142-2151,2156-2162,2163-2167,2197-2205
1gq2 d1gq2k2 K:132-137,139-151,156-162,163-167,197-205
1gz4 d1gz4a2 A:132-137,142-151,156-162,163-167,197-205
1do8 d1do8a2 A:132-137,142-151,156-162,163-167,197-205
1pj4 d1pj4a2 A:132-137,142-151,156-162,163-167,197-205
1gq2 d1gq2o2 O:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2n2 N:132-137,139-151,156-162,163-167,197-205
1pj4 d1pj4b2 B:1132-1137,1142-1151,1156-1162,1163-1167,1197-1205
1gq2 d1gq2b2 B:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2l2 L:132-137,139-151,156-162,163-167,197-205
1pjl d1pjlf2 F:5132-5137,5139-5151,5156-5162,5163-5167,5197-5205
1gz4 d1gz4b2 B:132-137,142-151,156-162,163-167,197-205
1gq2 d1gq2d2 D:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2c2 C:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2f2 F:132-137,139-151,156-162,163-167,197-205
1pjl d1pjle2 E:4132-4137,4142-4151,4156-4162,4163-4167,4197-4205
1pj3 d1pj3b2 B:1132-1137,1142-1151,1156-1162,1163-1167,1197-1205
1gq2 d1gq2g2 G:132-137,139-151,156-162,163-167,197-205
1gq2 d1gq2i2 I:132-137,139-151,156-162,163-167,197-205
1gz4 d1gz4d2 D:132-137,142-151,156-162,163-167,197-205
1efk d1efka2 A:132-137,142-151,156-162,163-167,197-205
1pjl d1pjlg2 G:6132-6137,6142-6151,6156-6162,6163-6167,6197-6205
1pjl d1pjld2 D:3132-3137,3142-3150,3156-3162,3163-3167,3197-3205
1pjl d1pjla2 A:132-137,142-150,156-162,163-167,197-205
1efk d1efkd2 D:132-137,142-150,156-162,163-167,197-205
1pjl d1pjlh2 H:7132-7137,7142-7151,7156-7162,7163-7167,7197-7205
8. d.145.1 FAD-binding/transporter-associated domain-like
FAD-binding/transporter-associated domain-like consists of two alpha+beta subdomains
1ahu d1ahub2 B:72-77,79-94,96-102,103-107,118-124
1ahu d1ahua2 A:72-77,79-94,96-102,103-107,118-124
1e0y d1e0ya2 A:72-77,79-94,96-102,103-107,118-124
1e0y d1e0yb2 B:72-77,79-94,96-102,103-107,118-124
1vao d1vaob2 B:72-77,79-94,96-102,103-107,118-124
1vao d1vaoa2 A:72-77,79-94,96-102,103-107,118-124
1dzn d1dzna2 A:72-77,79-94,96-102,103-107,118-124
1dzn d1dznb2 B:72-77,79-94,96-102,103-107,118-124
1w1m d1w1mb2 B:72-77,79-94,96-102,103-107,118-124
1e8g d1e8gb2 B:72-77,79-94,96-102,103-107,116-124
1e8f d1e8fa2 A:72-77,79-94,96-102,103-107,118-124
1w1j d1w1jb2 B:72-77,79-94,96-102,103-107,118-124
1e8g d1e8ga2 A:72-77,79-94,96-102,103-107,116-124
1qlt d1qltb2 B:72-77,79-94,96-102,103-107,118-124
1ahz d1ahzb2 B:72-76,79-94,96-102,103-107,116-124
1w1l d1w1lb2 B:72-77,79-94,96-102,103-107,118-124
1w1j d1w1ja2 A:72-76,79-94,96-102,103-107,118-124
1w1k d1w1ka2 A:72-76,79-94,96-102,103-107,118-124
1w1l d1w1la2 A:72-76,79-94,96-102,103-107,118-124
1ahv d1ahva2 A:72-76,79-94,96-102,103-107,116-124
1ahv d1ahvb2 B:72-76,79-94,96-102,103-107,116-124
1w1m d1w1ma2 A:72-76,79-94,96-102,103-107,118-124
1ahz d1ahza2 A:72-76,79-94,96-102,103-107,118-124
1qlu d1qlub2 B:72-77,79-94,96-102,103-107,118-124
1e8h d1e8ha2 A:72-76,79-94,96-102,103-107,116-124
1qlu d1qlua2 A:72-77,79-94,96-102,103-107,118-124
1w1k d1w1kb2 B:72-77,79-94,96-102,103-107,118-124
1qlt d1qlta2 A:72-76,79-94,96-102,103-107,118-124
1e8f d1e8fb2 B:72-76,79-94,96-102,103-107,118-124
1e8h d1e8hb2 B:72-76,79-94,96-102,103-107,116-124
9. e.2.1 Replication terminator protein (Tus)
Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich
2ewj d2ewja1 A:93-103,103-133,160-164,250-255,256-265
2i05 d2i05a1 A:93-103,103-133,160-164,250-255,256-265
1ecr d1ecra_ A:93-102,103-133,160-164,166-182,256-264
2ewj d2ewja1 A:93-103,103-133,160-164,166-181,256-265
2i05 d2i05a1 A:93-103,103-133,160-164,167-181,256-265
10. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology !
(Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423
2cne d2cnea1 A:77-85,88-103,105-111,182-186,210-216
1q6p d1q6pa_ A:577-585,588-603,605-611,682-686,710-716
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 740 (enumeration index: query1577.2410) of S5
2zsd A:90-97,102-117,122-128,188-194,196-203
2zsb A:90-97,102-117,122-128,188-194,196-203
3asy A:6-13,18-31,33-39,98-104,106-113
3asy B:6-13,18-31,33-39,98-104,106-113
3avp A:90-97,102-117,122-128,188-194,196-203
3u6u C:30-37,67-94,96-102,131-139,151-157
3u6u A:30-37,67-94,96-102,131-139,151-157
3aez A:90-97,102-117,122-128,188-194,196-203
3af0 A:90-97,102-117,122-128,188-194,196-203
2fjn A:577-585,588-603,605-611,682-686,710-716
3iwa A:136-140,142-154,159-165,223-231,247-252
3iwa A:136-140,142-154,159-165,241-246,247-252
2get A:90-97,102-117,122-128,188-194,196-203
2uvq A:23-30,35-48,58-64,126-131,133-140
2wri Y:131-138,145-158,160-164,172-181,255-264
3tqc B:89-96,101-117,121-127,187-193,195-201
3tqc A:89-96,101-117,121-127,187-193,195-202
3af3 A:90-97,102-117,122-128,188-194,196-203
3af1 A:90-97,102-117,122-128,188-194,196-203
2xsy Y:131-138,145-158,160-164,172-181,255-264
1z6g A:5-11,16-29,31-35,78-85,96-103
3mbc B:169-174,226-245,246-251,326-331,368-374
2zse A:90-97,102-117,122-128,188-194,196-203
2zs8 A:90-97,102-117,122-128,188-194,196-203
3m4u A:91-96,99-114,116-122,200-204,224-230
3m4u B:91-96,99-114,116-122,200-204,224-230
2ga8 A:24-31,36-60,155-161,253-258,261-268
2o0f A:136-143,150-163,164-169,177-186,250-260
3sft A:186-193,195-210,212-217,219-223,226-231
3ih5 B:90-96,97-112,114-118,120-131,162-168
3ih5 C:90-96,97-112,114-118,150-156,162-168
3ih5 B:90-96,97-112,114-118,150-156,162-168
3ih5 C:90-96,97-112,114-118,120-131,162-168
3avo A:90-97,102-117,122-128,188-194,196-203
2gev A:90-97,102-117,122-128,188-194,196-203
3s61 B:186-190,192-199,207-214,316-326,347-352
3s61 A:186-190,192-199,208-214,338-347,347-352
3s61 A:186-190,192-199,208-214,316-326,347-352
3s61 B:186-190,192-199,207-214,338-347,347-352
2gaa A:24-31,36-60,155-161,253-258,261-268
2zsa A:90-97,102-117,122-128,188-194,196-203
3l76 A:34-44,62-89,91-97,114-119,129-135
3l76 B:34-44,62-89,91-97,114-119,129-135
2i5k A:84-88,253-264,266-274,282-288,373-379
2aw5 B:122-127,132-141,146-152,153-157,187-195
2aw5 A:122-127,132-141,146-152,153-157,187-195
2aw5 C:122-127,132-141,146-152,153-157,187-195
2geu A:90-97,102-117,122-128,188-194,196-203
2xuy Y:131-138,145-158,160-164,172-181,255-264
3tr5 C:133-140,147-160,161-166,174-183,246-256
3tr5 D:133-140,147-160,161-166,174-183,246-256
3af2 A:90-97,102-117,122-128,188-194,196-203
3af4 A:90-97,102-117,122-128,188-194,196-203
2zs7 A:90-97,102-117,122-128,188-194,196-203
2ges A:90-97,102-117,122-128,188-194,196-203
2zsf A:90-97,102-117,122-128,188-194,196-203
3avq A:90-97,102-117,122-128,188-194,196-203
2jeo A:23-30,35-48,58-64,126-131,133-140
3b85 A:135-141,146-162,234-242,257-261,260-269
3b85 B:135-141,146-162,234-242,257-261,260-269
2zs9 A:90-97,102-117,122-128,188-194,196-203
3asz A:6-13,18-31,33-39,99-104,106-113
3asz B:6-13,18-31,33-39,98-104,106-113
2h5e A:136-143,150-163,164-169,177-186,250-260
2h5e B:136-143,150-163,164-169,177-186,250-260
3s5w B:186-190,192-199,208-214,338-347,347-352
3s5w B:186-190,192-199,208-214,316-326,347-352
3ce9 B:12-17,23-32,113-120,137-147,148-153
3ce9 D:12-17,23-32,113-120,137-147,148-153
3ce9 C:12-17,23-32,113-120,137-147,148-153
3ce9 A:12-17,23-32,113-120,137-147,148-153
1do8 B:1132-1137,1139-1151,1156-1162,1163-1167,1197-1205
1do8 C:2132-2137,2139-2151,2156-2162,2163-2167,2197-2205
1do8 D:3132-3137,3139-3151,3156-3162,3163-3167,3197-3205