1. b.82.2 Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold !
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1yci d1ycia1 A:49-59,60-65,193-202,202-211,268-276
1h2l d1h2la_ A:49-59,60-65,193-202,202-211,267-276
2. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1sng d1snga_ A:9-28,31-35,296-308,341-349,350-359
1qlp d1qlpa_ A:24-46,48-53,331-341,369-378,379-389
2hij d2hiji1 I:49-71,74-79,365-376,407-416,417-427
1e04 d1e04i_ I:49-71,74-79,364-376,407-416,417-427
1by7 d1by7a_ A:3-24,26-31,351-363,393-402,403-413
1dzg d1dzgi_ I:45-71,74-79,367-377,407-416,417-427
1jvq d1jvqi_ I:45-71,74-79,367-376,407-416,417-427
1lk6 d1lk6i_ I:45-71,74-79,367-376,407-416,417-427
1r1l d1r1li_ I:45-71,74-79,367-376,407-416,417-427
1dvm d1dvmb_ B:4-28,30-35,318-328,357-366,367-377
1b3k d1b3kc_ C:7-28,30-35,318-329,357-366,367-377
1atu d1atua_ A:21-46,49-53,330-341,369-378,379-389
1b3k d1b3ka_ A:7-28,30-35,318-329,357-366,367-377
1b3k d1b3kb_ B:7-28,30-35,318-329,357-366,367-377
1a7c d1a7ca_ A:3-28,30-35,320-329,357-366,367-377
1b3k d1b3kd_ D:7-28,30-35,318-329,357-366,367-377
1jmo d1jmoa_ A:102-127,130-135,417-427,455-464,465-475
1ant d1anti_ I:46-71,74-79,365-376,407-416,417-427
1oyh d1oyhi_ I:45-71,74-79,365-376,407-416,417-427
1xqj d1xqja_ A:-2-24,26-31,316-327,353-362,363-373
1ath d1atha_ A:46-70,74-79,364-376,407-416,417-427
1oc0 d1oc0a_ A:6-28,30-35,317-329,357-366,367-377
1db2 d1db2b_ B:4-28,30-35,317-329,357-366,367-377
2beh d2behi1 I:45-71,74-79,365-376,407-416,417-427
1dzh d1dzhi_ I:45-71,74-79,365-376,407-416,417-427
1dvn d1dvna_ A:3-28,31-35,270-277,356-366,367-378
2ant d2anti_ I:48-71,74-79,364-377,407-416,417-427
1sr5 d1sr5a_ A:45-71,74-79,365-376,407-416,417-427
1t1f d1t1fb1 B:45-71,74-79,365-377,407-416,417-427
1t1f d1t1fa1 A:45-71,74-79,365-377,407-416,417-427
1t1f d1t1fc1 C:45-71,74-79,365-377,407-416,417-427
1sek d1seka_ A:11-39,41-46,325-336,366-374,375-384
1tb6 d1tb6i_ I:45-71,74-79,365-376,407-416,417-427
1e03 d1e03i_ I:45-71,74-79,365-376,407-416,417-427
1lj5 d1lj5a_ A:3-28,31-35,270-277,356-366,367-378
1azx d1azxi_ I:45-71,74-79,365-376,407-416,417-427
1c5g d1c5ga_ A:26-51,54-58,293-300,379-389,390-401
1e05 d1e05i_ I:45-71,74-79,364-377,407-416,417-427
2b5t d2b5ti1 I:45-71,74-79,365-377,407-416,417-427
2gd4 d2gd4i1 I:45-71,74-79,364-376,407-416,417-427
2gd4 d2gd4c1 C:45-71,74-79,364-376,407-416,417-427
1k9o d1k9oi_ I:11-39,41-46,325-336,366-374,375-384
1nq9 d1nq9i_ I:45-71,74-79,365-377,407-416,417-427
1xqj d1xqja_ A:-2-24,26-31,158-169,353-362,363-373
1jmj d1jmjb_ B:102-127,130-135,416-428,455-464,465-475
1xqg d1xqgb_ B:-2-24,26-31,158-169,353-362,363-373
1br8 d1br8i_ I:46-71,74-79,363-376,407-416,417-427
1jrr d1jrra_ A:5-24,26-31,348-363,393-402,403-413
1imv d1imva_ A:29-54,56-61,332-345,373-382,383-393
1nq9 d1nq9l_ L:45-70,74-79,363-377,407-416,417-427
1ant d1antl_ L:46-71,74-79,363-377,407-416,417-427
1azx d1azxl_ L:45-71,74-79,363-377,407-416,417-427
1e03 d1e03l_ L:45-71,74-79,363-377,407-416,417-427
2b4x d2b4xl1 L:43-70,75-79,363-377,407-416,417-427
1lk6 d1lk6l_ L:45-71,75-79,363-377,407-416,417-427
2ant d2antl_ L:43-71,74-79,363-377,407-416,417-427
3evj d3evjl1 L:45-71,75-79,363-377,407-416,417-427
1jvq d1jvql_ L:45-71,75-79,363-377,407-416,417-427
1dzg d1dzgl_ L:42-71,74-79,363-377,407-416,417-427
2beh d2behl1 L:43-71,74-79,363-377,407-416,417-427
1dzh d1dzhl_ L:43-71,74-79,363-377,407-416,417-427
1e05 d1e05l_ L:42-71,74-79,363-377,407-416,417-427
1br8 d1br8l_ L:43-71,75-79,363-377,407-416,417-427
2hij d2hijl1 L:43-71,74-79,363-377,407-416,417-427
1r1l d1r1ll_ L:42-71,75-79,363-377,407-416,417-427
1att d1atta_ A:46-72,75-80,363-378,408-417,418-428
1e04 d1e04l_ L:42-71,75-79,363-377,407-416,417-427
1jmj d1jmja_ A:102-127,130-135,413-428,455-464,465-475
1att d1attb_ B:46-72,75-80,362-378,408-417,418-428
3. b.7.1 C2 domain (Calcium/lipid-binding domain, CaLB) two constituent families are related by circular permutation !
C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
2fju d2fjub2 B:218-227,678-689,756-766,772-778,789-799
2zkm d2zkmx2 X:218-226,676-689,756-766,772-778,789-799
1qas d1qasb2 B:211-223,627-640,652-662,729-735,746-756
1djw d1djwa2 A:211-223,627-640,652-662,729-735,746-756
1qat d1qata2 A:211-223,627-640,652-662,729-735,746-756
1qas d1qasa2 A:211-223,627-640,652-662,729-735,746-756
1dji d1djia2 A:211-223,627-640,652-662,729-735,746-756
1djx d1djxa2 A:211-223,627-640,652-662,729-735,746-756
1qat d1qatb2 B:211-223,627-640,652-662,729-735,746-756
1dji d1djib2 B:211-223,627-640,652-662,729-735,746-756
1djy d1djya2 A:211-223,627-640,652-662,729-735,746-756
1djh d1djha2 A:211-223,627-640,652-662,729-735,746-756
1djx d1djxb2 B:211-223,627-640,652-662,729-735,746-756
2isd d2isdb2 B:211-223,627-640,652-662,729-735,746-756
1djw d1djwb2 B:211-223,627-640,652-662,729-735,746-756
1djg d1djga2 A:211-223,627-640,652-662,729-735,746-756
1djz d1djza2 A:211-223,627-640,652-662,729-735,746-756
1djh d1djhb2 B:211-223,627-640,652-662,729-735,746-756
1djz d1djzb2 B:211-223,627-640,652-662,729-735,746-756
1djy d1djyb2 B:211-223,627-640,652-662,729-735,746-756
1djg d1djgb2 B:211-223,627-640,652-662,729-735,746-756
2fju d2fjub2 B:218-227,678-689,694-705,772-778,789-799
2isd d2isda2 A:211-223,627-640,651-662,729-735,746-756
1qat d1qatb2 B:211-223,627-640,713-723,729-735,746-756
2zkm d2zkmx2 X:218-226,676-689,694-705,772-778,789-799
2fju d2fjub2 B:287-297,678-689,756-766,772-778,789-799
1djw d1djwa2 A:211-223,627-640,712-723,729-735,746-756
1djw d1djwb2 B:211-223,627-640,712-723,729-735,746-756
1qat d1qata2 A:211-223,627-640,712-723,729-735,746-756
2isd d2isda2 A:211-223,627-640,712-723,729-735,746-756
1djy d1djya2 A:211-223,627-640,712-723,729-735,746-756
1djx d1djxa2 A:211-223,627-640,712-723,729-735,746-756
1djh d1djha2 A:211-223,627-640,712-723,729-735,746-756
1djz d1djza2 A:211-223,627-640,712-723,729-735,746-756
1djg d1djga2 A:211-223,627-640,712-723,729-735,746-756
2isd d2isdb2 B:211-223,627-640,712-723,729-735,746-756
1djx d1djxb2 B:211-223,627-640,712-723,729-735,746-756
1djy d1djyb2 B:211-223,627-640,712-723,729-735,746-756
1djh d1djhb2 B:211-223,627-640,712-723,729-735,746-756
1dji d1djib2 B:211-223,627-640,712-723,729-735,746-756
1djg d1djgb2 B:211-223,627-640,712-723,729-735,746-756
1dji d1djia2 A:211-223,627-640,712-723,729-735,746-756
1djz d1djzb2 B:211-223,627-640,712-723,729-735,746-756
1qas d1qasa2 A:211-223,627-640,712-723,729-735,746-756
1qas d1qasb2 B:211-223,627-640,712-723,729-735,746-756
2isd d2isda2 A:271-282,627-640,651-662,729-735,746-756
1qat d1qatb2 B:271-282,627-640,713-723,729-735,746-756
1qat d1qata2 A:271-282,627-640,712-723,729-735,746-756
1djy d1djyb2 B:271-282,627-640,712-723,729-735,746-756
2isd d2isda2 A:271-282,627-640,712-723,729-735,746-756
1djx d1djxa2 A:271-282,627-640,712-723,729-735,746-756
1djx d1djxb2 B:271-282,627-640,712-723,729-735,746-756
1qas d1qasa2 A:271-282,627-640,712-723,729-735,746-756
1qas d1qasb2 B:271-282,627-640,712-723,729-735,746-756
1djy d1djya2 A:271-281,627-640,712-723,729-735,746-756
1djz d1djza2 A:271-281,627-640,712-723,729-735,746-756
4. d.31.1 Cdc48 domain 2-like
Cdc48 domain 2-like beta-alpha-beta(3); 2 layers: alpha/beta
1cz4 d1cz4a2 A:70-78,96-104,126-130,132-136,148-156
1cz5 d1cz5a2 A:70-78,96-104,126-130,132-136,148-156
1s3s d1s3sa3 A:85-93,112-119,143-148,149-156,159-170
5. b.62.1 Cyclophilin-like
Cyclophilin-like barrel, closed; n=8, S=10; complex topology
1x7f d1x7fa1 A:257-268,278-283,299-304,305-311,320-325
6. b.44.1 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain probably related to the second domain and its superfamiy by a circular permutation !
Elongation factor/aminomethyltransferase common domain barrel, closed; n=6, S=10; greek-key
1ha3 d1ha3b2 B:88-99,314-324,333-337,383-391,392-401
1ha3 d1ha3b2 B:113-127,314-324,333-337,383-391,392-401
7. c.68.1 Nucleotide-diphospho-sugar transferases
Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
2vfz d2vfza1 A:194-213,219-225,227-231,241-246,282-287
1tw5 d1tw5a_ A:227-244,246-252,254-258,269-274,292-297
1nkh d1nkhb_ B:227-244,246-252,254-258,269-274,292-297
1nqi d1nqid_ D:227-244,246-252,254-258,269-274,292-297
2jck d2jcka1 A:1194-1214,1219-1225,1227-1231,1241-1246,1282-1287
1nwg d1nwgd_ D:227-244,246-252,254-258,269-274,292-297
1pzy d1pzyd_ D:227-244,246-252,254-258,269-274,292-297
1vzu d1vzub_ B:1194-1214,1219-1225,1227-1231,1241-1246,1282-1287
2jcl d2jcla1 A:1194-1213,1219-1225,1227-1231,1242-1246,1282-1287
1fgx d1fgxb_ B:227-244,246-252,254-258,269-274,292-297
1gww d1gwwb_ B:194-214,219-225,227-231,241-246,282-287
1vzt d1vztb1 B:1194-1213,1219-1225,1227-1231,1241-1246,1282-1287
1vzt d1vzta1 A:194-213,219-225,227-231,241-246,282-287
1vzu d1vzua_ A:194-214,219-225,227-231,241-246,282-287
1nf5 d1nf5b_ B:227-244,246-252,254-258,270-274,292-297
2vfz d2vfzb1 B:1194-1213,1219-1225,1227-1231,1241-1246,1282-1287
1o7o d1o7ob_ B:1194-1214,1219-1225,1227-1231,1241-1246,1282-1287
1nqi d1nqib_ B:227-244,246-252,254-258,270-274,292-297
2vs5 d2vs5a1 A:194-213,219-225,227-231,241-246,282-287
1pzy d1pzyb_ B:227-244,246-252,254-258,269-274,292-297
1vzx d1vzxb_ B:1194-1214,1219-1225,1227-1231,1241-1246,1282-1287
1gx0 d1gx0b_ B:194-214,219-225,227-231,241-246,282-287
1vzx d1vzxa_ A:194-214,219-225,227-231,241-246,282-287
2vs5 d2vs5b1 B:194-214,219-225,227-231,241-246,282-287
1fr8 d1fr8a_ A:227-243,246-252,254-258,270-274,292-297
1nwg d1nwgb_ B:227-243,246-252,254-258,270-274,292-297
1fgx d1fgxa_ A:227-244,246-252,254-258,270-274,292-297
1fr8 d1fr8b_ B:227-244,246-252,254-258,270-274,292-297
1gwv d1gwvb_ B:194-213,219-225,227-231,241-246,282-287
1k4v d1k4vb_ B:1194-1214,1219-1225,1227-1231,1241-1246,1282-1287
1o7q d1o7qb_ B:194-214,219-225,227-231,241-246,282-287
1o7q d1o7qa_ A:194-214,219-225,227-231,241-246,282-287
1k4v d1k4va_ A:194-214,219-225,227-231,241-246,282-287
2jcj d2jcja1 A:194-214,219-225,227-231,242-246,282-287
1gx4 d1gx4b_ B:194-214,219-225,227-231,241-246,282-287
1gx4 d1gx4a_ A:194-214,219-225,227-231,241-246,282-287
1gww d1gwwa_ A:194-213,219-225,227-231,242-246,282-287
1g93 d1g93a_ A:194-214,219-225,227-231,242-246,282-287
1gx0 d1gx0a_ A:194-214,219-225,227-231,242-246,282-287
1gwv d1gwva_ A:194-214,219-225,227-231,242-246,282-287
1o7o d1o7oa_ A:194-213,219-225,227-231,242-246,282-287
1g8o d1g8oa_ A:194-213,219-225,227-231,242-246,282-287
2rix d2rixa1 A:186-197,205-211,213-217,228-232,268-273
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 943 (enumeration index: query1586.1600.2522) of S5
1yxa A:47-67,69-74,353-364,395-404,405-415
3qq8 A:85-93,112-119,143-148,150-157,158-169
3i0j A:181-199,205-211,213-217,227-232,268-273
3od4 A:49-59,60-65,193-202,202-211,268-276
3i0c A:181-198,205-211,213-217,227-232,268-273
3qr1 A:228-240,649-661,667-678,744-750,761-772
3qr1 D:228-240,649-661,667-678,744-750,761-772
3qr1 A:228-240,649-661,728-738,744-750,761-772
3qr1 D:228-240,649-661,728-738,744-750,761-772
2zv6 B:1-20,25-30,324-337,368-377,378-388
2zv6 A:2-24,25-30,324-337,368-377,378-388
2zv6 C:1-20,25-30,324-337,368-377,378-388
3mq3 A:13-22,37-48,199-210,338-346,445-455
3qc8 A:85-93,112-119,143-148,150-157,158-169
3lw2 A:7-28,30-35,270-277,356-366,367-378
3dru B:24-46,48-53,330-341,369-378,379-389
3dru C:24-46,48-53,330-341,369-378,379-389
2d7i A:216-228,231-237,239-243,259-265,320-325
3q03 B:3-28,30-35,317-329,357-366,367-377
3q03 A:6-28,30-35,317-329,357-366,367-377
3q02 A:6-28,30-35,317-328,357-366,367-377
3q02 B:3-28,30-35,317-329,357-366,367-377
2p72 A:49-69,72-78,80-84,104-110,121-127
3fgq A:22-42,44-49,334-345,375-384,385-395
3fgq B:22-42,44-49,334-345,375-384,385-395
2r9y A:48-75,77-82,349-360,387-396,397-407
3i0e A:181-198,205-211,213-217,227-232,268-273
2vxl A:194-214,219-225,227-231,242-246,282-287
2v95 A:7-32,34-39,311-323,351-360,361-371
3i0f A:186-198,205-211,213-217,227-232,268-273
2hi9 C:28-42,44-49,326-337,368-375,377-385
2hi9 A:28-42,44-49,326-337,368-375,377-385
2hi9 B:28-42,44-49,326-337,368-375,377-385
2dut C:1-24,27-31,343-354,386-395,396-406
2dut A:1-24,27-31,343-354,386-395,396-406
2dut B:1-24,27-31,343-354,386-395,396-406
2dut D:1-24,27-31,343-354,386-395,396-406
2c0n A:36-52,55-62,63-69,83-87,119-124
2d7r A:216-228,231-237,239-243,259-265,320-325
2d4y B:277-314,332-337,347-352,360-368,407-415
2d4y A:277-314,332-337,347-352,360-368,407-415
3pb1 I:5-28,30-35,317-329,357-366,367-377
2wgz A:194-214,219-225,227-231,241-246,282-287
2wgz B:194-214,219-225,227-231,241-246,282-287
3qr0 A:228-240,649-661,666-677,744-750,761-772
3qr0 A:228-240,649-661,728-738,744-750,761-772
1wz9 A:1-24,26-31,316-327,353-362,363-373
1wz9 A:1-24,26-31,158-169,353-362,363-373
1wz9 B:1-24,27-31,158-169,353-362,363-373
1wz9 B:1-24,27-31,316-327,353-362,363-373
3le2 A:2-26,29-34,323-334,367-376,377-387
3n3c A:13-22,37-48,199-210,338-347,445-455
3n3c A:13-22,37-48,53-62,338-347,445-455
2pee A:56-75,79-84,358-370,400-409,410-420
2pee B:56-75,79-84,357-370,400-409,410-420
3tiw A:85-93,112-119,143-148,149-156,159-169
3tiw B:85-93,112-119,143-148,150-157,158-169
3hu3 B:85-93,112-119,143-148,150-157,158-169
3hu3 A:85-93,112-119,143-148,150-157,158-169
2y0i A:49-59,60-65,193-202,202-211,267-276
2wy1 A:63-92,96-101,264-270,427-436,437-448
2wy1 B:63-92,96-101,264-270,427-436,437-448
2wy1 A:63-92,96-101,387-402,427-436,437-448
2wy1 B:63-92,96-101,387-402,427-436,437-448
2vxm A:198-213,219-225,227-231,242-247,282-287
2arr A:5-24,26-31,348-363,393-402,403-413
2vh4 B:56-75,80-84,355-370,400-409,410-420
2vh4 A:56-75,79-84,308-315,399-409,410-422
3ioh A:186-200,205-211,213-217,227-232,268-273
2z86 A:218-231,233-240,241-245,262-266,336-342
2vs4 B:194-214,219-225,227-231,242-246,282-287
2vs4 A:194-214,219-225,227-231,241-246,282-287
2rj0 A:180-197,205-211,213-217,227-232,268-273
2arq A:5-24,26-31,348-363,393-402,403-413
2ceo A:20-42,44-49,327-339,370-379,380-390
2ceo B:20-42,44-49,327-339,370-379,380-390
2xum A:49-59,60-65,193-202,202-211,267-276
3i0d A:186-198,205-211,213-217,227-232,268-273
3ioj B:180-200,205-211,213-217,227-232,268-273
3ioj A:180-200,205-211,213-217,227-232,268-273
2oay A:112-137,143-148,418-429,453-463,464-475
2oay A:112-137,143-148,445-449,453-463,464-475
3nda A:2-22,28-33,309-325,355-364,365-375
3nda B:2-22,28-33,309-325,355-364,365-375
3kcg I:45-71,74-79,212-223,407-416,417-427
3kcg I:45-71,74-79,365-376,407-416,417-427
3eox A:2-28,30-35,318-330,357-366,367-377
2wy0 C:63-92,96-101,387-403,427-436,437-448
3f1s A:40-74,75-80,359-370,398-407,408-418
2p6w A:49-69,72-78,80-84,104-110,121-127
2wxz C:63-92,96-101,387-402,427-436,437-447
2wxz A:63-92,96-101,387-402,427-436,437-447
2wxy C:63-92,96-101,387-403,427-436,437-448
2wb7 B:277-290,401-407,410-418,494-511,513-525
2wb7 A:277-290,401-407,410-418,494-511,513-525
2pnq A:10-22,37-48,199-210,338-347,445-455
2pnq B:10-22,37-48,53-62,338-347,445-455
2pnq B:10-22,37-48,199-210,338-347,445-455
2pnq A:10-22,37-48,53-62,338-347,445-455
3i0l A:183-198,205-211,213-217,227-232,268-273
1xu8 B:0-24,26-31,316-327,353-362,363-373
1xu8 A:0-24,26-31,316-327,353-362,363-373
3ohm B:223-234,725-737,743-753,819-825,836-847
3ohm B:223-234,725-737,803-813,819-825,836-847
2ilm A:49-59,60-65,193-202,202-211,267-276
3f5n B:22-42,44-49,333-345,375-383,387-395
3f5n E:22-42,44-49,335-345,375-384,385-395
2vs3 B:194-214,219-225,227-231,241-246,282-287
2vs3 A:194-214,219-225,227-231,242-246,282-287
2rj4 A:180-193,205-211,213-217,227-232,268-273
2pef A:56-75,80-84,359-370,400-409,410-420
2rj7 A:180-193,205-211,213-217,227-232,268-273
3i0i X:186-199,205-211,213-217,227-232,268-273
3i0k A:185-200,205-211,213-217,227-232,268-273
2wxx D:63-92,96-101,264-270,427-436,437-448
2wxx C:63-92,96-101,387-403,427-436,437-448
3i0g A:185-198,205-211,213-217,227-232,268-273
3cf1 A:85-93,111-119,143-148,150-156,159-170
3cf1 C:85-93,111-119,143-148,150-156,159-170
3i0h A:186-199,205-211,213-217,227-232,268-273
2ffu A:203-215,219-224,226-230,246-252,309-314
2vdy B:16-37,39-44,317-333,360-369,370-380