1. c.131.1 Peptidyl-tRNA hydrolase II Peptidyl-tRNA hydrolase II 3 layers: a/b/a; mixed beta-sheet of 4 strands, order 2143, strand 4 is antiparallel to the rest 2gax d2gaxa1 A:4-11,15-35,58-63,111-120,120-129 2gax d2gaxb1 B:4-11,15-35,58-63,111-120,120-129 3erj d3erja1 A:3-11,16-35,49-56,91-100,100-111 3erj d3erjb1 B:3-12,16-35,49-57,91-100,100-108 1rlk d1rlka_ A:3-11,16-40,52-59,91-103,103-112 1q7s d1q7sa_ A:65-74,78-102,114-122,154-165,165-176 1q7s d1q7sb_ B:65-74,78-102,112-122,155-165,165-176 1rzw d1rzwa_ A:3-11,16-37,49-55,91-100,100-109 2. d.136.1 Phospholipase D/nuclease Phospholipase D/nuclease beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234 2o8r d2o8rb3 B:367-377,382-395,396-404,439-446,481-497 2o8r d2o8ra3 A:367-377,382-395,396-404,439-446,481-497 1bys d1bysa_ A:28-35,39-53,54-62,96-101,130-148 1xdo d1xdoa3 A:365-374,380-393,394-401,436-446,477-494 1xdo d1xdob3 B:365-374,380-393,394-401,436-446,477-494 1byr d1byra_ A:28-35,39-53,54-62,96-101,130-148 1xdo d1xdob4 B:531-539,542-556,557-565,593-601,630-647 1xdo d1xdoa4 A:531-539,542-556,557-565,593-601,630-647 1xdp d1xdpb3 B:365-374,380-393,394-401,437-446,477-494 1xdp d1xdpa3 A:365-374,380-393,394-401,437-446,477-494 2f5t d2f5tx2 X:133-139,147-158,159-166,189-196,220-238 1xdp d1xdpa4 A:531-539,542-556,557-565,594-601,630-647 1xdp d1xdpb4 B:531-539,542-556,557-565,594-601,630-647 1v0u d1v0ua2 A:335-342,355-369,370-377,450-455,480-492 1v0w d1v0wa2 A:335-342,355-369,370-377,450-455,480-492 1v0t d1v0ta2 A:335-342,355-369,370-377,450-455,480-492 1v0y d1v0ya2 A:335-342,355-369,370-377,450-455,480-492 1f0i d1f0ia2 A:335-342,355-369,370-377,450-455,480-492 1v0s d1v0sa2 A:335-342,355-369,370-377,450-455,480-492 1v0r d1v0ra2 A:335-342,355-369,370-377,450-455,480-492 1v0v d1v0va2 A:335-342,355-369,370-377,450-455,480-492 2o8r d2o8ra4 A:535-543,546-560,561-569,597-604,633-650 2o8r d2o8rb4 B:535-543,546-560,561-567,597-604,633-649 1f0i d1f0ia2 A:335-342,355-369,370-377,450-455,491-503 1v0s d1v0sa2 A:335-342,355-369,370-377,450-455,491-503 1v0t d1v0ta2 A:335-342,355-369,370-377,450-455,491-503 1v0w d1v0wa2 A:335-342,355-369,370-377,450-455,491-503 1v0u d1v0ua2 A:335-342,355-369,370-377,450-455,491-503 1v0y d1v0ya2 A:335-342,355-369,370-377,450-455,491-503 1v0r d1v0ra2 A:335-342,355-369,370-377,450-455,491-503 1v0v d1v0va2 A:335-342,355-369,370-377,450-455,491-503 1v0t d1v0ta1 A:83-91,95-113,115-124,172-177,208-230 1v0s d1v0sa1 A:83-91,95-113,115-124,172-177,208-230 1v0y d1v0ya1 A:83-91,95-113,115-124,172-177,208-230 1f0i d1f0ia1 A:83-91,95-113,115-124,172-177,210-233 1v0w d1v0wa1 A:83-91,95-113,115-124,172-177,210-233 1v0u d1v0ua1 A:83-91,95-113,115-124,172-177,210-233 1v0v d1v0va1 A:83-91,95-113,115-124,172-177,210-233 1v0r d1v0ra1 A:83-91,95-113,115-124,172-177,210-233 1rg1 d1rg1a1 A:195-204,207-216,222-229,261-272,318-331 1rgt d1rgtb1 B:195-204,207-216,222-229,261-272,318-331 1qzq d1qzqb1 B:195-204,207-216,222-229,261-272,318-331 1mu9 d1mu9b1 B:194-204,207-216,222-229,260-272,318-331 1nop d1nopb1 B:194-204,207-216,222-229,260-272,318-331 1nop d1nopa1 A:194-204,207-216,222-229,260-272,318-331 1mu7 d1mu7a1 A:194-204,207-216,222-229,260-272,318-331 1rh0 d1rh0a1 A:194-204,207-216,222-229,260-272,318-331 1rgu d1rgub1 B:195-204,207-216,222-229,260-272,318-331 1rgu d1rgua1 A:195-204,207-216,222-229,260-272,318-331 1jy1 d1jy1a1 A:195-204,207-216,223-229,260-272,318-331 1rg2 d1rg2b1 B:195-204,207-216,222-229,260-272,318-331 1rg2 d1rg2a1 A:195-204,207-216,222-229,260-272,318-331 1rg1 d1rg1b1 B:195-204,207-216,222-229,260-272,318-331 1qzq d1qzqa1 A:195-204,207-216,222-229,260-272,318-331 1rff d1rffb1 B:195-204,207-216,222-229,260-272,318-331 1rff d1rffa1 A:195-204,207-216,222-229,260-272,318-331 1mu7 d1mu7b1 B:195-204,207-216,222-229,260-272,318-331 1rfi d1rfia1 A:195-204,207-216,222-229,260-272,318-331 1rgt d1rgta1 A:195-204,207-216,222-229,260-272,318-331 1mu9 d1mu9a1 A:195-204,207-216,222-229,260-272,318-331 1rfi d1rfib1 B:195-204,207-216,222-229,260-272,318-331 1rh0 d1rh0b1 B:195-204,207-216,222-229,260-272,318-331 1q32 d1q32c1 C:113-122,126-133,138-146,179-191,231-245 1q32 d1q32b1 B:113-122,126-133,138-146,179-191,231-245 1q32 d1q32d1 D:113-122,126-133,138-146,179-191,231-245 1q32 d1q32a1 A:113-122,126-133,138-146,179-191,231-245 3. d.79.3 L30e-like Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest 3cma d3cmaf1 F:45-52,56-71,72-78,94-102,104-119 3cce d3ccef1 F:44-53,56-71,73-79,94-100,104-119 3cd6 d3cd6f1 F:45-53,56-71,73-79,94-99,104-119 1xbi d1xbia1 A:43-51,54-69,71-77,92-98,101-117 1ffk d1ffke_ E:45-53,56-71,73-79,94-102,104-119 1go0 d1go0a_ A:33-40,42-57,59-66,81-89,92-99 1e7k d1e7kb_ B:50-59,62-77,79-85,100-106,110-128 1e7k d1e7ka_ A:50-59,62-77,79-85,100-106,110-128 3cme d3cmef1 F:45-53,56-71,72-79,94-100,104-119 3ccm d3ccmf1 F:45-53,56-71,73-79,94-99,104-119 3cc4 d3cc4f1 F:45-53,56-71,73-79,94-99,104-119 3ccj d3ccjf1 F:45-53,56-71,73-79,94-102,104-119 3ccs d3ccsf1 F:45-53,56-71,73-79,94-99,104-119 3ccr d3ccrf1 F:45-53,56-71,73-79,94-99,104-119 1jj2 d1jj2f_ F:45-53,56-71,72-79,94-102,101-119 1qvf d1qvff_ F:45-53,56-71,72-79,94-102,101-119 1kc8 d1kc8h_ H:45-53,56-71,72-79,94-102,101-119 1kqs d1kqsf_ F:45-53,56-71,72-79,94-102,101-119 1k73 d1k73h_ H:45-53,56-71,72-79,94-102,101-119 1m1k d1m1kh_ H:45-53,56-71,72-79,94-102,104-119 1n8r d1n8rh_ H:45-53,56-71,72-79,94-102,101-119 1m90 d1m90h_ H:45-53,56-71,72-79,94-102,101-119 1s72 d1s72f_ F:45-53,56-71,72-79,94-102,101-119 1nji d1njih_ H:45-53,56-71,72-79,94-102,101-119 1q81 d1q81h_ H:45-53,56-71,72-79,94-102,104-119 1vql d1vqlf1 F:45-53,56-71,72-79,94-102,101-119 1q82 d1q82h_ H:45-53,56-71,72-79,94-102,101-119 1vqp d1vqpf1 F:45-53,56-71,72-79,94-102,101-119 1qvg d1qvgf_ F:45-53,56-71,72-79,94-102,104-119 1kd1 d1kd1h_ H:45-53,56-71,72-79,94-102,101-119 1yi2 d1yi2f1 F:45-53,56-71,72-79,94-102,101-119 3cpw d3cpwf1 F:45-53,56-71,72-79,94-102,101-119 1q86 d1q86h_ H:45-53,56-71,72-79,94-102,101-119 1q7y d1q7yh_ H:45-53,56-71,72-79,94-102,101-119 1yit d1yitf1 F:45-53,56-71,72-79,94-102,101-119 1vqo d1vqof1 F:45-53,56-71,72-79,94-102,101-119 1k8a d1k8ah_ H:45-53,56-71,72-79,94-102,101-119 1k9m d1k9mh_ H:45-53,56-71,72-79,94-102,101-119 1yij d1yijf1 F:45-53,56-71,72-79,94-102,101-119 1vq4 d1vq4f1 F:45-53,56-71,72-79,94-102,101-119 3ccq d3ccqf1 F:45-53,56-71,73-79,94-100,104-119 2otl d2otlf1 F:45-53,56-71,72-79,94-102,101-119 1vqn d1vqnf1 F:45-53,56-71,72-79,94-102,101-119 3cc7 d3cc7f1 F:45-53,56-71,73-79,94-102,104-119 2otj d2otjf1 F:45-53,56-71,73-79,94-102,101-119 1vq9 d1vq9f1 F:45-53,56-71,73-79,94-102,101-119 2qa4 d2qa4f1 F:45-53,56-71,72-79,94-102,104-119 1yjn d1yjnf1 F:45-53,56-71,72-79,94-102,101-119 1yhq d1yhqf1 F:45-53,56-71,72-79,94-102,101-119 1yjw d1yjwf1 F:45-53,56-71,72-79,94-102,104-119 2qex d2qexf1 F:45-53,56-71,72-79,94-102,104-119 1vq8 d1vq8f1 F:45-53,56-71,73-79,94-102,101-119 3ccl d3cclf1 F:45-53,56-71,73-79,94-102,104-119 3ccv d3ccvf1 F:45-53,56-71,73-79,94-102,104-119 3cc2 d3cc2f1 F:45-53,56-71,72-79,94-102,101-119 1vq6 d1vq6f1 F:45-53,56-71,73-79,94-102,101-119 1vqm d1vqmf1 F:45-53,56-71,73-79,94-102,104-119 2ozb d2ozbd1 D:50-59,62-77,79-85,100-106,110-128 1vqk d1vqkf1 F:45-53,56-71,73-79,94-102,101-119 1vq5 d1vq5f1 F:45-53,56-71,73-79,94-102,101-119 1vq7 d1vq7f1 F:45-53,56-71,73-79,94-102,101-119 3ccu d3ccuf1 F:45-53,56-71,73-79,94-102,104-119 1yj9 d1yj9f1 F:45-53,56-71,72-79,94-102,104-119 1sds d1sdsc_ C:43-51,54-69,71-77,92-98,101-116 1zwz d1zwza1 A:50-59,62-77,79-85,100-106,112-128 1zwz d1zwzb1 B:50-59,62-77,79-85,100-106,112-128 1sds d1sdsa_ A:43-51,54-69,71-77,92-98,101-116 2ozb d2ozba1 A:50-59,62-77,79-85,100-106,110-128 1rlg d1rlgb_ B:44-52,55-70,72-78,93-101,103-118 1rlg d1rlga_ A:44-52,55-70,72-78,93-101,103-119 1sds d1sdsb_ B:43-51,54-69,71-77,92-98,101-115 2aif d2aifa1 A:55-64,67-82,84-90,105-111,115-130 4. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1un8 d1un8b4 B:253-262,265-279,284-292,301-310,310-320 1un8 d1un8a4 A:253-262,265-279,284-292,301-310,310-320 1oi2 d1oi2b_ B:287-298,301-320,320-330,338-347,348-357 1oi3 d1oi3b_ B:287-298,301-320,320-330,338-347,348-357 1uod d1uodb_ B:287-298,301-320,320-330,338-347,348-357 1uoe d1uoeb_ B:287-298,301-320,320-330,338-347,348-357 1oi3 d1oi3a_ A:287-298,301-320,320-330,338-347,348-357 1oi2 d1oi2a_ A:287-298,301-320,320-330,338-347,348-357 1uoe d1uoea_ A:287-298,301-320,320-330,338-347,348-357 1uod d1uoda_ A:287-298,301-320,320-330,338-347,348-357 1un9 d1un9b4 B:253-262,265-279,287-292,301-310,311-321 1un9 d1un9a4 A:253-262,265-279,287-292,301-310,311-321 8. e.73.1 CV3147-like CV3147-like 2 domains; d1: [alpha/beta; 3 layers, a/b/a, mixed beta-sheet of 8 strands, order 12543876, strands 1, 7 and 8 are antiparallel to the rest]; d2: [pseudo beta-barrel of 6 strands, meander] 2o3i d2o3ib1 B:61-69,80-98,102-106,203-212,212-221 2o3i d2o3ia1 A:61-70,80-98,102-106,202-212,212-221