1. d.79.4 PurM N-terminal domain-like
Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
3d54 d3d54i1 I:100-112,115-130,131-141,148-160,398-406
3d54 d3d54a1 A:100-112,115-130,131-141,148-160,398-406
3d54 d3d54e1 E:100-112,115-130,131-141,148-160,398-406
2hs4 d2hs4a1 A:100-112,115-130,132-141,148-160,397-406
2hry d2hrya1 A:100-112,115-130,131-141,148-160,435-447
2hru d2hrua1 A:100-112,115-130,131-141,148-160,397-406
2hs0 d2hs0a1 A:100-112,115-130,131-141,148-160,435-447
2hs3 d2hs3a1 A:100-112,115-130,131-141,148-160,435-447
2hry d2hrya1 A:100-112,115-130,131-141,148-160,397-406
1vk3 d1vk3a1 A:103-112,115-130,131-141,148-160,435-447
2hs0 d2hs0a1 A:100-112,115-130,131-141,148-160,397-406
2hru d2hrua1 A:100-112,115-130,131-141,148-160,435-447
3d54 d3d54a1 A:100-112,115-130,131-141,148-160,435-447
3d54 d3d54i1 I:100-112,115-130,131-141,148-160,435-447
3d54 d3d54e1 E:100-112,115-130,131-141,148-160,435-447
2hs3 d2hs3a1 A:100-112,115-130,131-141,148-160,397-406
2hs4 d2hs4a1 A:100-112,115-130,132-141,148-160,435-447
1t3t d1t3ta4 A:326-339,361-381,383-393,410-421,690-699
1t3t d1t3ta4 A:326-339,361-381,383-393,410-421,663-667
1vk3 d1vk3a1 A:103-112,115-130,131-141,148-160,397-406
1t3t d1t3ta4 A:326-339,361-381,383-393,410-421,733-743
2. d.104.1 Class II aaRS and biotin synthetases
Class II aaRS and biotin synthetases contains large mixed beta-sheet
2c8m d2c8md1 D:42-49,58-66,67-72,75-83,84-94
2c8m d2c8ma1 A:42-49,58-66,67-72,75-83,84-94
2c8m d2c8mc1 C:42-49,58-66,67-72,75-83,84-94
2p0l d2p0la1 A:56-61,69-81,82-87,92-97,99-109
2art d2arta1 A:42-49,58-66,67-72,75-83,84-94
2c8m d2c8mb1 B:42-49,58-66,67-72,75-83,84-94
2c7i d2c7ib1 B:42-49,58-66,67-72,75-83,84-94
1vqz d1vqza2 A:38-45,54-62,63-68,74-79,80-90
3. c.8.4 PA domain
The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
2c6g d2c6ga2 A:173-178,181-193,199-205,327-332,340-347
2oot d2oota2 A:173-178,181-193,199-205,327-332,339-347
3bhx d3bhxa2 A:173-178,181-193,199-205,327-331,339-347
3bi0 d3bi0a2 A:173-178,181-193,199-205,327-331,339-347
2pvw d2pvwa2 A:173-178,181-193,199-205,327-332,339-347
2cij d2cija2 A:173-178,181-193,199-205,327-332,339-347
4. d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain N-terminal domain is the classic Rossmann-fold !
FwdE/GAPDH domain-like core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
1nvm d1nvmb2 B:149-161,171-188,190-200,207-216,257-261
1nvm d1nvmh2 H:149-161,171-188,190-200,206-216,257-261
5. d.136.1 Phospholipase D/nuclease
Phospholipase D/nuclease beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
2f5t d2f5tx2 X:133-139,147-158,159-166,189-196,248-255
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 745 (enumeration index: query1687.1703) of S5
3s9n A:231-236,239-246,251-259,363-367,370-378
3fee A:163-168,171-183,189-195,317-321,330-337
3a7a A:40-47,56-64,65-70,73-81,82-92
3a7a C:40-47,56-64,65-70,73-81,82-92
3sjf A:173-178,181-193,199-205,327-331,339-347
3fed A:163-168,171-183,189-195,317-321,330-337
2qht A:42-49,59-67,68-73,77-84,84-95
2qhu A:42-49,59-67,68-73,79-84,84-95
2qhu A:42-49,59-67,68-73,79-84,134-146
2qhs A:42-49,59-67,68-73,77-84,134-146
3iww A:173-178,181-193,199-205,327-332,339-347
3s9m A:231-236,239-246,251-258,363-367,371-378
3sjx A:173-178,181-193,199-205,327-332,339-347
2xej A:173-178,181-193,199-205,327-331,339-347
2e5a A:43-50,59-67,68-73,76-84,85-94
3a7r A:40-47,56-64,65-70,73-81,82-92
3d7g A:173-178,181-193,199-205,327-332,339-347
3d7f A:173-178,181-193,199-205,327-331,339-347
3d7d A:173-178,181-193,199-205,327-331,339-347
3ac6 A:115-128,131-153,155-165,171-183,478-490
3ac6 A:115-128,131-153,155-165,171-183,440-449
3fec A:163-168,171-183,189-195,317-321,330-337
2qhv A:42-49,59-67,68-73,77-84,134-146
2qhv A:42-49,59-67,68-73,77-84,85-95
3d7h A:173-178,181-193,199-205,327-332,339-347
3kfk A:229-237,267-280,282-287,337-341,341-349
3bxm A:173-178,181-193,199-205,327-332,339-347
3sje A:173-178,181-193,199-205,327-331,339-347
3ff3 A:163-168,171-183,189-195,317-321,330-337