1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
8ohm d8ohma1 A:224-229,231-247,250-255,256-261,264-269
1cu1 d1cu1a2 A:224-229,231-247,250-255,256-261,264-269
1cu1 d1cu1b2 B:1224-1229,1231-1247,1250-1255,1256-1261,1264-1269
1a1v d1a1va1 A:224-229,231-247,250-255,256-260,264-269
1hei d1heia1 A:224-229,231-247,250-255,256-260,264-269
2. c.72.2 MurD-like peptide ligases, catalytic domain has extra strand located between strands 1 and 2 !
Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites
1p3d d1p3db3 B:118-126,128-144,146-151,161-166,168-174
1e8c d1e8cb3 B:108-116,118-134,136-142,143-148,177-183
1e8c d1e8ca3 A:108-116,118-134,136-142,143-148,177-183
1o5z d1o5za2 A:40-48,47-66,68-73,83-87,138-144
2gca d2gcaa2 A:40-47,46-65,67-72,82-86,138-144
1jbw d1jbwa2 A:40-47,49-65,67-72,82-86,138-144
2gcb d2gcba2 A:40-47,46-65,67-72,82-86,138-144
2gc6 d2gc6a2 A:40-47,49-65,67-72,82-86,138-144
1fgs d1fgsa2 A:40-47,46-65,67-72,82-86,138-144
1jbv d1jbva2 A:40-47,49-65,67-72,82-86,138-144
2gc5 d2gc5a2 A:40-47,46-65,67-74,82-86,138-144
3. c.68.1 Nucleotide-diphospho-sugar transferases
Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
1vm8 d1vm8b_ B:76-80,261-272,274-282,329-334,391-397
1jvd d1jvda_ A:76-80,261-272,274-282,329-334,391-397
1vm8 d1vm8a_ A:76-80,261-272,274-282,329-334,391-397
2icx d2icxb2 B:56-60,229-240,242-250,296-300,345-351
1z90 d1z90b2 B:56-60,229-240,242-250,296-300,345-351
2q4j d2q4ja2 A:56-60,229-240,242-250,296-300,345-351
1z90 d1z90a2 A:56-60,229-240,242-250,296-300,345-351
2q4j d2q4jb2 B:56-60,229-240,242-250,296-300,345-351
4. d.115.1 YrdC/RibB
YrdC/RibB core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
1k7j d1k7ja_ A:2-7,13-27,29-35,36-43,169-174
1kk9 d1kk9a_ A:2-7,13-27,29-35,36-43,169-174
5. d.118.1 N-acetylmuramoyl-L-alanine amidase-like
N-acetylmuramoyl-L-alanine amidase-like contains mixed beta-sheet
2f2l d2f2lx1 X:359-367,373-393,400-405,407-412,429-436
1lba d1lbaa_ A:12-20,28-40,47-52,54-59,75-83
2cb3 d2cb3b1 B:200-208,214-234,241-246,248-253,270-277
2cb3 d2cb3c1 C:200-208,214-234,241-246,248-253,270-277
1yck d1ycka1 A:34-42,48-68,75-80,82-87,105-112
2f2l d2f2la1 A:378-386,392-412,419-424,426-431,450-457
1sxr d1sxrb_ B:36-44,50-70,77-82,84-89,106-113
1sxr d1sxra_ A:36-44,50-70,77-82,84-89,106-113
2aph d2aphb1 B:202-210,216-236,243-248,250-255,271-279
1s2j d1s2jb_ B:36-44,50-70,77-82,84-89,106-113
1sk4 d1sk4a_ A:202-210,216-236,243-248,250-255,271-279
2cb3 d2cb3a1 A:200-208,214-234,241-246,248-253,269-277
2aph d2apha1 A:202-210,216-236,243-248,250-255,271-279
2cb3 d2cb3d1 D:200-208,214-234,241-246,248-253,269-277
1oht d1ohta_ A:37-45,52-72,79-84,86-91,107-115
1sk3 d1sk3a_ A:202-210,216-236,243-248,250-255,271-279
1twq d1twqa_ A:202-210,216-236,243-248,250-255,271-279
1s2j d1s2ja_ A:36-44,50-70,77-82,84-90,106-113
2ar3 d2ar3b1 B:24-31,36-48,54-59,60-66,85-92
2ar3 d2ar3c1 C:24-31,36-48,54-59,60-66,85-92
1yb0 d1yb0c1 C:24-31,36-48,54-59,60-66,85-92
1aro d1arol_ L:1012-1019,1028-1040,1047-1052,1054-1059,1075-1082
1yb0 d1yb0a1 A:24-31,36-47,54-59,60-66,85-92
1yb0 d1yb0b1 B:24-31,36-47,54-59,60-66,85-92
2ar3 d2ar3a1 A:24-31,36-47,54-59,60-66,85-92
6. b.49.2 Alanine racemase C-terminal domain-like the barrel is decorated with additional structures !
Domain of alpha and beta subunits of F1 ATP synthase-like barrel, closed; n=6, S=8; greek-key
1d7k d1d7ka1 A:10-14,19-32,39-44,283-297,403-410
7odc d7odca1 A:8-14,19-29,39-44,283-297,403-410
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 749 (enumeration index: query1735.1736) of S5
3tru B:31-39,45-65,72-77,79-85,102-109
3tru D:31-39,45-65,72-77,79-84,102-109
3tru C:31-39,45-65,72-77,79-84,102-109
3lat B:55-62,68-80,86-91,92-98,114-121
3lat A:55-62,68-80,86-91,92-98,114-121
2npi A:123-130,135-152,154-163,171-179,246-253
2npi B:123-130,135-152,154-161,171-179,246-253
3t39 D:31-39,45-65,72-77,79-84,102-109
3t39 C:31-39,45-65,72-77,79-84,102-110
3t39 A:31-39,45-65,72-77,79-84,102-109
3qcz A:49-57,59-75,77-82,92-96,141-147
2y28 A:29-37,45-54,75-80,82-87,111-119
2y28 B:29-37,45-54,75-80,82-87,111-119
2y28 C:29-37,45-54,75-80,82-87,111-119
1w78 A:49-57,59-75,77-82,92-96,141-147
3cxa D:31-39,45-65,72-77,79-84,102-109
3cxa C:31-39,45-65,72-77,79-84,102-109
3cxa A:31-39,45-65,72-77,79-84,102-109
2zjo A:224-229,231-247,250-255,256-260,264-269
3rc8 A:226-231,233-248,251-256,257-261,270-275
3o3p A:21-25,142-157,160-168,209-214,245-254
3kql B:224-229,231-247,250-255,256-260,264-269
3kql A:224-229,231-247,250-255,256-261,264-269
3cor C:31-39,45-65,72-77,79-84,102-109
3cor B:31-39,45-65,72-77,79-85,102-109
3cor D:31-39,45-65,72-77,79-84,102-109
3oh2 A:87-91,279-291,293-300,361-365,419-425
3rdr A:27-34,42-52,60-65,66-72,91-98
2y2c B:29-37,45-54,75-80,82-87,111-119
2y2c A:29-37,45-54,75-80,82-87,111-119
2y2c C:29-37,45-54,75-80,82-87,111-119
2y2d A:29-37,45-54,75-80,82-87,111-119
2y2d C:29-37,45-54,75-80,82-87,111-119
2y2d B:29-37,45-54,75-80,82-87,111-119
3kqn A:224-229,231-247,250-255,256-260,264-269
2f55 B:224-229,231-247,250-255,256-261,264-269
2f55 C:224-229,231-247,250-255,256-260,264-269
2f55 A:224-229,231-247,250-255,256-261,264-269
2xja B:146-154,156-172,174-180,181-186,215-221
2xja A:146-154,156-172,174-180,181-186,215-221
2xja C:146-154,156-172,174-180,181-186,215-221
2xja D:146-154,156-172,174-180,181-186,215-221
2oo0 B:10-14,19-35,39-44,283-297,403-410
2oo0 A:10-14,19-35,39-44,283-297,403-410
2f00 A:119-127,129-145,147-152,162-167,169-175
2f00 B:119-127,129-145,147-152,162-167,169-175
3o8d A:224-229,231-242,250-255,256-260,264-269
3o8d B:224-229,237-247,250-255,256-260,264-269
3pyz A:49-57,59-75,77-82,92-96,141-147
3nno B:31-39,45-65,72-77,79-84,102-109
3nno D:31-39,45-65,72-77,79-84,102-109
3nno C:31-39,45-65,72-77,79-84,102-109
3nno A:31-39,45-65,72-77,79-84,102-109
3ds8 A:4-11,19-31,35-43,45-51,59-67
3o8r B:224-229,231-247,250-255,256-261,264-269
3o8r A:224-229,238-247,250-255,256-260,264-269
3hmb C:24-31,39-50,57-62,63-69,88-95
3hmb A:24-32,39-49,57-62,63-69,88-96
3hmb B:24-31,39-49,57-62,63-69,88-95
2rkq A:36-44,50-70,77-82,84-89,105-113
2plj A:3-7,19-34,36-41,279-293,382-387
3o4k C:31-39,45-65,72-77,79-84,102-109
3o4k D:31-39,45-65,72-77,79-84,102-109
3o4k A:31-39,45-65,72-77,79-84,102-109
3uml C:31-39,45-65,72-77,79-84,102-109
3uml A:31-39,45-65,72-77,79-84,102-109
3uml D:31-39,45-65,72-77,79-84,102-109
3hn7 A:103-111,113-129,132-136,156-160,173-179
2yqj B:76-80,265-276,278-286,337-342,405-411
2yqj A:76-80,265-276,278-286,337-342,405-411
2y2b B:29-37,45-54,75-80,82-87,111-119
2y2b C:29-37,45-54,75-80,82-87,111-119
2y2b A:29-37,45-54,75-80,82-87,111-119
3cg9 D:31-39,45-65,72-77,79-84,102-109
3cg9 C:31-39,45-65,72-77,79-84,102-110
3cg9 A:31-39,45-65,72-77,79-84,102-109
2eax B:234-242,248-268,275-280,282-287,303-311
2eax C:234-242,248-268,275-280,282-287,303-311
2eax A:234-242,248-268,275-280,282-287,303-311
2vor A:67-73,76-92,94-99,109-113,171-177
3c2x B:31-39,45-65,72-77,79-84,102-109
3c2x C:31-39,45-65,72-77,79-84,102-109
3c2x D:31-39,45-65,72-77,79-84,102-109
3c2x A:31-39,45-65,72-77,79-84,102-109
1w7k A:49-57,59-75,77-82,92-96,141-147
2y2e B:29-36,45-54,75-80,82-87,111-118
2y2e C:29-37,45-54,75-80,82-87,111-119
2y2e A:29-37,45-54,75-80,82-87,111-119
2z9n C:31-39,45-65,72-77,79-84,102-109
2z9n B:31-39,45-65,72-77,79-84,102-109
2z9n A:31-39,45-65,72-77,79-84,102-109
2z9n D:31-39,45-65,72-77,79-84,102-109
2eav B:234-242,248-268,275-280,282-287,303-311
2wvm A:14-19,172-191,194-201,251-255,297-305
2wvm A:20-25,172-191,194-201,251-255,297-305
2wvm B:20-25,172-191,194-201,251-255,297-305
2wvm B:14-19,172-191,194-201,251-255,297-305
3ogz A:87-91,279-291,293-300,361-365,419-425
2wvk B:14-25,172-191,194-201,251-255,297-305
2wvk A:20-25,172-191,194-201,251-255,297-305
2wvk A:14-19,172-191,194-201,251-255,297-305
2zu8 B:20-25,173-192,195-202,251-255,298-306
2zu8 A:14-19,173-192,195-202,251-256,298-306
2zu8 A:20-25,173-192,195-202,251-256,298-306
2zu8 B:14-19,173-192,195-202,251-255,298-306
3btn B:9-15,20-36,39-44,280-292,401-408
3btn A:9-15,20-36,39-44,280-293,401-408
2zu9 B:20-25,173-191,195-202,251-255,298-306
2zu9 A:14-19,173-192,195-202,251-255,298-306
2zu9 B:14-19,173-191,195-202,251-255,298-306
2zu9 A:20-25,173-192,195-202,251-255,298-306
2yqc A:76-80,265-276,278-286,338-342,405-411
3nkw B:31-39,45-65,72-77,79-84,102-109
3nkw C:31-39,45-65,72-77,79-84,102-109
3nkw D:31-39,45-65,72-77,79-84,102-109
3nkw A:31-39,45-65,72-77,79-84,102-109
3olk C:31-39,45-65,72-77,79-84,102-109
3olk D:31-39,45-65,72-77,79-84,102-109
3olk A:31-39,45-65,72-77,79-84,102-109
2r90 C:31-39,45-65,72-77,79-84,102-109
2r90 B:31-39,45-65,72-77,79-85,102-109
2r90 A:31-39,45-65,72-77,79-84,102-109
2r90 D:31-39,45-65,72-77,79-84,102-109
3oh3 A:87-91,279-291,293-300,361-365,419-425
3aje A:2-7,13-27,29-35,36-44,168-173
2xz8 B:259-266,273-293,300-305,307-313,327-333
2xz8 A:259-266,273-293,300-305,307-313,327-334
2i5k A:84-88,253-264,266-274,320-324,373-379
2l47 A:24-31,36-47,54-59,60-66,85-92
2xgj B:194-199,201-217,218-224,225-229,233-238
2xgj A:194-199,201-217,218-224,225-229,233-238
3kqh B:224-229,231-247,250-255,256-260,264-269
3kqh A:224-229,231-247,250-255,256-260,264-269
3rt4 B:31-39,45-65,72-77,79-84,102-109
3rt4 C:31-39,45-65,72-77,79-84,102-109
3rt4 D:31-39,45-65,72-77,79-84,102-109
3rt4 A:31-39,45-65,72-77,79-84,102-109
2yqh A:76-80,265-276,278-286,337-342,405-411
2yqh B:76-80,265-276,278-286,337-342,405-411
3qj1 B:31-39,45-65,72-77,79-85,102-109
3qj1 D:31-39,45-65,72-77,79-84,102-109
3qj1 C:31-39,45-65,72-77,79-84,102-109
3tr5 B:133-140,147-160,161-171,174-183,246-256
3tr5 A:133-140,147-160,161-171,174-183,246-256
3fle B:46-54,57-72,76-84,86-92,100-109
3fle A:46-54,57-72,76-84,86-92,100-109
2yqs A:76-80,265-276,278-286,337-342,405-411
3o8b A:224-229,231-247,250-255,256-260,264-269
3o8b B:224-229,231-247,250-255,256-260,264-269
3l9o A:194-199,201-217,218-224,225-229,233-238
3oh1 A:87-91,279-291,293-300,361-365,419-425
2wvl B:20-25,172-191,194-201,251-255,297-305
2wvl A:14-19,172-191,194-201,251-255,297-305
2wvl A:20-25,172-191,194-201,251-255,297-305
2wvl B:14-19,172-191,194-201,251-255,297-305
2on3 B:10-14,19-35,39-44,283-297,403-410
2on3 A:10-14,19-35,39-44,283-297,403-410
3kqu B:224-229,231-247,250-255,256-260,264-269
3kqu F:224-229,231-247,250-255,256-260,264-269
3kqu E:224-229,231-247,250-255,256-260,264-269
3kqu D:224-229,231-247,250-255,256-260,264-269
3kqu A:224-229,231-247,250-255,256-260,264-269
3kqu C:224-229,231-247,250-255,256-260,264-269
3oh4 A:87-91,279-291,293-300,361-365,419-425
3oh0 A:87-91,279-291,293-300,361-365,419-425
2xz4 B:82-90,96-116,123-128,130-136,152-159
2xz4 A:82-90,96-116,123-128,130-135,152-159
3kqk B:224-229,231-247,250-255,256-260,264-269
3kqk A:224-229,231-247,250-255,256-260,264-269
2zu7 A:14-19,173-192,195-202,251-255,298-306
2zu7 B:14-19,173-192,195-202,251-255,298-306
2zu7 A:20-25,173-192,195-202,251-255,298-306
2zu7 B:20-25,173-192,195-202,251-255,298-306
3eag A:105-113,115-131,131-138,148-156,164-170
3eag B:105-113,115-131,131-138,148-156,164-170
3ogx B:31-39,45-65,72-77,79-85,102-109
3ogx D:31-39,45-65,72-77,79-84,102-109
3ogx A:31-39,45-65,72-77,79-84,102-109
3ogx C:31-39,45-65,72-77,79-84,102-109
3ng4 B:31-39,45-65,72-77,79-84,102-109
3ng4 C:31-39,45-65,72-77,79-84,102-109
3ng4 D:31-39,45-65,72-77,79-84,102-109
3ng4 A:31-39,45-65,72-77,79-84,102-109
3n2a A:49-57,59-75,77-82,92-96,141-147
3o8c A:224-229,231-247,250-255,256-260,264-269
3o8c B:224-229,231-247,250-255,256-260,264-269
3qs0 C:31-39,45-65,72-77,79-84,102-109
3qs0 D:31-39,45-65,72-77,79-84,102-109
3qs0 A:31-39,45-65,72-77,79-84,102-109
3jux A:118-123,125-137,146-152,154-162,216-221
3qv4 C:31-39,45-65,72-77,79-84,102-109
3qv4 D:31-39,45-65,72-77,79-84,102-109
3qv4 A:31-39,45-65,72-77,79-84,102-109
2eqa A:2-7,13-27,29-35,36-44,168-173
2wtz A:146-154,156-172,174-180,181-186,215-221
2wtz C:146-154,156-172,174-180,181-186,215-221
2wtz B:146-154,156-172,174-180,181-186,215-221
2wtz D:146-154,156-172,174-180,181-186,215-221
3nrs A:49-57,59-75,77-82,92-96,141-147
3lp5 A:3-11,12-31,35-43,45-52,58-67
2vos A:67-74,76-92,94-99,109-113,171-177
3rc3 A:226-231,233-248,251-256,257-262,270-275
3t2v C:31-39,45-65,72-77,79-84,102-109
3t2v D:31-39,45-65,72-77,79-84,102-109
3t2v A:31-39,45-65,72-77,79-84,102-109
3nw3 B:31-39,45-65,72-77,79-85,102-109
3nw3 C:31-39,45-65,72-77,79-84,102-109
3nw3 D:31-39,45-65,72-77,79-84,102-109
3nw3 A:31-39,45-65,72-77,79-84,102-109
3ep1 A:100-109,130-147,154-159,161-166,183-191
3ep1 B:100-109,130-147,154-159,161-166,183-190
2r2k C:31-39,45-65,72-77,79-84,102-109
2r2k A:31-39,45-65,72-77,79-84,102-109
2r2k D:31-39,45-65,72-77,79-84,102-109
3din A:118-123,125-137,146-152,153-160,216-221
3din B:118-123,125-137,146-152,153-160,216-221