1. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1pm7 d1pm7b_ B:1-6,10-16,31-40,97-105,109-115
2ixc d2ixcd1 D:1-6,10-16,31-40,97-105,109-116
1pm7 d1pm7a_ A:1-6,10-16,31-40,96-105,109-116
2ixc d2ixca1 A:1-6,10-16,31-40,96-105,109-116
2ixc d2ixcb1 B:1-6,10-16,31-40,96-105,109-115
1nxm d1nxmb_ B:9-15,20-27,41-49,106-114,116-123
2ixj d2ixja1 A:3-9,14-20,34-43,99-107,111-117
2ixh d2ixha1 A:3-9,14-20,34-43,99-107,111-117
1nzc d1nzcd_ D:9-15,20-27,41-49,105-114,116-124
2ixl d2ixlb1 B:9-15,20-27,41-49,106-114,116-124
1ep0 d1ep0a_ A:3-9,13-20,34-42,98-106,110-117
1nzc d1nzca_ A:9-15,20-27,41-49,105-114,116-124
2ixh d2ixhb1 B:3-9,14-20,34-43,99-107,111-117
2ixl d2ixld1 D:9-15,20-27,41-49,106-114,116-124
2ixl d2ixla1 A:9-15,20-27,41-49,105-114,116-124
1dzt d1dzta_ A:1-7,12-18,32-41,98-106,110-116
1dzr d1dzra_ A:1-7,12-18,32-41,98-106,110-116
1nxm d1nxma_ A:7-15,20-28,41-49,106-114,116-123
1epz d1epza_ A:3-9,13-20,34-42,96-106,110-117
1nzc d1nzcb_ B:7-15,20-28,41-49,106-114,116-123
1nzc d1nzcc_ C:7-15,20-28,41-49,105-114,116-123
2ixl d2ixlc1 C:7-15,20-28,41-49,106-114,116-123
1nyw d1nywb_ B:7-15,20-28,41-49,105-114,116-124
1nyw d1nywa_ A:7-15,20-28,41-49,105-114,116-124
2c0z d2c0za1 A:-2-6,10-22,31-40,97-105,109-115
2. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
2btv d2btvb_ B:89-94,99-106,167-175,726-730,857-863
2btv d2btva_ A:89-94,100-106,167-175,726-730,857-862
1uf2 d1uf2b_ B:71-80,89-98,165-174,794-800,966-970
1uf2 d1uf2a_ A:71-80,89-98,165-174,794-800,966-970
3. d.145.1 FAD-binding/transporter-associated domain-like
FAD-binding/transporter-associated domain-like consists of two alpha+beta subdomains
3ded d3dedf1 F:342-347,349-355,358-367,411-415,419-426
3ded d3dede1 E:342-347,349-355,358-367,411-415,419-426
3ded d3deda1 A:342-347,349-355,358-367,411-415,419-426
2nqw d2nqwa1 A:5-10,12-18,21-30,74-78,82-88
3ded d3dedc1 C:342-347,349-355,358-367,411-415,419-426
3ded d3dedd1 D:342-347,349-355,358-367,411-415,419-426
3ded d3dedb1 B:342-347,349-355,358-367,411-415,419-426
2pls d2plsi1 I:344-349,351-357,360-369,412-416,420-427
2r2z d2r2za1 A:6-10,13-19,22-31,72-76,80-87
2pls d2plsa1 A:344-349,351-357,360-369,412-416,420-427
2pls d2plsh1 H:344-349,351-357,360-369,412-416,420-427
2p13 d2p13a1 A:434-439,441-447,450-459,500-504,508-515
2pls d2plsd1 D:344-349,351-357,360-369,412-416,420-427
2pls d2plsj1 J:344-349,351-357,360-369,412-416,420-427
2pls d2plsg1 G:344-349,351-357,360-369,412-416,420-427
2rk5 d2rk5a1 A:3-7,10-16,19-28,73-77,81-88
2p13 d2p13b1 B:434-439,441-447,450-459,500-504,508-515
2pls d2plsl1 L:344-349,351-357,360-369,412-416,420-427
2pls d2plsf1 F:344-349,351-357,360-369,412-416,420-427
2pls d2plsc1 C:344-349,351-357,360-369,412-416,420-427
2pls d2plsk1 K:344-349,351-357,360-369,412-416,420-427
2pls d2plsb1 B:344-349,351-357,360-369,412-416,420-427
2pls d2plse1 E:344-349,351-357,360-369,412-416,420-427
2p3h d2p3ha1 A:6-10,13-19,22-31,87-91,95-102
3ded d3dedf1 F:342-347,349-355,382-392,411-415,419-426
3ded d3dedd1 D:342-347,349-355,382-392,411-415,419-426
3ded d3deda1 A:342-347,349-355,382-392,411-415,419-426
3ded d3dedb1 B:342-347,349-355,382-392,411-415,419-426
3ded d3dede1 E:342-347,349-355,382-392,411-415,419-426
3ded d3dedc1 C:342-347,349-355,382-392,411-415,419-426
2nqw d2nqwa1 A:5-10,12-18,45-55,74-78,82-88
2r2z d2r2za1 A:6-10,13-19,41-51,72-76,80-87
2pls d2plsi1 I:344-349,351-357,383-393,412-416,420-427
2pls d2plsa1 A:344-349,351-357,383-393,412-416,420-427
2rk5 d2rk5a1 A:3-7,10-16,38-48,73-77,81-88
2p13 d2p13a1 A:434-439,441-447,471-481,500-504,508-515
2pls d2plsh1 H:344-349,351-357,383-393,412-416,420-427
2pls d2plsd1 D:344-349,351-357,383-393,412-416,420-427
2pls d2plsj1 J:344-349,351-357,383-393,412-416,420-427
2p13 d2p13b1 B:434-439,441-447,471-481,500-504,508-515
2pls d2plsl1 L:344-349,351-357,383-393,412-416,420-427
2pls d2plsg1 G:344-349,351-357,383-393,412-416,420-427
2pls d2plsc1 C:344-349,351-357,383-393,412-416,420-427
2pls d2plsf1 F:344-349,351-357,383-393,412-416,420-427
2pls d2plsb1 B:344-349,351-357,383-393,412-416,420-427
2pls d2plsk1 K:344-349,351-357,383-393,412-416,420-427
2pls d2plse1 E:344-349,351-357,383-393,412-416,420-427
4. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1xqg d1xqga_ A:212-222,225-234,251-260,344-350,353-362
1k9o d1k9oi_ I:226-234,238-247,248-262,359-363,366-374
1oc0 d1oc0a_ A:218-229,232-241,246-255,269-277,357-366
1jmj d1jmja_ A:321-331,333-342,343-354,447-452,455-464
1jmj d1jmjb_ B:321-331,333-342,343-354,447-452,455-464
1k9o d1k9oi_ I:226-234,238-247,261-272,359-363,366-374
1dvm d1dvmb_ B:218-229,232-241,246-254,350-354,357-366
1jmj d1jmja_ A:321-331,333-342,355-366,447-452,455-464
1jmj d1jmja_ A:321-331,333-342,355-366,370-377,455-464
1jmj d1jmjb_ B:321-331,333-342,355-366,447-452,455-464
1jmj d1jmjb_ B:321-331,333-342,355-366,370-377,455-464
1oc0 d1oc0a_ A:218-229,232-241,246-255,350-354,357-366
1dvm d1dvmb_ B:218-229,232-241,255-266,350-354,357-366
2b5t d2b5ti1 I:266-274,278-287,300-311,365-377,407-416
5. b.19.1 Viral protein domain forms homotrimers !
Viral protein domain sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
1ahs d1ahsa_ A:147-154,156-165,169-176,193-197,238-251
6. d.194.1 CNF1/YfiH-like putative cysteine hydrolases
CNF1/YfiH-like putative cysteine hydrolases 4 layers: alpha/beta/beta/alpha; mixed beta sheets
1t8h d1t8ha_ A:11-16,23-29,51-67,135-144,262-269
1t8h d1t8ha_ A:11-16,23-29,51-67,171-176,262-269
1rv9 d1rv9a_ A:16-20,27-34,56-72,159-166,247-255
1rv9 d1rv9a_ A:16-20,27-34,56-72,130-137,247-255
1xaf d1xafb_ B:3-7,14-21,43-59,148-155,235-243
1rw0 d1rw0a_ A:3-7,14-21,43-59,148-154,235-243
1xaf d1xafb_ B:3-7,14-21,43-59,119-126,235-243
1rw0 d1rw0a_ A:3-7,14-21,43-59,119-126,235-243
7. d.79.9 BB2672-like contains extra N-terminal strand and a beta-hairpin insertion between strands 3 and 4 that packs against the main beta-sheet
Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
2qtp d2qtpa1 A:3-15,25-37,47-70,146-152,159-171
3byq d3byqa1 A:5-17,27-39,90-110,144-151,158-169
3byq d3byqa1 A:5-17,27-39,48-72,144-151,158-169
3byq d3byqc1 C:5-17,27-39,48-72,144-154,158-170
3byq d3byqb1 B:5-17,27-38,48-72,144-154,158-170
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 611 (enumeration index: query1755.2306.2441) of S5
3itq B:27-37,40-46,89-104,164-170,172-180
3itq A:27-37,40-46,89-104,164-170,172-180
2cj9 A:324-330,353-361,361-385,447-452,457-465
2cj9 B:324-330,353-361,361-385,447-452,457-465
3som A:20-27,47-56,77-95,147-151,157-167
3som K:20-27,47-56,77-95,147-151,157-167
3som C:20-27,47-56,77-95,147-151,157-167
3som L:20-27,47-56,77-95,147-151,157-167
3som E:20-27,47-56,77-95,147-151,157-167
3som M:20-27,47-56,77-95,147-151,157-167
3som H:20-27,47-56,77-95,147-151,157-167
3som O:20-27,47-56,77-95,147-151,157-167
3som D:20-27,47-56,77-95,147-151,157-167
3som F:20-27,47-56,77-95,147-151,157-167
3som I:20-27,47-56,77-95,147-151,157-167
3som N:20-27,47-56,77-95,147-151,157-167
3som G:20-27,47-56,77-95,147-151,157-167
3som J:20-27,47-56,77-95,147-151,157-167
3som B:20-27,47-56,77-95,147-151,157-167
3som P:20-27,47-56,77-95,147-151,157-167
3khc A:10-16,17-24,93-108,163-173,172-181
3khc B:10-16,17-24,93-108,163-173,172-181
3i3q B:12-16,17-24,93-108,163-173,172-181
3lae A:-1-4,6-12,15-24,63-67,71-78
2ixk A:3-9,14-20,34-43,99-107,111-117
2ixk B:3-9,14-20,34-43,99-107,111-117
3llb A:2-7,9-15,18-27,66-70,74-81
3llb A:2-7,9-15,37-47,66-70,74-81
2v4a B:40-47,50-56,105-120,198-203,206-214
2v4a A:40-47,50-56,105-120,199-203,206-214
2v4a C:40-47,50-56,105-120,199-203,206-214
2o2k A:1026-1041,1095-1106,1119-1151,1207-1211,1213-1223
3fgq B:237-246,250-258,272-283,367-372,375-384
3fgq A:237-246,250-258,263-271,367-372,375-384
3fgq A:237-246,250-258,272-283,367-372,375-384
3fgq B:237-246,250-258,263-271,367-372,375-384
2cim B:324-330,353-361,361-385,447-452,457-465
2b9u C:2-9,11-18,32-40,96-104,107-113
2b9u H:2-9,11-18,32-40,96-104,107-113
2b9u E:2-9,11-18,32-40,96-104,108-113
1wz9 B:212-222,225-234,251-260,344-350,353-362
1wz9 A:212-222,225-234,251-260,344-350,353-362
1wz9 B:212-222,225-234,241-250,344-350,353-362
2ixi A:0-6,11-17,31-40,96-104,108-114
2ixi B:0-6,11-17,31-40,96-104,108-114
3lcb B:322-328,332-339,349-363,406-412,411-418
3lcb A:322-328,332-339,349-364,406-412,411-418
3gze B:41-47,50-56,105-120,199-203,206-214
3gze D:41-47,50-56,105-120,199-204,206-214
3gze C:41-47,50-56,105-120,199-203,206-214
3gze A:40-47,50-56,105-120,199-203,206-214
2cjb A:324-330,353-361,361-385,447-452,457-465
3sc0 A:20-27,47-56,77-95,147-151,157-167
2jig B:41-47,50-56,105-120,199-203,206-214
3iva A:994-1008,1056-1066,1081-1113,1169-1173,1175-1185
3khb A:12-17,18-24,93-108,163-173,172-179
3khb B:10-16,17-24,93-108,163-173,172-181
1xu8 A:212-222,225-234,238-251,344-350,353-362
1xu8 A:212-222,225-234,251-260,344-350,353-362
2jij A:40-47,50-56,105-120,199-203,206-214
2jij B:40-47,50-56,105-120,199-203,206-214
2jij C:40-47,50-56,105-120,199-203,206-214
3lc6 B:323-328,332-338,351-364,406-412,411-418
3lc6 A:322-328,332-339,351-363,406-412,411-418
2j3m B:128-140,153-165,166-189,424-429,437-444
3sby B:20-28,47-56,77-95,147-151,157-167