1. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1m11 d1m112_ 2:12-19,20-27,27-34,100-112,196-204
1d3i d1d3i2_ 2:12-19,20-27,30-34,100-112,195-203
1jew d1jew2_ 2:12-19,20-27,30-34,100-112,198-206
2. b.121.4 Positive stranded ssRNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1qju d1qju.1 2:12-19,20-27,27-34,100-112,196-204
1ncq d1ncq.1 B:12-19,20-27,27-34,100-112,195-203
1na1 d1na1.1 B:12-19,20-27,27-34,100-112,195-203
1pvc d1pvc.1 2:12-19,20-27,27-34,100-112,203-211
1piv d1piv.1 2:12-19,20-27,27-34,100-112,203-211
1vbb d1vbb.1 2:12-19,20-27,27-34,100-112,203-211
1vbc d1vbc.1 2:12-19,20-27,27-34,100-112,203-211
1vba d1vba.1 2:12-19,20-27,27-34,100-112,203-211
1vbe d1vbe.1 2:12-19,20-27,27-34,100-112,203-211
1po1 d1po1.1 2:12-19,20-27,27-34,100-112,204-212
1po2 d1po2.1 2:12-19,20-27,27-34,100-112,204-212
1k5m d1k5m.1 B:1312-1319,1320-1327,1330-1334,1400-1412,1510-1518
1rvf d1rvf.1 2:12-19,20-27,30-34,100-112,195-203
1oop d1oop.1 B:12-19,20-27,30-34,100-112,196-204
1ev1 d1ev1.1 2:12-19,20-27,30-34,100-112,196-204
1mqt d1mqt.1 B:12-19,20-27,30-34,100-112,196-204
4rhv d4rhv.1 2:12-19,20-27,30-34,100-112,195-203
1hri d1hri.1 2:12-19,20-27,30-34,100-112,195-203
1ruj d1ruj.1 2:12-19,20-27,30-34,100-112,195-203
1rug d1rug.1 2:12-19,20-27,30-34,100-112,195-203
1vrh d1vrh.1 2:12-19,20-27,30-34,100-112,195-203
1ruf d1ruf.1 2:12-19,20-27,30-34,100-112,195-203
1rue d1rue.1 2:12-19,20-27,30-34,100-112,195-203
1rui d1rui.1 2:12-19,20-27,30-34,100-112,195-203
1ruh d1ruh.1 2:12-19,20-27,30-34,100-112,195-203
1rud d1rud.1 2:12-19,20-27,30-34,100-112,195-203
1ruc d1ruc.1 2:12-19,20-27,30-34,100-112,195-203
1r09 d1r09.1 2:12-19,20-27,30-34,100-112,195-203
2rs3 d2rs3.1 2:12-19,20-27,30-34,100-112,195-203
2rr1 d2rr1.1 2:12-19,20-27,30-34,100-112,195-203
2r04 d2r04.1 2:12-19,20-27,30-34,100-112,195-203
2r07 d2r07.1 2:12-19,20-27,30-34,100-112,195-203
2rm2 d2rm2.1 2:12-19,20-27,30-34,100-112,195-203
1rmu d1rmu.1 2:12-19,20-27,30-34,100-112,195-203
2r06 d2r06.1 2:12-19,20-27,30-34,100-112,195-203
1r08 d1r08.1 2:12-19,20-27,30-34,100-112,195-203
2rmu d2rmu.1 2:12-19,20-27,30-34,100-112,195-203
2rs5 d2rs5.1 2:12-19,20-27,30-34,100-112,195-203
2rs1 d2rs1.1 2:12-19,20-27,30-34,100-112,195-203
2hwc d2hwc.1 2:12-19,20-27,30-34,100-112,195-203
1hrv d1hrv.1 2:12-19,20-27,30-34,100-112,195-203
2hwb d2hwb.1 2:12-19,20-27,30-34,100-112,195-203
1cov d1cov.1 2:12-19,20-27,30-34,100-112,198-206
1rhi d1rhi.1 2:12-19,20-27,30-34,100-112,195-203
3. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1u0l d1u0la2 A:69-73,74-78,163-170,208-214,216-222
1u0l d1u0lc2 C:669-673,674-678,763-770,808-814,816-822
1u0l d1u0lb2 B:369-373,374-378,463-470,508-514,516-522
4. b.77.2 delta-Endotoxin (insectocide), middle domain
beta-Prism I consists of 3 4-stranded sheets; strands are parallel to the 3-fold axis ! duplication: has internal pseudo threefold symmetry
1ciy d1ciya2 A:312-326,329-339,379-389,428-439,445-457
5. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
2c9a d2c9aa2 A:111-121,128-134,136-148,255-265,266-279
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 220 (enumeration index: query1787) of S5
3iyp C:11-18,19-26,29-33,99-111,195-203
2wkr A:414-420,425-431,546-553,579-590,591-602
3epd 2:12-19,20-27,27-34,100-112,203-211
3aup D:233-240,241-245,261-265,270-274,358-362
3aup A:233-240,241-245,261-265,270-274,358-362
3aup C:233-240,241-245,261-265,270-274,358-362
2rcn A:113-118,124-130,214-222,261-266,269-275
2wkp A:414-420,425-431,546-553,579-590,591-602
2x5i B:11-18,19-26,29-33,99-111,195-203
2v5y A:91-101,108-113,120-129,235-245,246-260
4a2i V:113-118,124-130,214-222,261-266,269-275
1z7s 2:12-19,20-27,27-34,100-112,204-212
2wkq A:414-420,425-431,546-553,579-590,591-602
1z7z 2:12-19,20-27,27-34,100-112,204-212