1. a.211.1 HD-domain/PDEase-like
HD-domain/PDEase-like multihelical; consists of two different alpha-helical bundles
2hek d2heka1 A:2-7,11-16,16-25,50-70,73-88
2hek d2hekb1 B:2-7,11-16,16-25,50-70,73-88
2o6i d2o6ib1 B:13-18,22-27,28-37,62-86,96-110
2o6i d2o6ia1 A:13-18,22-27,28-37,62-86,96-112
2. d.336.1 YbiA-like
YbiA-like consists of six alpha-helices and two two-stranded beta-sheets
2b3w d2b3wa1 A:35-40,41-46,46-57,58-69,70-81
3. a.60.2 RuvA domain 2-like duplication: contains two helix-hairpin-helix (HhH) motifs !
SAM domain-like 4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
1ixr d1ixrb2 B:42-54,55-63,64-78,81-93,93-104
1bvs d1bvsf2 F:42-54,55-63,64-78,81-93,93-104
1bvs d1bvsh2 H:42-54,55-63,64-78,81-93,93-104
1bvs d1bvsb2 B:42-54,55-63,64-78,81-93,93-104
1bvs d1bvsd2 D:42-54,55-63,64-78,81-93,93-104
1ixr d1ixra1 A:42-54,55-63,64-78,81-93,93-104
1cuk d1cuka2 A:43-55,56-64,65-79,82-94,94-105
1bdx d1bdxb2 B:43-55,56-64,65-79,82-94,94-105
1bdx d1bdxd2 D:43-55,56-64,65-79,82-94,94-105
1bdx d1bdxc2 C:43-55,56-64,65-79,82-94,94-105
1bdx d1bdxa2 A:43-55,56-64,65-79,82-94,94-105
1hjp d1hjpa2 A:43-55,56-64,65-79,82-94,94-105
1bvs d1bvsa2 A:44-54,55-62,64-78,81-93,93-104
1bvs d1bvsg2 G:44-54,55-62,64-78,81-93,93-104
1bvs d1bvse2 E:44-54,55-62,64-78,81-93,93-104
1bvs d1bvsc2 C:44-54,55-62,64-78,81-93,93-104
1d8l d1d8lb1 B:43-55,56-64,65-79,82-94,94-105
1c7y d1c7ya2 A:43-55,56-64,65-79,82-94,94-105
1d8l d1d8la1 A:43-55,56-64,65-79,82-94,94-105
4. d.260.1 Suppressor of Fused, N-terminal domain
Suppressor of Fused, N-terminal domain unusual fold; bifurcated beta-sheet; left-handed beta-alpha-beta unit
1m1l d1m1la_ A:175-182,192-204,204-215,215-227,248-262
1m1l d1m1ld_ D:175-182,192-204,204-215,215-227,248-262
1m1l d1m1lb_ B:175-182,192-204,204-215,215-227,248-262
1m1l d1m1lc_ C:175-182,192-204,204-215,215-227,248-262
5. b.82.4 Regulatory protein AraC
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1xja d1xjab_ B:40-51,89-99,101-110,123-143,145-168
1xja d1xjae_ E:40-51,89-99,101-110,123-143,145-169
2aac d2aacb_ B:40-52,89-99,101-110,123-144,145-168
2arc d2arcb_ B:40-52,89-99,101-110,123-143,145-170
2arc d2arca_ A:40-52,89-99,101-110,123-143,145-167
1xja d1xjac_ C:40-52,89-99,101-110,123-144,145-168
2aac d2aaca_ A:40-52,89-99,101-110,123-143,145-168
2ara d2araa_ A:40-52,89-99,101-110,123-143,145-167
1xja d1xjaa_ A:40-52,89-99,101-110,123-143,145-170
1xja d1xjad_ D:39-52,89-99,101-110,123-143,145-171
6. i.23.1 clathrin assemblies
clathrin assemblies
1w63 d1w63r_ R:4-11,13-21,76-96,106-119,127-136
1w63 d1w63n_ N:4-11,13-21,76-96,106-119,127-136
1w63 d1w63o_ O:4-11,13-21,76-96,106-119,127-136
1w63 d1w63p_ P:4-11,13-21,76-96,106-119,127-136
1w63 d1w63m_ M:4-11,13-21,76-96,106-119,127-136
1w63 d1w63v_ V:4-11,13-21,76-96,106-119,127-136
2vgl d2vgls1 S:1-10,12-20,76-96,106-118,127-142
1w63 d1w63x_ X:1-10,13-20,76-96,106-119,127-148
1w63 d1w63u_ U:1-10,13-20,76-96,106-119,127-148
1w63 d1w63t_ T:1-10,13-20,76-96,106-119,127-148
1w63 d1w63q_ Q:1-10,13-20,76-96,106-119,127-148
1w63 d1w63s_ S:1-10,13-20,76-96,106-119,127-148
1w63 d1w63w_ W:1-10,13-20,76-96,106-119,127-148
7. d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain both first two domains are of same beta/beta/alpha fold !
CO dehydrogenase flavoprotein C-domain-like core: beta(3,4)-alpha(3); alpha+beta sandwich
1q1w d1q1wb3 B:335-343,369-378,379-393,397-404,407-423
1q1r d1q1rb3 B:335-343,369-378,379-393,397-404,407-422
1q1r d1q1ra3 A:335-343,369-378,379-393,397-404,407-422
8. a.138.1 Multiheme cytochromes duplication: contains multiple CxxCH motifs !
Multiheme cytochromes variable number of helices and little beta structure; not a true fold
1oah d1oaha_ A:284-289,290-295,357-396,403-429,435-462
1oah d1oahb_ B:284-289,290-295,357-396,403-429,435-462
1gu6 d1gu6c_ C:249-254,255-260,321-361,363-388,394-424
1gu6 d1gu6g_ G:249-254,255-260,321-361,363-388,394-424
1gu6 d1gu6a_ A:249-254,255-260,321-361,363-388,394-424
1gu6 d1gu6e_ E:249-254,255-260,321-361,363-388,394-424
2rdz d2rdzd1 D:249-254,255-260,321-361,363-388,394-424
2rdz d2rdzb1 B:249-254,255-260,321-361,363-388,394-424
2rdz d2rdzc1 C:249-254,255-260,321-361,363-388,394-424
2rdz d2rdza1 A:249-254,255-260,321-361,363-388,394-424
2e81 d2e81a1 A:262-267,268-273,333-373,375-400,406-436
3bnf d3bnfa1 A:262-267,268-273,333-373,375-400,406-436
1qdb d1qdba_ A:267-272,273-278,339-379,381-406,412-442
1fs9 d1fs9a_ A:262-267,268-273,333-373,375-400,406-436
1fs8 d1fs8a_ A:262-267,268-273,333-373,375-400,406-436
2e80 d2e80a1 A:262-267,268-273,333-373,375-400,406-436
1qdb d1qdbc_ C:267-272,273-278,339-379,381-406,412-442
1qdb d1qdbb_ B:267-272,273-278,339-379,381-406,412-442
1fs7 d1fs7a_ A:262-267,268-273,333-373,375-400,406-436
9. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
2jqg d2jqgr1 R:29-34,36-41,47-64,66-75,78-91
10. d.51.1 Eukaryotic type KH-domain (KH-domain type I) Prokaryotic and eukaryotic domains share a KH-motif but have different topologies !
Eukaryotic type KH-domain (KH-domain type I) beta-alpha(2)-beta(2)-alpha; 2 layers: alpha/beta
2nn6 d2nn6h3 H:170-176,200-207,227-248,252-267,272-293
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 674 (enumeration index: query1791) of S5
2hf6 A:12-21,23-31,86-106,117-130,138-149
2ztc A:42-54,55-63,64-78,81-93,93-104
2ztc D:42-54,55-63,64-78,81-93,93-104
2ztc C:42-54,55-63,64-78,81-93,93-104
2ztc B:42-54,55-63,64-78,81-93,93-104
3taz A:61-74,77-88,89-116,190-204,262-290
3taz B:61-74,77-88,89-117,190-205,262-290
2xa7 M:3-10,12-20,74-94,104-117,125-133
2xa7 S:1-10,12-20,76-96,106-118,127-142
3s7w A:346-351,352-357,419-459,461-486,492-523
3s7w B:346-351,352-357,419-459,461-486,492-523
2j7a J:283-288,289-294,357-396,403-429,435-462
2j7a G:283-288,289-294,357-396,403-429,435-462
2j7a Q:283-288,289-294,357-396,403-429,435-462
2j7a D:283-288,289-294,357-396,403-429,435-462
2j7a K:283-288,289-294,357-396,403-429,435-462
2j7a A:283-288,289-294,357-396,403-429,435-462
2j7a N:283-288,289-294,357-396,403-429,435-462
2j7a E:283-288,289-294,357-396,403-429,435-462
2j7a P:283-288,289-294,357-396,403-429,435-462
2j7a H:283-288,289-294,357-396,403-429,435-462
2j7a B:283-288,289-294,357-396,403-429,435-462
2j7a M:283-288,289-294,357-396,403-429,435-462
3gyk B:11-16,50-59,61-79,80-91,96-108
3gyk A:11-16,50-59,61-79,80-91,96-108
3gyk D:11-16,50-59,62-79,80-91,96-108
3gyk C:11-16,50-59,62-79,80-91,96-108
3tai A:61-74,77-88,89-116,190-204,262-290
3tai B:61-74,77-88,89-117,190-205,262-290
3f29 B:346-351,352-357,419-459,461-486,492-524
3f29 A:346-351,352-357,419-459,461-486,492-523
3owm B:346-351,352-357,419-459,461-486,492-522
3owm A:346-351,352-357,419-459,461-486,492-523
2rf7 C:249-254,255-260,321-361,363-388,394-424
2rf7 A:249-254,255-260,321-361,363-388,394-424
2rf7 B:249-254,255-260,321-361,363-388,394-424
2rf7 D:249-254,255-260,321-361,363-388,394-424
2ztd B:42-54,55-63,64-78,81-93,93-104
2ztd A:42-54,55-63,64-78,81-93,93-104
3rkh B:346-351,352-357,419-459,461-486,492-524
3rkh A:346-351,352-357,419-459,461-486,492-524
3gmf A:47-52,92-99,102-116,116-131,166-175
2zte A:42-54,55-63,64-78,81-93,93-104
3sce B:346-351,352-357,419-459,461-486,492-523
3sce A:346-351,352-357,419-459,461-486,492-523
2zo5 B:346-351,352-357,419-459,461-486,492-523
2zo5 A:346-351,352-357,419-459,461-486,492-523
2vr0 B:283-288,289-294,357-396,403-429,435-462
2vr0 D:283-288,289-294,357-396,403-429,435-462
2vr0 E:283-288,289-294,357-396,403-429,435-462
2vr0 A:283-288,289-294,357-396,403-429,435-462
2h5x B:42-54,55-63,64-78,81-93,93-104
2h5x D:42-54,55-63,64-78,81-93,93-104
2h5x C:42-54,55-63,64-78,81-93,93-104
2h5x A:41-54,55-63,64-78,81-93,93-104
3bnj A:262-267,268-273,333-373,375-400,406-436
2jkr S:1-10,12-20,76-96,106-118,127-142
2jkr I:1-10,12-20,76-96,106-118,127-142
3ttb A:346-351,352-357,419-459,461-486,492-523
3ttb B:346-351,352-357,419-459,461-486,492-523
3bnh A:262-267,268-273,333-373,375-400,406-436
3bng A:262-267,268-273,333-373,375-400,406-436
3irh A:13-18,22-27,28-37,62-86,96-114
3irh C:13-18,22-27,28-37,62-86,96-114
3irh B:13-18,22-27,28-37,62-86,96-114
3irh D:13-18,22-27,28-37,62-86,96-114
2q14 A:4-10,14-20,19-29,54-77,81-99
2q14 F:5-10,14-19,19-29,54-77,81-99
2q14 D:4-10,14-20,19-29,54-77,81-99
2q14 C:4-10,14-20,19-29,54-77,81-99
2q14 G:5-10,14-19,19-29,54-77,81-99
2q14 B:5-10,14-19,19-29,54-77,81-99
2q14 E:4-10,14-20,19-29,54-77,81-99
2q14 H:5-10,14-19,19-29,54-77,81-99
2ot4 B:346-351,352-357,419-459,461-486,492-524
2ot4 A:346-351,352-357,419-459,461-486,492-524
3lgq A:346-351,352-357,419-459,461-486,492-523
3lgq B:346-351,352-357,419-459,461-486,492-523
3fo3 B:346-351,352-357,419-459,461-486,492-523
3fo3 A:346-351,352-357,419-459,461-486,492-523
3gm6 B:346-351,352-357,419-459,461-486,492-524
3gm6 A:346-350,353-357,419-459,461-486,492-524
3tal A:61-74,77-88,89-116,190-205,262-290
3tal B:61-74,77-88,89-116,190-204,262-290
3d1i A:346-351,352-357,419-459,461-486,492-523
3d1i B:346-351,352-357,419-459,461-486,492-523
3lg1 B:346-351,352-357,419-459,461-486,492-523
3lg1 A:346-351,352-357,419-459,461-486,492-523
3lb8 A:335-343,369-378,379-393,397-404,407-419
3lb8 B:335-343,369-378,379-393,397-404,407-418
3l1t C:249-254,255-260,321-361,363-388,394-424
3l1t A:249-254,255-260,321-361,363-388,394-424
3l1t B:249-254,255-260,321-361,363-388,394-424
3l1t D:249-254,255-260,321-361,363-388,394-424
3mmo B:346-351,352-357,419-459,461-486,492-522
3mmo A:346-351,352-357,419-459,461-486,492-522
2jkt S:1-10,12-20,76-96,106-119,127-142
2jkt I:1-10,12-20,76-96,106-119,127-142