1. f.4.3 Porins
Transmembrane beta-barrels not a true fold, gathers together transmembrane barrels of different (n,S)
1nqf d1nqfa_ A:25-30,41-50,76-81,105-114,123-131
1kmo d1kmoa_ A:102-109,119-128,159-165,188-197,209-217
1pnz d1pnza_ A:102-109,119-128,159-165,188-197,209-217
1kmp d1kmpa_ A:101-109,119-128,159-165,188-197,209-217
1fep d1fepa_ A:27-32,44-53,81-87,118-127,139-147
1po0 d1po0a_ A:102-109,119-128,160-165,188-197,210-217
1po3 d1po3a_ A:101-109,119-128,159-165,188-197,209-217
2gsk d2gska1 A:25-30,41-49,75-81,105-112,123-131
1po3 d1po3b_ B:101-109,119-128,159-165,188-197,209-217
2grx d2grxa1 A:49-54,65-73,103-107,125-135,146-154
2grx d2grxb1 B:49-54,65-73,103-107,125-135,146-154
1by3 d1by3a_ A:49-54,65-73,103-107,125-135,145-154
2guf d2gufa1 A:25-30,41-49,75-81,105-114,122-131
2ysu d2ysua1 A:25-30,41-49,75-81,105-114,122-131
1fcp d1fcpa_ A:49-54,65-73,103-107,125-135,146-154
1ujw d1ujwa_ A:25-30,41-49,75-81,105-114,122-131
1qjq d1qjqa_ A:49-54,65-73,103-107,125-135,146-154
1qff d1qffa_ A:49-54,65-73,103-107,125-135,146-154
1by5 d1by5a_ A:49-54,65-73,103-107,125-135,145-154
1nqg d1nqga_ A:25-30,41-49,75-81,105-114,122-131
1nqe d1nqea_ A:25-30,41-49,75-81,105-114,122-131
1nqh d1nqha_ A:25-30,41-49,75-81,105-114,122-131
2. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1fpm d1fpmb_ B:40-44,73-89,91-98,256-263,265-273
1dg3 d1dg3a2 A:10-18,24-35,37-45,76-85,91-100
2eyq d2eyqb2 B:350-357,369-382,384-390,433-438,439-445
1f5n d1f5na2 A:10-18,24-35,37-45,77-85,91-99
3. d.29.1 Ribosomal protein L31e
Ribosomal protein L31e beta-alpha-beta-(alpha)-beta(2); 2 layers: alpha/beta; mixed beta-sheet, order: 1342
1ffk d1ffku_ U:4-12,24-42,47-51,68-79,80-88
1yjw d1yjwx1 X:7-14,24-42,47-51,68-79,80-88
1yjn d1yjnx1 X:7-14,24-42,47-51,68-79,80-88
1qvg d1qvgw_ W:7-14,24-42,47-51,68-79,80-88
1vq8 d1vq8x1 X:7-14,24-42,47-51,68-79,80-88
1yit d1yitx1 X:7-14,24-42,47-51,68-79,80-88
1q82 d1q82y_ Y:7-14,24-42,47-51,68-79,80-88
1vq9 d1vq9x1 X:7-14,24-42,47-51,68-79,80-88
1q81 d1q81y_ Y:7-14,24-42,47-51,68-79,80-88
1yj9 d1yj9x1 X:7-14,24-42,47-51,68-79,80-87
1vq4 d1vq4x1 X:7-14,24-42,47-51,68-79,80-88
1vqo d1vqox1 X:7-14,24-42,47-51,68-79,80-88
1vqn d1vqnx1 X:7-14,24-42,47-51,68-79,80-88
1vql d1vqlx1 X:7-14,24-42,47-51,68-79,80-88
1vqm d1vqmx1 X:7-14,24-42,47-51,68-79,80-88
1yij d1yijx1 X:7-14,24-42,47-51,68-79,80-88
1n8r d1n8ry_ Y:7-14,24-42,47-51,68-79,80-88
1vqp d1vqpx1 X:7-14,24-42,47-51,68-79,80-88
1m1k d1m1ky_ Y:7-14,24-42,47-51,68-79,80-88
2otl d2otlx1 X:7-14,24-42,47-51,68-79,80-88
1kd1 d1kd1y_ Y:7-14,24-42,47-51,68-79,80-88
1vq7 d1vq7x1 X:7-14,24-42,47-51,68-79,80-88
1q86 d1q86y_ Y:7-14,24-42,47-51,68-79,80-88
1kqs d1kqsw_ W:7-14,24-42,47-51,68-79,80-88
1nji d1njiy_ Y:7-14,24-42,47-51,68-79,80-88
1k9m d1k9my_ Y:7-14,24-42,47-51,68-79,80-88
1qvf d1qvfw_ W:7-14,24-42,47-51,68-79,80-88
1kc8 d1kc8y_ Y:7-14,24-42,47-51,68-79,80-88
1k73 d1k73y_ Y:7-14,24-42,47-51,68-79,80-88
1q7y d1q7yy_ Y:7-14,24-42,47-51,68-79,80-88
1vqk d1vqkx1 X:7-14,24-42,47-51,68-79,80-88
1vq6 d1vq6x1 X:7-14,24-42,47-51,68-79,80-88
1m90 d1m90y_ Y:7-14,24-42,47-51,68-79,80-88
1k8a d1k8ay_ Y:7-14,24-42,47-51,68-79,80-88
2otj d2otjx1 X:7-14,24-42,47-51,68-79,80-88
1vq5 d1vq5x1 X:7-14,24-42,47-51,68-79,80-88
1jj2 d1jj2w_ W:7-14,24-42,47-51,68-79,80-88
1yi2 d1yi2x1 X:7-14,24-42,47-51,68-79,80-88
1yhq d1yhqx1 X:7-14,24-42,47-51,68-79,80-88
1s72 d1s72x_ X:7-14,24-42,47-51,68-79,80-88
4. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
3cce d3ccex1 X:7-14,24-42,47-51,68-79,80-87
3ccj d3ccjx1 X:7-14,24-42,47-51,68-79,80-88
1w2b d1w2bw_ W:7-14,24-42,47-51,68-79,80-88
3ccm d3ccmx1 X:7-14,24-42,47-51,68-79,80-87
3cc7 d3cc7x1 X:7-14,24-42,47-51,68-79,80-88
3cme d3cmex1 X:7-14,24-42,47-51,68-79,80-88
3ccq d3ccqx1 X:7-14,24-42,47-51,68-79,80-88
3cpw d3cpww1 W:7-14,24-42,47-51,68-79,80-88
3ccl d3cclx1 X:7-14,24-42,47-51,68-79,80-88
3ccr d3ccrx1 X:7-14,24-42,47-51,68-79,80-88
3ccs d3ccsx1 X:7-14,24-42,47-51,68-79,80-88
3ccv d3ccvx1 X:7-14,24-42,47-51,68-79,80-88
2qa4 d2qa4x1 X:7-14,24-42,47-51,68-79,80-88
3cc2 d3cc2x1 X:7-14,24-42,47-51,68-79,80-88
3cma d3cmax1 X:7-14,24-42,47-51,68-79,80-88
2qex d2qexx1 X:7-14,24-42,47-51,68-79,80-88
3ccu d3ccux1 X:7-14,24-42,47-51,68-79,80-88
3cd6 d3cd6x1 X:7-14,24-42,47-51,68-79,80-88
3cc4 d3cc4x1 X:7-14,24-42,47-51,68-79,80-88
5. c.56.1 HybD-like the HybD fold coincides with the consensus core structure !
Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
1c8b d1c8bb_ B:473-483,525-538,588-599,605-612,645-657
1c8b d1c8ba_ A:473-483,525-538,588-599,605-612,645-657
1c8b d1c8bb_ B:473-483,485-508,588-599,605-612,645-657
1c8b d1c8ba_ A:473-483,485-508,588-599,605-612,645-657
6. b.142.1 DNA-binding pseudobarrel domain
DNA-binding pseudobarrel domain core: barrel, open; n=7, S*=10; capped with helices at both ends; partial similarity to the AbrB/MazE/MraZ-like fold (scop_cf 89446)
1na6 d1na6a1 A:17-25,43-52,60-72,116-124,132-139
1yel d1yela1 A:5-13,25-33,38-45,80-88,90-98
1na6 d1na6b1 B:18-26,43-52,60-71,114-123,132-139
1wid d1wida_ A:184-192,206-215,225-233,270-277,283-290
7. d.172.1 gp120 core
gp120 core unusual fold
1g9n d1g9ng_ G:283-289,334-354,357-364,443-457,464-470
1rzk d1rzkg_ G:283-289,334-354,357-362,443-457,464-470
1yym d1yymg1 G:283-289,334-354,357-364,443-457,464-470
2ny6 d2ny6a1 A:283-289,334-354,357-362,443-457,464-470
2i60 d2i60p1 P:283-289,334-354,357-364,443-457,464-470
1yyl d1yylp1 P:1283-1289,1334-1354,1357-1364,1443-1457,1464-1470
1yyl d1yylg1 G:283-289,334-354,357-362,443-457,464-470
2i5y d2i5yp1 P:283-289,334-354,357-364,443-457,464-470
2ny1 d2ny1a1 A:283-289,334-354,357-362,443-457,464-470
1yym d1yymp1 P:1283-1289,1334-1354,1357-1362,1443-1457,1464-1470
1gc1 d1gc1g_ G:283-289,334-349,357-362,443-457,464-470
1rzj d1rzjg_ G:283-289,334-354,357-362,443-457,464-470
2i60 d2i60g1 G:283-289,334-354,357-364,443-457,464-470
2i5y d2i5yg1 G:283-289,334-354,357-362,443-457,464-470
1g9m d1g9mg_ G:283-289,334-354,357-362,443-457,464-470
2ny7 d2ny7g1 G:283-289,334-354,357-362,443-457,464-470
2ny0 d2ny0a1 A:283-289,334-354,357-362,443-457,464-470
2ny5 d2ny5g1 G:283-289,334-354,357-362,443-457,464-470
2ny4 d2ny4a1 A:283-289,334-354,357-362,443-457,464-470
2ny2 d2ny2a1 A:283-289,334-354,357-362,443-457,464-470
2nxz d2nxza1 A:283-289,334-354,357-362,443-457,464-470
2ny3 d2ny3a1 A:283-289,334-354,357-362,443-457,464-470
2nxy d2nxya1 A:283-289,334-354,357-362,443-457,464-470
2b4c d2b4cg1 G:283-289,334-354,357-362,441-457,464-470
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 753 (enumeration index: query1806.1807) of S5
3t4t B:197-209,208-220,223-227,236-245,253-257
3t4t A:198-209,208-220,223-227,236-245,253-257
3hqf A:17-26,43-52,60-71,114-124,132-139
3t4q A:197-209,208-220,223-227,236-245,253-257
3i56 X:7-14,24-42,47-51,68-79,80-88
3izr G:16-24,35-53,56-60,77-88,89-97
3e9d A:1-11,183-197,197-205,217-231,232-247
3e9d B:1-11,183-197,197-205,217-231,232-247
3e9d A:1-11,124-148,197-205,217-231,232-247
3e9d B:1-11,124-148,197-205,217-231,232-247
3t4k A:198-209,208-220,223-227,236-245,253-257
3t4k B:197-209,208-220,223-227,236-245,253-257
3rgn A:25-30,41-49,75-81,105-114,122-131
3izs G:7-16,27-45,48-52,69-80,81-89
3e9c B:2-11,183-197,197-205,217-231,232-247
3e9c A:1-11,183-197,197-205,217-231,232-247
3e9c A:1-11,124-148,197-205,217-231,232-247
3e9c B:2-11,124-148,197-205,217-231,232-247
2w16 B:168-173,184-192,216-220,242-252,262-271
2w16 A:168-173,184-192,216-220,242-252,262-271
3g6e X:7-14,24-42,47-51,68-79,80-88
3i55 X:7-14,24-42,47-51,68-79,80-88
3hi1 G:283-289,334-354,357-362,442-457,464-470
3hi1 J:283-289,334-354,357-362,444-457,464-470
3se8 G:283-289,334-354,357-362,441-457,464-470
3fqj A:42-56,103-114,127-131,213-225,226-235
2w76 B:168-173,184-192,216-220,242-252,262-271
2w76 A:168-173,184-192,216-220,242-252,262-271
3u7y G:283-289,334-354,357-362,440-457,464-470
3fqi A:42-56,103-114,127-131,213-225,226-235
3t4o A:198-209,208-220,223-227,236-245,253-257
3t4o B:197-209,208-220,223-227,236-245,253-257
2w6u B:168-173,184-192,216-220,242-252,262-271
2w6u A:168-173,184-192,216-220,242-252,262-271
3csn A:122-127,138-147,172-178,202-212,222-231
3csn B:122-127,138-147,172-178,202-212,222-231
4a1e W:6-15,23-44,47-51,68-79,87-95
3g4s X:7-14,24-42,47-51,68-79,80-88
3qof B:32-42,49-59,66-74,121-128,137-149
3qof D:33-42,49-59,66-74,121-127,137-149
3qof A:32-42,49-59,66-74,121-128,137-149
3qof C:33-42,49-59,66-74,121-127,137-149
2b8w B:10-18,24-35,37-45,77-85,91-99
2b8w A:10-18,24-35,37-45,77-85,91-99
3hjh A:349-357,371-382,383-390,432-438,439-445
3g71 X:7-14,24-42,47-51,68-79,80-88
3kdp C:495-503,503-512,512-517,543-553,576-586
3kdp A:495-503,503-512,512-517,543-553,576-586
3csl A:122-127,138-147,172-178,202-212,222-231
3csl B:122-127,138-147,173-178,202-212,222-231
3qnu A:32-42,49-59,66-75,121-128,137-149
3do6 B:24-29,58-74,76-83,241-248,250-257
3do6 A:24-29,58-74,76-83,241-248,250-257
3jwd B:283-289,334-354,357-362,443-458,464-470
3jwd A:283-289,334-354,357-362,443-458,464-470
2oa0 A:510-517,517-526,526-531,559-568,591-601
2bc9 A:10-18,24-35,36-45,77-85,90-99
3e57 A:22-26,28-40,54-66,122-134,143-153
3e57 B:22-26,28-40,54-66,124-134,143-153
1xkw A:82-87,98-106,130-134,152-162,172-181
2o5p A:168-173,184-193,216-220,242-252,262-271
2o5p B:168-173,184-193,216-220,242-252,262-271
2hdi A:50-55,66-75,98-104,129-138,149-158
3ddr A:122-127,138-146,172-178,202-212,222-231
3ddr B:122-127,138-146,172-178,202-212,222-231
4a17 W:6-15,23-44,47-51,68-79,87-95
3t4s A:198-209,208-220,223-227,236-245,253-257
3t4s B:198-209,208-220,223-227,236-245,253-257
2d4h A:10-18,24-35,37-45,77-85,91-99
2d4h B:10-18,24-35,36-45,77-85,90-99
4a1c W:6-15,23-44,47-51,68-79,87-95
2b92 B:10-18,24-35,37-45,77-85,91-99
2b92 A:10-18,24-35,37-45,76-85,91-99
3cxc W:7-14,24-42,47-51,68-79,80-88
3q5d A:32-42,49-59,66-75,121-128,137-149
2w78 A:168-173,184-193,216-220,242-252,262-271
2w78 B:168-173,184-192,216-220,242-252,262-271
3se9 G:283-289,334-354,358-362,441-457,465-470
3fhh A:21-26,37-45,70-76,96-107,115-125
3efm A:53-58,69-77,100-105,126-136,146-155
3ngb I:283-289,334-354,357-362,441-457,464-470
3ngb A:283-289,334-354,357-362,441-457,464-470
3ngb G:283-289,334-354,357-362,441-457,464-470
3ngb D:283-289,334-354,357-362,441-457,464-470
3idx G:283-289,334-354,357-362,445-457,464-470
2w75 A:168-173,184-192,216-220,242-252,262-271
2w75 B:168-173,184-192,216-220,242-252,262-271
1xkh B:168-173,184-193,216-220,242-251,262-271
1xkh A:168-173,184-193,216-220,242-251,262-271
1xkh C:168-173,184-193,216-220,242-251,262-271
3fbt A:153-158,161-169,169-173,183-189,190-196
2iah A:168-173,184-192,216-220,242-252,262-271
3cou A:3-7,8-15,19-36,94-102,105-115
2kuf A:500-504,504-517,519-527,531-538,550-558
2juo A:35-44,47-60,66-71,90-101,104-116
3jwo A:283-289,334-354,357-362,443-458,464-470
3lqa G:279-285,329-349,351-356,443-456,466-472
3m8d A:25-30,41-49,75-81,105-114,122-131
3t4j B:197-209,208-220,223-227,236-245,253-257
3t4j A:198-209,208-220,223-227,236-245,253-257
3rgm A:25-30,41-49,75-81,105-114,122-131
4a1a W:6-15,23-44,47-51,68-79,87-95
2hdf A:50-55,66-75,98-104,129-138,149-158
3idy G:283-289,334-354,357-362,445-457,464-470
3idy A:283-289,334-354,358-362,445-457,465-470
2w77 B:168-173,184-192,216-220,242-252,262-271
2w77 A:168-173,184-192,216-220,242-252,262-271
3q5e E:33-42,49-59,66-74,121-127,137-149
3q5e C:32-42,49-59,66-74,121-128,137-149
3q5e G:33-42,49-59,66-74,122-127,137-148
3q5e A:32-42,49-59,66-74,121-128,137-149
2w6t B:168-173,184-193,216-220,242-252,262-271
2w6t A:168-173,184-192,216-220,242-252,262-271
3m8b A:25-30,41-49,75-81,105-114,122-131
2bf1 A:294-303,348-365,373-377,456-471,477-481
3t4l B:197-209,208-220,223-227,236-245,253-257
3t4l A:198-209,208-220,223-227,236-245,253-257
2j37 6:17-23,35-53,56-60,78-88,89-97
2qad E:283-289,334-354,357-364,442-457,464-470
2qad A:283-289,334-354,357-364,442-457,464-470
2go5 6:17-23,35-53,56-60,78-88,89-97