1. b.64.1 Mannose 6-phosphate receptor domain
Mannose 6-phosphate receptor domain barrel, partly open; n*=8, S*=10; one psi loop
2rl7 d2rl7a1 A:43-50,90-97,112-120,125-132,143-150
2rl7 d2rl7b1 B:43-50,90-97,112-121,125-132,143-150
1keo d1keoa_ A:43-50,90-97,112-120,125-132,143-150
2rl7 d2rl7c1 C:43-50,90-97,112-121,125-132,143-150
2rl7 d2rl7d1 D:43-50,90-97,112-121,125-132,143-150
2rl8 d2rl8a1 A:44-50,90-97,112-119,124-134,142-150
1keo d1keob_ B:43-50,90-97,112-121,125-132,143-150
2rlb d2rlbb1 B:43-50,90-97,112-119,124-135,141-150
3cy4 d3cy4a1 A:43-50,90-97,112-119,124-135,141-150
2rl8 d2rl8b1 B:43-50,90-97,112-119,124-135,141-150
3cy4 d3cy4b1 B:43-50,90-97,112-119,124-135,141-150
2rlb d2rlba1 A:44-50,90-97,112-119,124-135,141-150
1c39 d1c39a_ A:43-50,90-97,112-119,124-135,141-150
1m6p d1m6pa_ A:44-50,90-97,112-119,124-135,141-150
1c39 d1c39b_ B:43-50,90-97,112-119,124-135,141-150
1m6p d1m6pb_ B:44-50,90-97,112-119,124-135,141-150
2rl9 d2rl9a1 A:44-50,90-97,112-119,124-135,141-150
2rl9 d2rl9b1 B:42-50,90-97,112-119,124-135,141-150
1sz0 d1sz0b2 B:1167-1172,1220-1228,1242-1250,1260-1267,1268-1276
1syo d1syob1 B:1024-1031,1071-1077,1088-1097,1103-1110,1111-1120
1sz0 d1sz0a1 A:24-31,71-77,88-97,99-110,111-120
1syo d1syob3 B:1323-1329,1373-1380,1391-1399,1407-1418,1419-1428
1syo d1syob1 B:1054-1061,1071-1077,1088-1097,1103-1110,1111-1120
1sz0 d1sz0a2 A:202-209,220-229,241-250,260-267,268-276
1syo d1syoa1 A:24-31,71-78,87-97,102-110,111-120
1sz0 d1sz0b3 B:1323-1329,1373-1380,1391-1401,1410-1418,1419-1428
1syo d1syoa2 A:166-172,220-229,241-250,260-267,268-276
1syo d1syoa1 A:54-61,71-78,87-97,102-110,111-120
1e6f d1e6fa_ A:1545-1551,1586-1593,1606-1615,1624-1632,1633-1643
1e6f d1e6fb_ B:1545-1551,1586-1593,1606-1615,1624-1632,1633-1643
1gp3 d1gp3a_ A:1545-1551,1586-1593,1606-1615,1624-1632,1633-1643
1sz0 d1sz0a2 A:167-172,220-229,241-250,260-267,268-276
1gqb d1gqbb_ B:38-44,79-86,99-108,117-125,126-136
1gp0 d1gp0a_ A:1545-1551,1586-1593,1606-1615,1624-1632,1633-1643
1gqb d1gqba_ A:38-44,79-86,99-108,117-125,126-136
1syo d1syoa3 A:323-329,373-380,391-399,407-418,419-428
1q25 d1q25a3 A:323-329,373-380,391-401,411-418,419-428
1sz0 d1sz0a3 A:323-329,373-380,391-401,411-418,419-428
2cnj d2cnjd1 D:1546-1551,1586-1593,1606-1616,1624-1632,1633-1643
1sz0 d1sz0b1 B:1024-1031,1071-1078,1087-1097,1099-1110,1111-1120
1q25 d1q25a1 A:24-31,71-78,87-96,99-110,111-120
2cnj d2cnjd1 D:1571-1575,1586-1593,1606-1616,1624-1632,1633-1643
2. d.166.1 ADP-ribosylation
ADP-ribosylation unusual fold
1gxz d1gxza_ A:4-8,121-129,165-173,199-205,207-213
1og1 d1og1a_ A:4-8,121-129,164-173,199-205,207-213
1og3 d1og3a_ A:4-8,121-130,164-173,199-205,207-213
1gy0 d1gy0a_ A:4-8,121-129,165-173,199-205,207-213
1og4 d1og4a_ A:4-8,121-130,164-173,199-205,207-213
3. a.102.1 Six-hairpin glycosidases
alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
1v7w d1v7wa1 A:731-742,744-753,754-763,770-777,791-801
1v7v d1v7va1 A:731-742,744-753,754-763,770-777,791-801
1v7x d1v7xa1 A:731-742,744-753,754-763,770-777,791-801
4. b.40.2 Bacterial enterotoxins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1v1p d1v1pb1 B:40-46,51-60,61-68,89-94,96-102
1v1o d1v1oa1 A:40-45,51-60,61-68,89-94,96-102
1v1p d1v1pa1 A:40-45,51-59,60-67,88-92,94-100
5. b.40.7 CheW-like
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
2ch4 d2ch4w1 W:9-19,48-56,57-64,79-87,88-96
1b3q d1b3qa2 A:542-552,579-586,587-594,608-618,619-626
2ch4 d2ch4y1 Y:9-19,48-56,57-64,79-87,88-96
6. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
1w2u d1w2ua_ A:82-92,96-108,118-125,145-156,157-165
1qh7 d1qh7b_ B:65-78,78-90,92-99,119-131,137-149
1oa4 d1oa4a_ A:83-93,97-109,118-129,145-156,157-165
2bwa d2bwaa1 A:84-95,99-111,120-129,149-159,160-169
2bwc d2bwcb1 B:84-95,99-111,120-129,149-159,160-169
2dcy d2dcyd1 D:49-56,61-74,75-87,102-114,121-133
1nlr d1nlra_ A:83-94,97-109,118-129,145-156,157-165
2dcy d2dcye1 E:49-56,61-74,75-87,102-114,121-133
2bw8 d2bw8a1 A:83-95,99-111,120-129,149-159,160-169
2bw8 d2bw8b1 B:83-95,99-111,120-129,149-159,160-169
2bwc d2bwca1 A:84-96,99-111,120-129,149-159,160-169
1hix d1hixa_ A:60-64,70-82,85-92,111-123,129-141
1h0b d1h0ba_ A:83-95,99-111,120-129,149-159,160-169
1olr d1olra_ A:82-92,96-108,118-129,145-156,157-165
1h0b d1h0bb_ B:83-95,99-111,120-129,149-159,160-169
1olq d1olqa_ A:78-91,91-104,114-121,141-152,153-161
1h8v d1h8ve_ E:78-91,91-104,114-121,141-152,153-161
1oa3 d1oa3c_ C:78-91,91-104,114-121,141-152,153-161
1oa3 d1oa3d_ D:78-91,91-104,114-121,141-152,153-161
1h8v d1h8vf_ F:78-91,91-104,114-121,141-152,153-161
1h8v d1h8va_ A:78-91,91-104,114-121,141-152,153-161
1oa2 d1oa2c_ C:78-91,91-104,114-121,141-152,153-161
1olq d1olqb_ B:78-91,91-104,114-121,141-152,153-161
1oa2 d1oa2a_ A:78-91,91-104,114-121,141-152,153-162
2bwa d2bwab1 B:83-96,99-111,120-129,149-159,160-169
1oa3 d1oa3b_ B:78-91,91-104,114-125,141-152,153-162
1h8v d1h8vb_ B:78-91,91-104,114-125,141-152,153-162
1oa2 d1oa2f_ F:78-91,91-104,114-125,141-152,153-162
1oa2 d1oa2b_ B:78-91,91-104,114-125,141-152,153-162
1h8v d1h8vd_ D:78-91,91-104,114-125,141-152,153-162
1oa2 d1oa2e_ E:78-91,91-104,114-125,141-152,153-161
1oa2 d1oa2d_ D:78-91,91-104,114-125,141-152,153-161
1h8v d1h8vc_ C:78-91,91-104,114-125,141-152,153-161
1oa3 d1oa3a_ A:78-91,91-104,114-125,141-152,153-161
7. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1quq d1quqa_ A:62-67,88-96,101-108,127-136,137-149
8. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
2ohk d2ohka1 A:5-10,11-21,24-34,37-42,116-122
2ohr d2ohra1 A:5-10,11-21,24-34,37-42,116-122
2hiz d2hizc1 C:5-10,14-21,24-34,37-42,116-122
1ym4 d1ym4c1 C:5-10,14-21,24-34,37-42,116-122
3ckp d3ckpb1 B:5-9,14-21,24-34,37-42,116-122
2of0 d2of0a1 A:5-10,14-21,24-34,37-42,116-122
2fdp d2fdpb1 B:5-9,14-21,24-34,37-42,116-122
2pma d2pmaa1 A:25-29,29-37,38-47,52-56,142-146
2zht d2zhta1 A:5-10,11-21,25-32,35-42,116-122
2zhv d2zhva1 A:5-10,11-21,25-32,35-42,116-122
2qu3 d2qu3a1 A:67-72,73-83,87-94,97-104,178-184
2p83 d2p83b1 B:5-10,14-21,24-32,35-42,116-122
2hm1 d2hm1a1 A:5-10,14-21,25-32,35-43,116-122
2zhs d2zhsa1 A:5-10,14-21,24-32,35-42,116-122
2p83 d2p83c1 C:5-10,14-21,24-32,35-42,116-122
3ckp d3ckpa1 A:5-10,11-21,24-32,35-42,116-122
1w51 d1w51a_ A:5-10,14-21,24-32,35-42,116-122
3ckp d3ckpc1 C:5-9,14-21,24-32,35-42,116-122
3ckr d3ckrc1 C:5-9,14-21,24-32,35-42,116-122
1w50 d1w50a_ A:5-10,14-21,24-32,35-42,116-122
2ohl d2ohla1 A:5-10,14-21,24-32,35-42,116-122
2va5 d2va5a1 A:5-10,11-21,24-32,35-42,116-122
2ohn d2ohna1 A:5-10,14-21,24-32,35-42,116-122
2ohq d2ohqa1 A:5-10,11-21,24-32,35-42,116-122
2zhu d2zhua1 A:5-10,11-21,24-32,35-42,116-122
2fdp d2fdpa1 A:5-9,14-21,24-32,35-42,116-122
2f3e d2f3eb1 B:5-9,14-21,24-32,35-42,116-122
2hiz d2hizb1 B:5-10,11-21,24-32,35-42,116-122
2ohm d2ohma1 A:5-10,11-21,24-32,35-42,116-122
2fdp d2fdpc1 C:5-9,14-21,24-32,35-42,116-122
2oht d2ohta1 A:5-10,11-21,24-32,35-42,116-122
2ohp d2ohpa1 A:5-10,11-21,24-32,35-42,116-122
2f3e d2f3ec1 C:5-9,11-21,24-32,35-42,116-122
3ckr d3ckrb1 B:5-9,14-21,24-32,35-41,116-122
9. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1zsw d1zswa2 A:69-74,76-86,154-165,188-194,201-208
10. b.1.1 Immunoglobulin
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1xmw d1xmwa1 A:7-14,57-65,70-77,157-164,170-177
1sy6 d1sy6a1 A:49-55,58-67,71-81,178-186,195-202
1sy6 d1sy6a1 A:8-12,58-67,71-81,178-186,195-202
11. b.77.2 delta-Endotoxin (insectocide), middle domain
beta-Prism I consists of 3 4-stranded sheets; strands are parallel to the 3-fold axis ! duplication: has internal pseudo threefold symmetry
1ciy d1ciya2 A:347-352,359-368,379-389,428-439,445-457
1ciy d1ciya2 A:312-326,359-368,379-389,428-439,445-457
12. b.2.5 p53-like transcription factors
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
2euw d2euwa1 A:113-123,151-163,187-191,220-224,244-248
2evi d2evia1 A:113-123,151-163,187-191,220-224,244-248
2euv d2euva1 A:113-123,151-163,187-191,220-224,244-248
1m6u d1m6ub_ B:113-123,151-162,187-191,220-224,244-248
2etw d2etwa1 A:113-123,151-163,187-191,220-224,244-248
2eux d2euxa1 A:113-123,151-163,187-191,220-224,244-248
2evh d2evha1 A:113-123,151-163,187-191,220-224,244-248
1mnn d1mnna_ A:113-123,151-163,187-191,220-224,244-248
2evf d2evfa1 A:113-123,151-163,187-191,220-224,244-248
2evj d2evja1 A:113-123,151-163,187-191,220-224,244-248
2euz d2euza1 A:113-123,151-163,187-191,220-224,244-248
2evg d2evga1 A:113-123,151-163,187-191,220-224,244-248
1mn4 d1mn4a_ A:113-123,149-163,187-191,220-224,244-248
1m6u d1m6ua_ A:113-123,151-162,187-191,220-224,244-248
1m7u d1m7ua_ A:113-123,151-163,187-191,220-224,244-248
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 227 (enumeration index: query1839.1840) of S5
2wf1 A:66-71,75-82,85-93,96-103,177-183
3kdf B:62-67,88-96,101-108,127-136,137-149
3qbh B:5-9,14-21,25-32,35-42,116-122
3msl A:5-10,11-21,24-34,37-41,116-122
3qde B:740-751,753-762,763-772,779-786,801-811
3qde A:740-751,753-762,763-772,779-786,801-811
3rtn A:5-10,11-21,24-32,35-42,116-122
3pi5 C:5-9,14-21,24-32,35-42,116-122
2dcj B:64-77,76-89,91-98,118-130,136-148
2dcj A:64-77,76-89,91-98,118-130,136-148
3s7l A:67-72,73-83,86-94,97-104,178-184
3s2o A:5-10,14-21,24-34,37-42,116-122
3afj A:753-760,766-775,776-785,793-798,812-822
3afj B:753-760,766-774,776-785,793-798,812-822
3rvi A:5-10,14-21,24-32,35-42,116-122
2vnn A:66-71,72-82,85-95,98-103,177-183
3igb A:67-72,73-83,86-96,99-104,178-184
3bug A:5-9,14-21,24-34,37-42,116-122
3hw1 C:5-10,11-21,24-32,35-42,116-122
3hw1 B:5-9,14-21,24-32,35-42,116-122
3b7m B:77-86,90-102,112-123,139-150,151-160
3b7m D:77-86,90-102,112-123,139-150,151-160
3b7m A:77-86,90-102,112-123,139-150,151-160
3b7m C:77-86,90-102,112-123,139-150,151-160
2cqt B:753-760,766-775,776-785,793-798,813-822
2cqt A:753-760,766-775,776-785,793-798,813-822
3dv1 B:5-9,14-21,24-32,35-42,116-122
3dv1 C:5-9,11-21,25-32,35-42,116-122
2vs1 A:1-6,12-17,18-22,33-39,40-46
2ww2 C:672-676,681-688,690-697,705-713,730-739
2ww2 B:672-676,681-688,690-697,705-713,730-739
2ww2 A:672-676,681-688,690-697,705-713,730-739
3rsv A:5-10,14-21,24-34,37-42,116-122
3ivh A:66-71,72-82,86-93,96-104,177-183
3i25 A:5-9,14-21,24-32,35-43,116-122
3r2t A:58-64,69-78,79-86,108-112,114-120
3s7m A:67-72,73-83,86-94,97-104,178-184
2c1f A:74-89,92-102,111-118,136-147,156-166
3acp A:7-11,67-74,75-82,352-362,374-379
3k43 B:43-50,90-103,108-121,125-131,143-150
3k43 A:43-50,90-97,112-121,125-131,142-150
3r1g B:66-71,72-82,85-95,98-103,177-183
3in3 A:67-72,73-83,86-96,99-105,178-184
2v5o A:1831-1837,1880-1888,1949-1959,1963-1973,1975-1984
2v5o A:2021-2027,2070-2077,2088-2097,2101-2111,2112-2122
3qfy B:753-760,766-775,776-785,793-798,813-822
3qfy A:753-760,766-775,776-785,793-798,813-822
2k5h A:48-53,56-62,63-70,83-87,88-95
3k5f A:5-9,14-21,25-32,35-42,116-122
3ixk C:53-57,62-69,72-80,83-89,164-170
3ixk A:53-57,62-69,72-80,83-90,164-170
3inh A:67-72,73-83,86-94,97-104,178-184
3qfz B:753-760,766-775,776-785,793-798,813-822
3qfz A:753-760,766-775,776-785,793-798,813-822
2wf4 A:66-70,75-82,86-93,96-103,177-183
3hvg A:5-9,14-21,24-32,35-41,116-122
3k5c C:5-9,11-21,24-32,35-42,116-122
3u6a B:5-9,11-21,24-34,37-42,116-122
3u6a A:5-9,11-21,24-34,37-42,116-122
3kls X:58-64,71-78,79-86,108-112,114-120
3kls Y:58-64,71-78,79-86,108-112,114-120
2wvy C:672-676,681-688,690-697,705-713,730-739
2wvy B:672-676,681-688,690-697,705-713,730-739
2wvy A:672-676,681-688,690-697,705-713,730-739
3qg0 B:753-760,766-775,776-785,793-798,813-822
3qg0 A:753-760,766-774,776-785,793-798,812-822
3in4 A:67-72,73-83,86-94,97-105,178-184
3n4l C:11-16,20-27,30-40,43-48,122-128
3n4l A:11-15,20-27,30-38,41-48,122-128
2kva A:620-626,667-674,688-695,700-707,713-721
2jem A:117-129,129-142,153-160,179-192,194-205
2jem B:117-129,129-142,153-160,179-192,194-205
3l38 A:67-72,73-83,87-94,97-105,178-184
3acs B:753-760,766-775,776-785,793-798,813-822
3acs A:753-760,766-775,776-785,793-798,813-822
3ind A:67-72,73-83,86-94,97-104,178-184
2wjo A:5-10,11-21,24-32,35-42,116-122
3l3a A:67-72,73-83,87-94,97-104,178-184
3lew A:306-310,327-331,341-347,448-456,460-469
2f6b A:65-78,78-90,92-103,119-131,137-149
3k42 A:43-50,90-97,112-121,125-131,142-150
3k42 B:43-50,90-98,111-121,125-131,143-150
3nbh B:33-38,70-77,78-85,107-112,114-120
2dck A:64-77,76-89,91-98,118-130,136-148
3rtm A:5-10,11-21,24-32,35-42,116-122
3ixj C:53-57,62-69,72-82,85-90,164-170
3ixj A:53-57,62-69,72-80,83-91,164-170
2dcz B:50-56,61-74,75-87,102-114,121-133
2dcz A:49-56,61-74,75-87,102-114,121-133
3ivi C:66-70,75-82,85-93,96-103,177-183
3ivi A:66-70,72-82,86-93,96-103,177-183
2qz3 A:49-56,61-74,75-86,102-114,121-133
2qz3 B:50-56,61-74,75-86,102-114,121-133
2wkc B:0-9,22-31,43-49,64-71,72-80
2wkc A:0-9,21-31,43-49,63-71,72-80
3tpj A:5-9,14-21,24-34,37-42,116-122
3tpr A:5-9,14-21,24-32,35-42,116-122
3k5g B:5-9,14-21,24-32,35-42,116-122
3k41 A:43-50,90-97,112-119,124-135,141-150
3k41 B:43-50,90-97,112-119,124-135,141-150
2jen A:117-129,129-142,153-160,179-192,194-205
3m4f D:73-83,86-97,100-107,128-140,146-159
3m4f C:73-83,86-97,100-107,128-140,146-159
3r2i A:58-64,69-78,79-86,108-112,114-119
3ooz A:67-72,73-83,86-94,97-104,178-184
3rth A:5-10,14-21,24-34,37-42,116-122
3prx X:58-64,71-78,79-86,107-111,114-120
3prx Y:58-64,71-78,79-86,107-111,114-120
3dv5 C:5-9,11-21,24-32,35-43,116-122
3dv5 A:5-9,14-21,24-32,35-42,116-122
3cp0 A:29-33,36-42,43-51,66-70,71-78
3cp0 A:29-33,36-42,43-51,59-66,71-78
3hd8 B:49-56,62-74,75-87,102-114,121-133
2cqs B:753-760,766-775,776-785,793-798,813-822
2cqs A:753-760,766-775,776-785,793-798,813-822
2xsg A:686-690,695-702,704-713,720-727,744-752
2xsg B:686-690,694-702,704-713,720-727,744-752
3mxn B:33-38,70-77,78-85,107-112,114-120
3msk A:5-10,11-21,24-32,35-42,116-122
2kvb A:620-626,667-675,687-697,702-710,712-721
3nsh A:11-15,20-27,30-38,41-48,122-128
3nsh B:11-15,17-27,30-38,41-48,122-128
2vg9 A:72-87,90-100,109-116,134-145,154-164
3ru1 A:5-10,11-21,24-32,35-42,116-122
3act B:753-760,766-775,776-785,793-798,813-822
3act A:753-760,766-775,776-785,793-798,813-822
2wf0 A:66-70,75-82,85-95,98-103,177-183
3h0b C:5-9,14-21,24-34,37-42,116-122
3buh A:5-9,14-21,24-32,35-42,116-122
3msj C:5-9,14-21,24-32,35-42,116-122
3msj A:5-9,14-21,24-34,37-42,116-122
2qej D:28-33,39-48,49-56,77-82,84-90
2qej C:28-33,39-48,49-56,78-82,84-90
1jbj A:44-50,57-65,72-77,164-173,174-185
1jbj A:8-14,57-65,72-77,164-173,174-185
2v5p B:1689-1693,1737-1747,1757-1768,1772-1782,1783-1792
2v5p A:1831-1837,1880-1888,1949-1957,1962-1973,1975-1984
2v5p A:1545-1551,1586-1593,1606-1616,1622-1632,1633-1643
2v5p A:1721-1726,1737-1746,1758-1768,1772-1782,1783-1792
2v5p A:1689-1693,1737-1746,1758-1768,1772-1782,1783-1792
2v5p B:1721-1728,1737-1747,1757-1768,1772-1782,1783-1792
2v5p B:1545-1551,1586-1593,1606-1616,1622-1632,1633-1643
2v5p B:1831-1837,1880-1888,1949-1959,1964-1973,1975-1984