List of the counted superfamily hits for pattern ID: 33 (enumeration index: query186) of S5

List of the counted superfamily hits for pattern ID: 33 (enumeration index: query186) of S5

SCOP superfamily ID superfamiily description corresponding fold description
b.49.3Aminopeptidase/glucanase lid domain Domain of alpha and beta subunits of F1 ATP synthase-like barrel, closed; n=6, S=8; greek-key
b.58.1PK beta-barrel domain-like PK beta-barrel domain-like barrel, closed; n=7, S=10; complex topology
f.46.1HlyD-like secretion proteins HlyD-like secretion proteins consists of three domains: beta-barrel (res. 29-38,170-259; scop_cf 50412); barrel-sandwich hybrid (39-72,135-169; scop_sf 51230) and long alpha-hairpin (73-134; scop_cf 46556)
b.21.1Virus attachment protein globular domain Virus attachment protein globular domain sandwich, 10 strands in 2 sheets; greek-key
b.44.1EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain probably related to the second domain and its superfamiy by a circular permutation ! Elongation factor/aminomethyltransferase common domain barrel, closed; n=6, S=10; greek-key
e.56.1YaeB-like YaeB-like 2 domains; d1: [beta-barrel (n=6, S=10), similar to the Reductase/isomerase/elongation factor common domain fold (scop_cf 50412), provides homodimerisation interface]; d2: [alpha+beta (disordered)]
e.35.1Membrane penetration protein mu1 Membrane penetration protein mu1 4 domains: three intertwined predominately alpha domains and one jelly-roll beta-sandwich
d.22.1GFP-like GFP-like beta-sheet folds into a barrel (n=11, S=14) around the central helix
e.10.1Prokaryotic type I DNA topoisomerase duplication: the protein chain passing through the domains 2-4 makes two structural repeats ! The active site is formed by the toprim and "winged helix" domains (domains 1 and 4); these two domains are also found in the type II topoisomerase (DNA gyrase A) and in the alpha subunit of topoisomerase IV ! Prokaryotic type I DNA topoisomerase 4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8
b.43.2FucI/AraA C-terminal domain-like Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key
b.152.1Flagellar hook protein flgE Flagellar hook protein flgE consists of two different domains; d1: [complex fold made of bifurcated beta-sheets]; d2 (inserted into d1): [beta-sandwich; 8 strands in 2 sheets]