1. b.60.1 Lipocalins bind hydrophobic ligands in their interior !
Lipocalins barrel, closed or opened; n=8, S=12; meander
1avg d1avgi_ I:23-29,36-44,49-57,65-72,79-87
2. d.115.1 YrdC/RibB
YrdC/RibB core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
1k7j d1k7ja_ A:65-69,97-103,117-123,183-189,190-199
1jcu d1jcua_ A:64-68,96-102,115-121,177-183,187-192
1kk9 d1kk9a_ A:65-69,96-103,117-123,182-187,192-197
3. d.113.1 Nudix
Nudix beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet ! contains beta-grasp motif
1iry d1irya_ A:3-12,64-75,79-88,132-141,143-153
4. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1fnm d1fnma2 A:11-19,68-75,76-83,353-360,361-366
2efg d2efga2 A:11-19,68-75,76-83,353-360,361-366
5. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
1pn6 d1pn6a_ A:11-19,68-75,76-83,353-360,361-366
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 257 (enumeration index: query1955) of S5
3q93 A:3-15,63-75,79-89,132-141,143-153
3q93 B:3-15,63-75,79-89,132-141,143-153
2wri Y:11-19,69-75,76-83,353-360,361-366
3l7v A:59-63,92-98,123-130,203-208,230-236
2xsy Y:11-19,69-75,76-83,353-360,361-366
2xex B:9-17,66-73,74-81,354-360,361-366
2xex A:9-17,66-73,74-81,354-360,361-366
3zr1 B:3-13,64-75,79-89,132-141,143-153
3zr1 A:3-15,63-75,79-89,132-141,143-153
3aje A:65-69,98-105,117-123,182-187,191-198
2xuy Y:11-19,69-75,76-83,353-360,361-366
3frn A:24-29,54-61,79-86,107-116,145-156
2wrk Y:11-19,69-75,76-83,353-360,361-366
2eqa A:65-69,98-105,117-123,182-187,192-198
3fk9 B:1-12,56-71,72-86,131-140,142-151
3fk9 A:1-12,56-71,72-86,131-140,142-151
3zr0 B:3-13,64-75,79-89,132-141,143-153
3zr0 A:3-15,63-75,79-89,132-141,143-153
1zn0 B:11-19,68-75,76-83,353-360,361-366
2om7 L:11-19,68-75,76-83,353-360,361-366