Observed motif hits of pattern ID: 888 (enumeration index: query20) of S5

List of motif hits assigned to SCOP superfamilies for pattern ID: 888 (enumeration index: query20) of S5
The counted superfamily is marked in red

1.   d.131.1       DNA clamp    
                   DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
                   1b77  d1b77c1  C:4-19,19-25,27-33,37-44,213-220
                   1b77  d1b77a1  A:4-19,19-25,27-33,37-44,213-220
                   1b8h  d1b8hc1  C:4-19,19-26,28-33,37-43,213-220
                   1b8h  d1b8hb1  B:4-19,19-27,28-33,37-43,213-220
                   1czd  d1czda1  A:1004-1019,1019-1026,1028-1033,1037-1043,1213-1220
                   1b77  d1b77b1  B:4-19,19-27,28-33,37-43,213-220
                   1czd  d1czdc1  C:3004-3019,3019-3027,3028-3033,3037-3043,3213-3220
                   1czd  d1czdb1  B:2004-2019,2019-2027,2028-2033,2037-2043,2213-2220
                   1b8h  d1b8ha1  A:4-19,19-24,28-33,37-43,213-220

2.   e.10.1        Prokaryotic type I DNA topoisomerase  duplication: the protein chain passing through the domains 2-4 makes two structural repeats ! The active site is formed by the toprim and "winged helix" domains (domains 1 and 4); these two domains are also found in the type II topoisomerase (DNA gyrase A) and in the alpha subunit of topoisomerase IV !   
                   Prokaryotic type I DNA topoisomerase 4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8
                   1gl9  d1gl9b3  B:58-71,72-77,526-533,534-543,544-553
                   1gl9  d1gl9c3  C:58-71,72-77,526-533,534-543,544-553

3.   c.1.8         (Trans)glycosidases    
                   TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
                   1we5  d1we5c4  C:520-535,535-540,607-611,613-618,659-665

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 888 (enumeration index: query20) of S5

3ifv  A:7-23,24-28,32-40,44-53,233-242
2ztz  B:1-15,22-30,98-106,147-154,155-166
2p3e  A:2-9,10-15,35-40,286-302,365-376
2p3e  B:2-9,10-15,35-40,286-302,365-376
3oum  A:145-157,177-184,199-206,208-215,218-223
3pkv  A:145-157,177-184,199-206,208-215,218-222
3oul  A:145-157,177-184,199-206,208-215,218-223
2zu1  B:1-15,22-30,98-106,147-154,155-166
2ztx  A:1-15,22-30,98-106,148-154,155-166
1yby  B:98-105,107-117,127-136,170-177,178-185