1. d.162.1 LDH C-terminal domain-like
LDH C-terminal domain-like unusual fold, defines family
1pzf d1pzfb2 B:159-163,246-264,264-272,288-295,297-303
1pzh d1pzha2 A:159-163,246-264,264-272,288-295,297-303
1lld d1lldb2 B:118-124,237-254,254-260,279-284,285-289
1lld d1lldb2 B:144-150,237-254,254-260,279-284,285-289
1lld d1llda2 A:118-124,237-254,254-260,279-284,285-289
1lth d1lthr2 R:144-150,236-254,254-260,279-284,286-291
1lld d1llda2 A:144-150,237-254,254-260,279-284,285-289
1hye d1hyea2 A:142-146,231-246,246-254,270-277,279-284
1lth d1ltht2 T:118-123,237-254,254-260,279-284,285-289
1pzh d1pzha2 A:133-138,246-264,264-272,288-295,297-303
1pzf d1pzfb2 B:133-138,246-264,264-272,288-295,297-303
1up4 d1up4d2 D:133-139,293-308,310-316,330-340,341-345
1up4 d1up4f2 F:133-139,293-308,310-316,330-340,341-345
1hye d1hyea2 A:116-121,231-246,246-254,270-277,279-284
1i10 d1i10c2 C:156-162,247-265,265-271,291-296,298-303
2j5k d2j5kd2 D:133-139,246-264,264-270,290-295,297-303
2j5q d2j5qb2 B:133-138,246-264,264-270,290-295,297-303
2j5r d2j5rb2 B:133-138,246-264,264-270,290-295,297-303
1o6z d1o6zb2 B:133-139,246-264,264-270,290-295,297-303
2j5r d2j5rd2 D:133-139,246-264,264-270,290-295,297-303
2j5q d2j5qd2 D:133-139,246-264,264-270,290-295,297-303
1hyh d1hyha2 A:136-142,248-266,266-272,285-292,294-299
1up4 d1up4a2 A:133-139,291-308,310-316,330-340,341-345
1pzf d1pzfc2 C:159-163,246-264,264-270,290-295,297-303
1lth d1ltht2 T:77-82,237-254,254-260,279-284,285-289
1up7 d1up7f2 F:133-139,291-308,310-316,330-340,341-345
1o6z d1o6zc2 C:133-139,246-264,264-270,290-295,297-303
1pzg d1pzgc2 C:159-163,246-264,264-270,290-295,297-303
1hyh d1hyhb2 B:136-142,248-266,266-272,285-292,294-299
1lld d1llda2 A:77-83,237-254,254-260,279-284,285-289
1s6y d1s6ya2 A:143-149,318-333,333-339,360-365,366-371
1pzh d1pzhc2 C:159-163,246-264,264-270,290-295,297-303
1pzg d1pzgd2 D:159-163,246-264,264-270,290-295,297-303
1up6 d1up6b2 B:133-139,292-308,310-316,330-340,341-345
1pzf d1pzfa2 A:159-163,246-264,264-270,290-295,297-303
1pzg d1pzga2 A:159-163,246-264,264-270,290-295,297-303
1lld d1lldb2 B:77-83,237-254,254-260,279-284,285-289
1up6 d1up6d2 D:133-139,291-308,310-316,330-340,341-345
1up4 d1up4e2 E:133-139,291-308,310-316,330-340,341-345
1pzf d1pzfd2 D:159-163,246-264,264-270,290-295,297-303
2j5q d2j5qa2 A:133-139,246-264,264-270,290-295,297-303
1pzh d1pzhd2 D:159-163,246-264,264-270,290-295,297-303
1hyh d1hyha2 A:162-166,248-266,266-272,285-292,294-299
1lth d1lthr2 R:118-124,236-254,254-260,279-284,286-291
1hyh d1hyhb2 B:162-166,248-266,266-272,285-292,294-299
1hyh d1hyhd2 D:162-166,248-266,266-272,285-292,294-299
1hyh d1hyhc2 C:162-166,248-266,266-272,285-292,294-299
1xiv d1xiva2 A:159-163,246-264,264-270,290-295,297-303
1up6 d1up6g2 G:133-139,293-308,310-316,330-340,341-347
1u5a d1u5aa2 A:159-163,246-264,264-270,290-295,297-303
1t24 d1t24a2 A:159-163,246-264,264-270,290-295,297-303
1up6 d1up6e2 E:133-139,295-308,310-316,330-340,341-347
1xiv d1xiva2 A:133-138,246-264,264-270,290-295,297-303
1t24 d1t24a2 A:133-138,246-264,264-270,290-295,297-303
1u5a d1u5aa2 A:133-138,246-264,264-270,290-295,297-303
1up4 d1up4d2 D:157-161,293-308,310-316,330-340,341-345
1i10 d1i10c2 C:130-136,247-265,265-271,291-296,298-303
1up4 d1up4f2 F:157-161,293-308,310-316,330-340,341-345
1up6 d1up6g2 G:157-161,293-308,310-316,330-340,341-347
1pzg d1pzga2 A:133-138,246-264,264-270,290-295,297-303
1up4 d1up4b2 B:133-139,292-308,310-316,330-340,341-347
1pzf d1pzfa2 A:133-138,246-264,264-270,290-295,297-303
2ldb d2ldbc2 C:157-161,247-265,265-271,290-295,297-302
2ldb d2ldbb2 B:157-161,247-265,265-271,290-295,297-302
2ldb d2ldbd2 D:157-161,247-265,265-271,290-295,297-302
2ldb d2ldba2 A:157-161,247-265,265-271,290-295,297-302
1pzg d1pzgd2 D:133-138,246-264,264-270,290-295,297-303
1pzg d1pzgc2 C:133-138,246-264,264-270,290-295,297-303
1lth d1ltht2 T:144-148,237-254,254-260,279-284,285-289
1b8u d1b8ua2 A:127-133,241-259,264-268,284-291,292-297
1up4 d1up4h2 H:133-139,292-308,310-316,330-340,341-347
1pzf d1pzfd2 D:133-138,246-264,264-270,290-295,297-303
1pzh d1pzhc2 C:133-138,246-264,264-270,290-295,297-303
1pzf d1pzfc2 C:133-138,246-264,264-270,290-295,297-303
1pzh d1pzhd2 D:133-138,246-264,264-270,290-295,297-303
1up7 d1up7e2 E:133-139,291-308,310-316,330-340,341-347
2j5q d2j5qb2 B:159-163,246-264,264-270,290-295,297-303
1uxi d1uxia2 A:139-143,225-243,243-249,268-273,275-280
1o6z d1o6zb2 B:159-163,246-264,264-270,290-295,297-303
1up7 d1up7c2 C:133-139,291-308,310-316,330-340,341-347
1up4 d1up4g2 G:133-139,291-308,310-316,330-340,341-347
1up7 d1up7g2 G:133-139,291-308,310-316,330-340,341-347
2j5r d2j5rd2 D:159-163,246-264,264-270,290-295,297-303
1up7 d1up7a2 A:133-139,291-308,310-316,330-340,341-347
2j5k d2j5kd2 D:159-163,246-264,264-270,290-295,297-303
1u8x d1u8xx2 X:142-148,318-334,334-340,361-366,367-372
1up4 d1up4c2 C:133-139,291-308,310-316,330-340,341-347
2j5q d2j5qd2 D:159-163,246-264,264-270,290-295,297-303
1o6z d1o6zc2 C:159-163,246-264,264-270,290-295,297-303
2j5r d2j5rb2 B:159-163,246-264,264-270,290-295,297-303
1up7 d1up7b2 B:133-139,291-308,310-316,330-340,341-347
1up6 d1up6a2 A:133-139,291-308,310-316,330-340,341-347
1s6y d1s6ya2 A:167-171,318-333,333-339,360-365,366-371
1up7 d1up7f2 F:157-161,291-308,310-316,330-340,341-345
1up7 d1up7h2 H:133-139,291-308,310-316,330-340,341-347
1up4 d1up4h2 H:157-161,292-308,310-316,330-340,341-347
1up6 d1up6b2 B:157-161,292-308,310-316,330-340,341-345
1up4 d1up4b2 B:157-161,292-308,310-316,330-340,341-347
1up4 d1up4a2 A:157-161,291-308,310-316,330-340,341-345
2j5q d2j5qa2 A:159-163,246-264,264-270,290-295,297-303
1up7 d1up7g2 G:157-161,291-308,310-316,330-340,341-347
1up4 d1up4e2 E:157-161,291-308,310-316,330-340,341-345
2ldb d2ldba2 A:131-136,247-265,265-271,290-295,297-302
2ldb d2ldbc2 C:131-136,247-265,265-271,290-295,297-302
2ldb d2ldbb2 B:131-136,247-265,265-271,290-295,297-302
2ldb d2ldbd2 D:131-136,247-265,265-271,290-295,297-302
1up7 d1up7b2 B:157-161,291-308,310-316,330-340,341-347
1up6 d1up6d2 D:157-161,291-308,310-316,330-340,341-345
1uxi d1uxia2 A:113-118,225-243,243-249,268-273,275-280
1up6 d1up6a2 A:157-161,291-308,310-316,330-340,341-347
1i10 d1i10g2 G:156-160,247-265,265-271,291-296,298-304
1i10 d1i10d2 D:156-160,247-265,265-271,291-296,298-303
1hyh d1hyhd2 D:136-143,248-266,266-272,285-292,294-299
1hyh d1hyhc2 C:136-143,248-266,266-272,285-292,294-299
1i10 d1i10d2 D:130-135,247-265,265-271,291-296,298-303
1u8x d1u8xx2 X:166-170,318-334,334-340,361-366,367-372
1i10 d1i10g2 G:130-135,247-265,265-271,291-296,298-304
1hyg d1hyga2 A:142-146,228-246,246-254,264-277,279-284
1hyg d1hygb2 B:142-146,228-246,246-254,264-277,279-284
1hyg d1hyga2 A:116-121,228-246,246-254,264-277,279-284
1hyg d1hygb2 B:116-121,228-246,246-254,264-277,279-284
1gv0 d1gv0a2 A:112-117,224-242,244-250,259-271,274-279
1bdm d1bdma2 A:123-129,241-259,265-269,286-293,295-299
1gv1 d1gv1b2 B:112-117,224-242,244-250,259-271,274-279
1pzh d1pzhb2 B:133-138,246-264,264-272,281-295,297-303
1pzg d1pzgb2 B:133-138,246-264,264-272,281-295,297-303
1guz d1guza2 A:112-118,224-242,242-250,259-272,274-279
2. b.43.3 Translation proteins
Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key
2bm0 d2bm0a1 A:11-19,90-102,309-319,323-332,371-379
2bv3 d2bv3a1 A:11-19,91-102,309-319,323-332,371-379
2bm1 d2bm1a1 A:11-19,91-102,309-319,323-332,371-379
1efg d1efga1 A:11-19,89-101,309-319,323-332,371-379
1ktv d1ktvb1 B:11-19,90-102,309-319,323-332,371-379
1dar d1dara1 A:11-19,90-101,308-319,323-332,371-379
1ktv d1ktva1 A:11-19,90-102,309-319,323-332,371-379
1zm4 d1zm4c1 C:18-26,111-122,377-390,393-402,450-458
1u2r d1u2ra1 A:18-26,112-122,377-390,393-402,450-458
2npf d2npfb1 B:18-26,111-122,377-390,393-402,450-458
1zm3 d1zm3c1 C:18-26,111-122,377-390,393-402,450-458
1zm2 d1zm2a1 A:18-26,111-122,377-390,393-402,450-458
1zm9 d1zm9a1 A:18-26,111-122,377-390,393-402,450-458
1zm9 d1zm9c1 C:18-26,111-122,377-390,393-402,450-458
1elo d1eloa1 A:11-19,90-102,308-319,323-332,371-379
2p8x d2p8xt1 T:18-26,112-122,377-389,393-402,450-458
2e1r d2e1ra1 A:18-26,110-122,378-389,393-402,450-458
2dy1 d2dy1a1 A:73-82,87-99,284-294,298-307,344-352
1eft d1efta1 A:74-83,88-99,221-232,234-244,282-291
1wdt d1wdta1 A:73-82,87-99,284-295,297-307,344-352
2dy1 d2dy1a1 A:7-16,87-99,284-294,298-307,344-352
1n0u d1n0ua1 A:18-26,112-122,378-383,393-402,450-458
1wdt d1wdta1 A:7-16,87-99,284-295,297-307,344-352
1n0v d1n0vd1 D:18-26,111-122,378-383,393-402,450-458
2npf d2npfa1 A:18-26,111-122,378-383,393-402,450-458
1ha3 d1ha3a1 A:74-82,88-99,221-228,234-244,282-291
1n0v d1n0vc1 C:18-26,111-122,377-383,393-402,450-458
1zm4 d1zm4a1 A:18-26,111-122,377-383,393-402,450-458
1zm3 d1zm3a1 A:18-26,111-122,377-383,393-402,450-458
1zm4 d1zm4e1 E:18-26,111-122,377-383,393-402,450-458
1zm3 d1zm3e1 E:18-26,111-122,377-383,393-402,450-458
1zm9 d1zm9e1 E:18-26,111-122,377-383,393-402,450-458
1zm2 d1zm2e1 E:18-26,111-122,377-383,393-402,450-458
1zm2 d1zm2c1 C:18-26,111-122,377-383,393-402,450-458
1exm d1exma1 A:74-82,88-99,221-226,234-244,282-291
2bm0 d2bm0a1 A:76-83,90-102,309-319,323-332,371-379
2pmd d2pmda1 A:83-94,100-112,213-222,235-244,294-300
2aho d2ahoa1 A:83-95,100-111,213-222,235-244,294-300
1ha3 d1ha3b1 B:74-82,88-99,221-226,234-244,282-291
1b23 d1b23p1 P:74-83,88-99,221-226,234-244,284-291
2bm1 d2bm1a1 A:76-83,91-102,309-319,323-332,371-379
2pmd d2pmdb1 B:83-94,100-111,213-222,235-244,294-300
2qmu d2qmua1 A:83-95,100-111,213-222,235-244,294-300
1zm2 d1zm2a1 A:96-104,111-122,377-390,393-402,450-458
1zm4 d1zm4c1 C:96-104,111-122,377-390,393-402,450-458
1zm9 d1zm9a1 A:96-104,111-122,377-390,393-402,450-458
1zm3 d1zm3c1 C:96-104,111-122,377-390,393-402,450-458
1zm9 d1zm9c1 C:96-104,111-122,377-390,393-402,450-458
2bv3 d2bv3a1 A:76-83,91-102,309-319,323-332,371-379
1ktv d1ktva1 A:76-83,90-102,309-319,323-332,371-379
1ktv d1ktvb1 B:76-83,90-102,309-319,323-332,371-379
1elo d1eloa1 A:76-83,90-102,308-319,323-332,371-379
1ttt d1tttb1 B:74-82,88-99,221-228,234-244,284-291
1dar d1dara1 A:76-83,90-101,308-319,323-332,371-379
1efg d1efga1 A:76-83,89-101,309-319,323-332,371-379
2plf d2plfa1 A:83-94,100-108,213-222,235-244,294-300
1ob2 d1ob2a1 A:73-82,87-98,210-215,223-233,272-279
2bvn d2bvna1 A:73-81,87-98,210-215,224-233,270-279
2npf d2npfb1 B:96-104,111-122,377-390,393-402,450-458
1u2r d1u2ra1 A:96-104,112-122,377-390,393-402,450-458
2p8z d2p8zt1 T:96-104,112-122,377-388,393-402,450-458
2p8y d2p8yt1 T:96-104,112-122,377-388,393-402,450-458
1ttt d1ttta1 A:74-82,88-99,221-226,234-244,284-291
1zc8 d1zc8y1 Y:74-82,88-99,221-226,234-244,284-291
2bvn d2bvnb1 B:73-81,87-98,210-215,223-233,270-279
1ttt d1tttc1 C:74-82,88-99,221-226,234-244,284-291
1wb1 d1wb1a1 A:58-65,68-80,185-195,201-209,246-252
1n0v d1n0vd1 D:96-104,111-122,378-383,393-402,450-458
2p8x d2p8xt1 T:96-104,112-122,377-389,393-402,450-458
2p8w d2p8wt1 T:96-104,112-122,377-388,393-402,450-458
2qn6 d2qn6a1 A:83-94,96-107,213-222,235-244,294-300
1n0u d1n0ua1 A:96-104,112-122,378-383,393-402,450-458
2e1r d2e1ra1 A:96-104,110-122,378-389,393-402,450-458
1s0u d1s0ua1 A:106-117,119-130,236-245,258-267,317-323
1zm4 d1zm4a1 A:96-104,111-122,377-383,393-402,450-458
2npf d2npfa1 A:96-104,111-122,378-383,393-402,450-458
1zm3 d1zm3a1 A:96-104,111-122,377-383,393-402,450-458
1zm4 d1zm4e1 E:96-104,111-122,377-383,393-402,450-458
1zm3 d1zm3e1 E:96-104,111-122,377-383,393-402,450-458
1zm2 d1zm2e1 E:96-104,111-122,377-383,393-402,450-458
1n0v d1n0vc1 C:96-104,111-122,377-383,393-402,450-458
1zm9 d1zm9e1 E:96-104,111-122,377-383,393-402,450-458
1zm2 d1zm2c1 C:96-104,111-122,377-383,393-402,450-458
1wb1 d1wb1c1 C:58-65,68-80,186-191,200-209,244-254
1wb3 d1wb3b1 B:58-65,68-80,186-191,200-209,244-254
1wb1 d1wb1b1 B:58-65,68-80,186-191,199-209,244-254
1wb2 d1wb2b1 B:58-65,68-80,186-191,199-209,244-254
3. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
1ex0 d1ex0a4 A:208-217,313-329,331-339,462-468,473-478
1g0d d1g0da4 A:158-167,271-287,289-297,420-427,432-436
1l9n d1l9nb4 B:158-167,271-287,289-297,419-426,431-435
1l9m d1l9mb4 B:158-167,271-287,289-297,419-426,431-435
1l9n d1l9na4 A:158-167,271-287,289-297,419-426,431-435
1ex0 d1ex0b4 B:208-217,313-329,331-339,463-468,473-478
1nud d1nudb4 B:158-167,271-287,289-297,419-426,431-435
1nug d1nuga4 A:158-167,271-287,289-297,419-426,431-435
1l9m d1l9ma4 A:158-167,271-287,289-297,419-426,431-435
1nug d1nugb4 B:158-167,271-287,289-297,419-426,431-435
1f13 d1f13b4 B:208-217,313-329,331-339,463-468,473-478
1ggt d1ggta4 A:208-217,313-329,331-339,462-468,473-477
1nuf d1nufa4 A:158-167,271-287,289-297,419-426,431-435
1evu d1evua4 A:208-217,313-329,331-339,463-468,473-477
1nud d1nuda4 A:158-167,271-287,289-297,419-426,431-435
1fie d1fieb4 B:208-217,313-329,331-339,462-468,473-477
1evu d1evub4 B:208-217,313-329,331-339,463-468,473-477
1f13 d1f13a4 A:208-217,313-329,331-339,463-468,473-477
1ggu d1ggua4 A:208-217,313-329,331-339,463-468,473-477
1fie d1fiea4 A:208-217,313-329,331-339,463-468,473-478
1ggt d1ggtb4 B:208-217,313-329,331-339,463-468,473-477
1ggu d1ggub4 B:208-217,313-329,331-339,463-468,473-477
1qrk d1qrkb4 B:208-217,313-329,331-339,463-468,473-477
1ggy d1ggya4 A:208-217,313-329,331-339,463-468,473-477
1qrk d1qrka4 A:208-217,313-329,331-339,463-468,473-477
4. b.97.1 Cytolysin/lectin some topological similarity to osmotin !
Cytolysin/lectin sandwich, 10 strands in 2 sheets;
1y2x d1y2xa_ A:74-82,100-110,112-119,121-130,134-143
1y2x d1y2xb_ B:75-82,100-110,112-119,121-130,134-143
1y2x d1y2xd_ D:75-82,100-110,112-119,121-130,134-143
1y2w d1y2wa_ A:75-82,100-110,112-119,121-130,134-143
1y2u d1y2ub_ B:75-82,100-110,112-119,121-130,134-143
1y2x d1y2xc_ C:74-83,100-110,112-119,121-130,134-143
1y2v d1y2va_ A:75-82,100-110,112-119,121-130,134-143
1y2w d1y2wb_ B:75-82,100-110,112-119,121-130,134-143
1y2t d1y2tb_ B:75-82,100-110,112-119,121-130,134-143
1y2u d1y2ua_ A:75-82,100-110,112-119,121-130,134-143
1y2t d1y2ta_ A:75-82,100-110,112-119,121-130,134-143
1x99 d1x99a_ A:77-85,103-112,114-121,123-133,136-145
1y2v d1y2vb_ B:75-83,100-110,112-119,121-130,134-143
1x99 d1x99b_ B:77-85,103-112,114-121,123-133,136-145
5. c.55.1 Actin-like ATPase domain duplication contains two domains of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1sz2 d1sz2b1 B:93-99,99-111,129-136,138-148,149-156
1sz2 d1sz2a1 A:93-99,99-111,128-136,138-148,149-156
1bg3 d1bg3b2 B:204-208,208-222,225-231,233-242,253-261
1q18 d1q18b2 B:93-99,99-111,128-136,138-148,149-156
1q18 d1q18a2 A:93-99,99-111,128-136,138-148,149-156
1bg3 d1bg3a2 A:204-208,208-222,225-231,233-243,251-261
1hkc d1hkca2 A:202-208,208-222,225-231,233-243,251-261
1zbs d1zbsa1 A:90-96,96-107,108-117,119-127,128-134
1e4g d1e4gt2 T:154-167,189-199,207-215,216-225,226-238
2ch6 d2ch6d1 D:100-106,106-117,118-126,128-136,138-145
1zc6 d1zc6b2 B:103-109,109-120,123-130,132-140,142-148
6. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
1jqm d1jqmb_ B:12-19,90-102,309-315,325-332,370-374
1s1h d1s1ht_ T:18-26,112-122,378-383,393-402,450-458
1mj1 d1mj1a_ A:74-82,88-99,221-226,234-244,282-291
1qzd d1qzda_ A:73-82,87-98,210-215,223-233,272-279
1s1h d1s1ht_ T:96-104,112-122,378-383,393-402,450-458
1jqm d1jqmb_ B:76-82,90-102,309-315,325-332,374-379
7. c.93.1 Periplasmic binding protein-like I Similar in architecture to the superfamily II but partly differs in topology !
Periplasmic binding protein-like I consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! parallel beta-sheet of 6 strands, order 213456
1qo0 d1qo0a_ A:116-121,283-304,319-323,324-332,333-339
8. d.129.3 Bet v1-like contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix !
TBP-like beta-alpha-beta(4)-alpha
1ulj d1uljc2 C:161-167,178-191,308-317,319-325,327-335
1wql d1wqla2 A:171-177,191-201,318-327,329-335,336-346
1ulj d1ulje2 E:161-167,178-193,308-317,319-325,327-335
1ulj d1ulja2 A:161-167,178-191,308-317,319-325,327-336
1uli d1ulic2 C:161-167,178-193,308-317,319-325,327-336
1uli d1ulia2 A:161-167,178-193,308-317,319-325,327-336
1uli d1ulie2 E:161-167,178-193,308-317,319-325,327-336
2b24 d2b24e2 E:153-159,170-182,292-299,301-312,314-330
2b24 d2b24c2 C:153-159,170-182,292-299,301-312,314-330
2b24 d2b24a2 A:153-159,170-182,292-299,301-312,314-330
2b1x d2b1xa2 A:153-159,170-183,291-299,301-312,314-330
2b1x d2b1xe2 E:153-159,170-183,291-299,301-312,314-330
2b1x d2b1xc2 C:153-159,170-183,292-299,301-312,314-330
9. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
2d40 d2d40a1 A:133-141,216-231,238-244,256-266,317-327
2d40 d2d40d1 D:133-142,216-231,238-244,256-266,317-327
2d40 d2d40c1 C:133-142,216-231,238-244,256-266,317-327
2d40 d2d40b1 B:133-142,216-231,238-244,256-266,317-327
3bu7 d3bu7a1 A:148-157,234-249,256-262,274-283,339-348
2phd d2phdd1 D:148-157,234-252,260-267,279-288,340-350
2phd d2phdc1 C:148-157,234-252,260-267,279-288,340-350
2phd d2phdb1 B:148-157,234-252,260-267,279-288,340-350
10. d.18.1 ssDNA-binding transcriptional regulator domain
ssDNA-binding transcriptional regulator domain helix-swapped dimer of beta(4)-alpha motifs
1l3a d1l3aa_ A:102-118,154-164,169-176,185-195,200-211
1l3a d1l3ac_ C:102-118,154-164,169-175,185-195,200-211
1l3a d1l3ad_ D:102-118,154-164,169-175,185-195,200-211
1l3a d1l3ab_ B:102-118,154-164,169-176,185-195,200-211
11. h.4.1 Variant surface glycoprotein (N-terminal domain)
Antiparallel coiled-coil this is not a true fold; contains at least two very long antiparallel helices
2vsg d2vsgb_ B:2-7,58-113,204-208,211-215,220-226
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 680 (enumeration index: query21) of S5
3qdt B:74-82,100-109,111-118,120-129,133-142
3qdt A:74-82,100-109,111-118,120-129,133-142
3i1f B:83-94,100-111,213-222,235-244,293-300
2v6b A:159-163,246-264,264-270,290-295,297-303
2v6b C:133-138,247-264,264-270,290-295,297-303
2v6b B:133-138,246-264,264-270,290-295,297-303
2v6b A:133-138,246-264,264-270,290-295,297-303
2v6b C:159-163,247-264,264-270,290-295,297-303
2v6b B:159-163,246-264,264-270,290-295,297-303
3gvi B:140-144,231-249,249-255,274-279,281-286
3gvi A:114-119,231-249,249-257,266-279,281-286
3gvi D:140-144,231-249,249-257,266-279,281-286
3gvi C:114-119,231-249,249-257,266-279,281-286
3gvi D:114-119,231-249,249-257,266-279,281-286
3gvi A:140-144,231-249,249-257,266-279,281-286
3gvi F:114-119,231-249,249-257,266-279,281-286
3gvi B:114-119,231-249,249-255,274-279,281-286
3gvi C:140-144,231-249,249-257,266-279,281-286
3gvi E:114-119,231-249,249-257,266-279,281-286
3gvi F:140-144,231-249,249-257,266-279,281-286
3gvi E:140-144,231-249,249-257,266-279,281-286
2hjr E:125-130,242-260,260-268,277-290,292-297
2hjr A:125-130,242-260,260-268,277-290,292-297
2hjr A:151-155,242-260,260-268,277-290,292-297
2hjr K:151-155,242-260,260-268,277-290,292-297
2hjr G:125-130,242-260,260-268,277-290,292-297
2hjr E:151-155,242-260,260-268,277-290,292-297
2hjr D:125-130,242-260,260-268,277-290,292-297
2hjr K:125-130,242-260,260-268,277-290,292-297
2hjr D:151-155,242-260,260-268,277-290,292-297
2hjr G:151-155,242-260,260-268,277-290,292-297
2ych A:139-149,172-182,191-200,201-210,211-220
3fih Z:73-82,87-99,210-220,224-233,272-279
2y14 Z:74-83,88-99,221-226,234-244,284-291
3uk0 A:118-123,304-328,348-352,353-360,361-366
3uk0 A:134-139,304-328,348-352,353-360,361-366
2d4a B:110-115,221-239,239-247,256-269,271-276
2d4a D:110-115,221-239,239-247,256-269,271-276
2d4a B:136-140,221-239,239-247,256-269,271-276
2d4a C:136-140,221-239,239-247,256-269,271-276
2d4a D:136-140,221-239,239-247,256-269,271-276
2d4a A:110-115,221-239,239-247,256-269,271-276
2d4a C:110-115,221-239,239-247,256-269,271-276
2d4a A:136-140,221-239,239-247,256-269,271-276
3qdx B:74-82,100-109,111-118,120-129,133-142
3qdx A:74-82,100-109,111-118,120-129,133-142
2frm B:133-138,246-264,264-272,288-295,297-303
2frm C:133-138,246-264,264-272,288-295,297-303
2frm A:159-163,246-264,264-272,288-295,297-303
2frm C:159-163,246-264,264-272,288-295,297-303
2frm B:159-163,246-264,264-272,288-295,297-303
2frm A:133-138,246-264,264-272,288-295,297-303
2xr8 E:170-176,190-200,318-327,329-335,337-346
2xr8 S:170-176,187-202,318-327,329-335,337-346
2xr8 C:170-176,190-200,318-327,329-335,337-346
2xr8 M:170-176,190-200,318-327,329-335,337-346
2xr8 U:170-176,190-202,318-327,329-335,337-346
2xr8 W:170-176,190-202,318-327,329-335,337-346
2xr8 O:170-176,190-200,318-327,329-335,337-346
2xr8 G:170-176,190-200,318-327,329-335,337-346
2xr8 Q:170-176,187-202,318-327,329-335,337-346
2xr8 A:170-176,187-202,318-327,329-335,337-346
2xr8 I:170-176,190-200,318-327,329-335,337-345
2xr8 K:170-176,187-202,318-327,329-335,337-346
2r7v A:258-265,498-510,674-678,679-684,685-689
3rrl B:107-111,122-132,165-170,171-178,179-187
3rrl D:107-111,122-132,165-170,171-178,179-187
2zpo A:42-49,50-62,68-73,102-109,114-119
3b82 C:96-104,111-122,377-390,391-402,450-458
3b82 E:96-104,111-122,378-383,393-402,450-458
3b82 C:18-26,111-122,377-390,391-402,450-458
3b82 A:96-104,111-122,378-383,393-402,450-458
3b82 E:18-26,111-122,378-383,393-402,450-458
3b82 A:18-26,111-122,378-383,393-402,450-458
3lm2 B:93-98,98-108,111-119,121-129,131-135
3lm2 A:93-98,98-108,111-119,121-129,131-135
3t0n A:139-144,303-324,338-344,345-353,354-358
2e2p B:88-94,94-105,108-115,117-125,126-132
2e2p A:88-94,94-105,108-115,117-125,126-132
2y12 Z:74-83,88-100,220-232,234-244,284-291
2y16 Z:74-83,88-99,220-232,234-244,284-291
2ewd A:159-163,246-264,264-272,288-295,297-303
2ewd B:133-138,246-264,264-272,288-295,297-303
2ewd B:159-163,246-264,264-272,288-295,297-303
2ewd A:133-138,246-264,264-272,288-295,297-303
2e2q B:88-94,94-105,108-115,117-125,126-132
2e2q A:88-94,94-105,108-115,117-125,126-132
2y0u Z:74-83,88-100,221-226,234-244,282-291
3dny T:18-26,112-122,378-383,393-402,450-458
3dny T:96-104,112-122,378-383,393-402,450-458
3p3m B:83-95,96-107,213-222,235-244,294-300
3p3m F:83-95,96-107,213-222,235-244,294-300
3p3m A:83-94,96-107,213-222,235-244,294-300
3p3m D:83-94,96-107,213-222,235-244,294-300
3p3m C:83-94,96-107,213-222,235-244,294-300
3p3m E:83-94,96-107,213-222,235-244,294-300
3nl1 A:148-157,234-252,260-266,279-288,340-350
2xrx Q:170-176,187-202,318-327,329-335,337-346
2xrx K:170-176,187-202,318-327,329-335,337-346
2xrx I:170-176,187-202,318-327,329-335,337-346
2xrx O:170-176,190-200,318-327,329-335,337-346
2xrx A:170-176,187-202,318-327,329-335,337-346
2xrx E:170-176,190-200,318-327,329-335,337-346
2xrx W:170-176,187-202,318-327,329-335,337-346
2xrx U:170-176,190-200,318-327,329-335,337-346
2xrx M:170-176,190-200,318-327,329-335,337-346
2xrx G:170-176,187-202,318-327,329-335,337-346
2xrx C:170-176,190-200,318-327,329-335,337-346
2xrx S:170-176,187-202,318-327,329-335,337-346
2o0f A:81-88,96-106,296-305,313-322,361-370
2wrq Z:74-81,88-99,221-226,235-244,283-291
3qdy B:74-82,100-109,111-118,120-129,133-142
3qdy A:74-82,100-109,111-118,120-129,133-142
2j7k A:11-19,90-102,309-319,323-332,371-379
2j7k A:76-83,90-102,309-319,323-332,371-379
3pen A:83-95,100-111,213-222,235-244,294-300
3sg0 A:112-117,302-319,344-350,351-358,359-364
2fn7 B:133-138,246-264,264-272,288-295,297-303
2fn7 A:159-163,246-264,264-272,288-295,297-303
2fn7 B:159-163,246-264,264-272,288-295,297-303
2fn7 A:133-138,246-264,264-272,288-295,297-303
3ly6 C:163-172,276-292,294-302,423-430,435-439
3ly6 B:163-172,276-292,294-302,423-430,435-439
3ly6 A:163-172,276-292,294-302,423-430,435-439
2y0y Z:74-83,88-100,220-232,234-244,284-291
3zvo Y:12-20,92-104,296-307,313-322,361-368
3zvo Y:82-88,92-104,296-307,313-322,361-368
2ofe B:73-80,98-108,110-117,119-129,132-141
2ofe A:73-81,98-108,110-117,119-129,132-141
3om9 B:133-138,246-264,264-272,281-295,297-303
3om9 B:159-163,246-264,264-272,281-295,297-303
3om9 C:159-163,246-264,264-270,290-295,297-303
3om9 D:159-163,246-264,264-270,290-295,297-303
3om9 A:133-138,246-264,264-272,281-295,297-303
3om9 D:133-138,246-264,264-270,290-295,297-303
3om9 C:133-138,246-264,264-270,290-295,297-303
3n1k A:67-83,119-129,134-141,150-160,165-176
3gvh D:114-119,231-249,249-255,274-279,281-286
3gvh D:140-144,231-249,249-255,274-279,281-286
2r7q A:258-265,498-510,674-678,679-684,685-689
3p7m A:114-120,231-249,249-257,274-281,282-287
3p7m A:73-79,231-249,249-257,274-281,282-287
3p7m A:140-144,231-249,249-257,274-281,282-287
3fic Z:74-82,88-99,221-228,234-244,282-291
3nep X:133-138,246-264,264-272,282-295,297-303
3nep X:159-163,246-264,264-272,282-295,297-303
3b8h E:96-104,111-122,378-383,393-402,450-458
3b8h C:96-104,111-122,377-390,391-402,450-458
3b8h A:18-26,111-122,377-383,393-402,450-458
3b8h E:18-26,111-122,378-383,393-402,450-458
3b8h A:96-104,111-122,377-383,393-402,450-458
3b8h C:18-26,111-122,377-390,391-402,450-458
3gzx A:170-176,190-200,316-325,327-333,335-344
2ywh A:5-13,86-97,193-198,207-216,254-262
2ywh A:70-79,86-97,193-198,207-216,254-262
2yfj E:170-176,190-202,318-327,329-335,337-346
2yfj K:170-176,190-200,318-327,329-335,337-346
2yfj G:170-176,190-200,318-327,329-335,337-346
2yfj C:170-176,187-202,318-327,329-335,337-346
2yfj A:170-176,187-202,318-327,329-335,337-346
2yfj I:170-176,190-200,318-327,329-335,337-346
2q1f A:764-774,776-786,791-796,798-804,843-853
2q1f B:769-774,776-786,791-796,798-804,843-853
2uwn A:323-327,337-345,351-358,368-376,377-381
3ho8 B:391-399,495-511,1044-1053,1055-1070,1072-1081
3ho8 C:392-399,495-511,1045-1052,1056-1070,1072-1081
3ho8 A:392-399,495-511,1044-1052,1056-1070,1072-1081
3n1j A:67-83,119-129,134-141,150-160,165-176
1sow B:133-138,246-264,264-272,281-295,297-303
1sow A:133-138,246-264,264-272,281-295,297-303
3b78 C:96-104,111-122,377-390,391-402,450-458
3b78 E:96-104,111-122,378-383,393-402,450-458
3b78 C:18-26,111-122,377-390,391-402,450-458
3b78 A:18-26,111-122,378-383,393-402,450-458
3b78 E:18-26,111-122,378-383,393-402,450-458
3b78 A:96-104,111-122,378-383,393-402,450-458
3nvc A:148-157,234-252,260-266,279-289,340-350
1xi0 B:76-85,103-112,114-121,123-133,136-145
1xi0 A:76-85,103-112,114-121,123-132,136-145
3cw2 B:83-93,103-112,213-222,235-244,294-300
3cw2 A:83-94,99-107,213-222,235-244,294-300
3cw2 E:83-94,100-109,213-222,235-244,294-300
3r9y A:67-82,119-129,134-141,150-160,165-176
3cb4 A:68-77,84-95,191-201,205-214,252-260
3cb4 B:68-77,84-95,191-201,205-214,252-260
3cb4 D:68-77,84-95,191-201,205-214,252-260
3cb4 C:3-11,84-95,191-201,205-214,252-260
3cb4 F:68-77,84-95,191-201,205-214,254-260
3cb4 E:3-11,84-95,191-201,205-214,252-260
3cb4 B:3-11,84-95,191-201,205-214,252-260
3cb4 E:68-77,84-95,191-201,205-214,252-260
3cb4 A:3-11,84-95,191-201,205-214,252-260
3cb4 C:68-77,84-95,191-201,205-214,252-260
3cb4 D:3-11,84-95,191-201,205-214,252-260
2wrn Z:74-81,88-99,221-226,235-244,283-291
3gzy A:170-176,190-200,316-325,327-333,334-344
2e2n B:88-94,94-105,108-115,117-125,126-132
2e2n A:88-94,94-105,108-115,117-125,126-132
2r7x A:258-265,498-510,674-678,679-684,685-689
2r7x B:258-265,498-510,674-678,679-684,685-689
2ywe A:5-13,86-97,193-198,207-216,254-262
2ywe A:70-79,86-97,193-198,207-216,254-262
3n0q A:143-149,155-164,290-297,299-306,307-318
3tr5 D:78-85,93-103,292-302,309-318,358-366
3tr5 A:78-85,93-103,292-302,309-318,358-366
3tr5 B:78-85,93-103,292-302,309-318,358-366
3tr5 C:78-85,93-104,292-302,309-318,359-366
2xsh K:170-176,190-200,318-327,329-335,337-346
2xsh E:170-176,190-200,318-327,329-335,337-346
2xsh G:170-176,190-200,318-327,329-335,337-346
2xsh A:170-176,190-200,318-327,329-335,337-346
2xsh I:170-176,190-200,318-327,329-335,337-346
2xsh C:170-176,190-200,318-327,329-335,337-346
3n1i A:67-83,119-129,134-141,150-160,165-176
3p27 A:244-252,259-269,401-409,418-427,470-480
3p27 B:244-252,258-269,401-409,418-427,470-480
1sov B:133-138,246-264,264-272,281-295,297-303
1sov B:159-163,246-264,264-272,281-295,297-303
1sov A:133-138,246-264,264-272,288-295,297-303
1sov A:159-163,246-264,264-272,288-295,297-303
2elf A:40-48,53-65,173-182,188-196,231-241
2fm3 A:133-138,246-264,264-272,288-295,297-303
2fm3 B:133-138,246-264,264-272,288-295,297-303
2fm3 B:159-163,246-264,264-272,288-295,297-303
2fm3 A:159-163,246-264,264-272,288-295,297-303
3k44 C:78-86,86-108,119-129,130-141,142-153
3k44 B:78-86,86-108,120-129,130-141,142-153
3k44 D:78-86,86-108,120-129,130-141,142-153
3k44 A:78-86,86-108,119-129,130-141,142-153
3n1l A:67-83,119-129,134-140,150-160,165-176
2r7w A:258-265,498-510,674-678,679-684,685-689
3nkt A:148-157,234-252,260-266,279-288,340-350
3izw C:73-80,87-98,210-214,223-233,270-279
2r7s A:258-265,498-510,674-678,679-684,685-689
3d5t A:125-131,239-257,262-266,276-289,290-295
3d5t A:152-156,239-257,262-266,276-289,290-295
3qdu D:74-82,100-109,111-118,120-129,133-142
3qdu A:74-82,102-109,111-118,120-129,133-142
3qdu C:74-82,100-109,111-118,120-129,133-142
3qdu B:74-82,100-109,111-118,120-129,133-142
3qds B:74-82,100-109,111-118,120-129,133-142
3qds A:74-82,100-109,111-118,120-129,133-142
3ukj A:118-123,304-328,348-352,353-360,361-366
3ukj A:134-139,304-328,348-352,353-360,361-366
2y10 Z:74-83,88-99,221-226,234-244,282-291
2h5e A:13-20,96-107,296-304,313-322,361-370
2h5e B:81-88,96-106,296-305,314-322,361-369
2h5e B:13-20,96-106,296-305,314-322,361-369
2h5e A:81-88,96-107,296-304,313-322,361-370
2wus B:124-130,130-140,148-156,157-166,167-179
2fnz A:159-163,246-264,264-272,288-295,297-303
2fnz B:133-138,246-264,264-272,288-295,297-303
2fnz B:159-163,246-264,264-272,288-295,297-303
2fnz A:133-138,246-264,264-272,288-295,297-303
2r7t A:258-265,498-510,674-678,679-684,685-689
3ra0 A:67-83,119-129,133-141,150-160,165-176
3tx6 A:134-139,304-328,348-352,353-360,361-366
3tx6 A:118-123,304-328,348-352,353-360,361-366
3qdv B:74-82,100-109,111-118,120-129,133-142
3qdv A:74-82,100-109,111-118,120-129,133-142
2r7u A:258-265,498-510,674-678,679-684,685-689
3qdw B:74-82,100-109,111-118,120-129,133-142
3qdw A:74-82,100-109,111-118,120-129,133-142
2ofd B:72-81,98-108,110-117,119-129,132-141
2ofd A:73-81,98-108,110-117,119-129,132-141
3r9z A:67-83,119-129,134-141,151-160,165-176
2xso U:170-176,187-202,318-327,329-335,337-346
2xso K:170-176,187-202,318-327,329-335,336-346
2xso I:170-176,190-202,318-327,329-335,337-346
2xso O:170-176,190-200,318-327,329-335,337-346
2xso Q:170-176,190-200,318-327,329-335,337-346
2xso M:170-176,190-200,318-327,329-335,337-346
2xso E:170-176,190-200,318-327,329-335,337-346
2xso C:170-176,190-200,318-327,329-335,337-346
2xso W:170-176,190-200,318-327,329-335,337-346
2xso G:170-176,190-200,318-327,329-335,337-346
2xso S:170-176,190-200,318-327,329-335,337-346
2xso A:170-176,187-202,318-327,329-335,336-346
3p26 A:244-251,258-269,401-409,417-427,470-480
3hut A:151-156,312-333,348-353,356-363,364-370
3n1h A:67-83,119-129,133-141,150-160,165-176
2y18 Z:74-83,88-99,221-226,234-244,282-291
3nst A:148-157,234-252,260-266,279-288,340-350
3h3f E:156-160,247-265,265-271,291-296,298-303
3h3f B:156-162,247-265,265-271,291-296,298-303
3h3f E:130-135,247-265,265-271,291-296,298-303
3h3f A:156-160,247-265,265-271,291-296,298-303
3h3f F:130-136,247-265,265-271,291-296,298-303
3h3f F:156-162,247-265,265-271,291-296,298-303
3h3f B:130-136,247-265,265-271,291-296,298-303
3h3f C:156-160,247-265,265-271,291-296,298-303
3h3f D:130-135,247-265,265-271,291-296,298-304
3h3f C:130-136,247-265,265-271,291-296,298-303
3h3f D:156-160,247-265,265-271,291-296,298-304
3h3f A:130-136,247-265,265-271,291-296,298-303
3hrg A:114-123,141-158,159-168,169-178,179-189
2x0r A:133-139,246-264,264-270,290-295,297-303
2x0r B:133-139,246-264,264-270,290-295,297-303
2x0r A:159-163,246-264,264-270,290-295,297-303
2x0r B:159-163,246-264,264-270,290-295,297-303
2y0w Z:74-83,88-100,221-226,234-244,282-291
3en1 A:159-165,176-185,306-315,317-323,325-333
3eqq A:159-165,176-191,306-315,317-323,325-333
3agj E:83-92,97-108,232-243,247-256,291-301
3agj G:83-92,97-108,233-243,247-256,292-301
3agj C:83-92,97-108,232-238,247-256,292-301
3agj A:83-92,97-108,233-243,247-256,292-301
2r7r A:258-265,498-510,674-678,679-684,685-689
2q2r A:125-130,130-146,176-184,186-195,200-206
2q2r B:125-130,130-146,176-184,186-195,200-206
2ywf A:5-13,86-97,193-198,207-216,254-262
2ywf A:70-79,86-97,193-198,207-216,254-262
2yfi G:170-176,190-200,318-327,329-335,337-346
2yfi E:170-176,187-202,318-327,329-335,337-346
2yfi A:170-176,187-202,318-327,329-335,337-346
2yfi I:170-176,190-200,318-327,329-335,337-346
2yfi C:170-176,190-200,318-327,329-335,337-346
2yfi K:170-176,190-200,318-327,329-335,337-346
3czm B:159-163,246-264,264-272,281-295,297-303
3czm A:159-163,246-264,264-272,281-295,297-303
3czm B:133-138,246-264,264-272,281-295,297-303
3czm A:133-138,246-264,264-272,281-295,297-303
2ywg A:6-13,86-97,193-198,207-216,254-262
2ywg A:70-79,86-97,193-198,207-216,254-262
3nzp A:19-25,30-42,46-51,327-341,509-518
3nzp B:19-25,30-42,46-51,327-342,509-518
3hm8 B:656-662,662-673,679-685,687-696,707-715
3hm8 C:656-662,662-673,679-685,687-696,707-715
3hm8 D:656-662,662-673,679-685,687-696,707-715
3hm8 A:656-662,662-673,679-685,687-696,707-715
2nzt B:652-656,656-667,673-679,681-691,699-709
3nzq A:55-60,71-83,87-92,369-375,559-564
3nzq B:55-60,71-83,87-92,369-375,559-564
2e2o A:88-94,94-105,107-115,117-125,126-132
2ofc B:73-81,98-108,110-117,119-129,132-141
2ofc A:73-81,98-108,110-117,119-129,132-141
2rdo 7:81-88,95-107,317-327,331-340,379-387
2rdo 7:9-17,95-107,317-327,331-340,379-387
3deg C:68-77,84-95,191-201,205-214,254-260
2zit C:96-104,111-122,377-390,391-402,450-458
2zit E:18-26,111-122,378-383,393-402,450-458
2zit E:96-104,111-122,378-383,393-402,450-458
2zit C:18-26,111-122,377-390,391-402,450-458
2zit A:18-26,111-122,378-383,393-402,450-458
2zit A:96-104,111-122,378-383,393-402,450-458