1. e.62.1 Heme iron utilization protein-like
Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold
1u9t d1u9ta1 A:61-69,70-78,120-129,131-139,239-247
2hq2 d2hq2a1 A:61-69,70-78,118-129,131-139,239-247
2j0p d2j0pa1 A:62-71,72-80,120-131,133-141,242-250
2j0r d2j0ra1 A:63-71,72-80,120-131,133-141,241-250
2. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1xp4 d1xp4b2 B:30-38,39-47,247-257,258-269,293-302
1xp4 d1xp4d2 D:30-38,39-47,247-257,258-267,293-302
1xp4 d1xp4a2 A:30-38,39-47,247-257,258-267,293-302
3bec d3beca2 A:18-26,27-35,221-231,232-243,262-271
1nzo d1nzoa2 A:18-26,27-35,221-231,232-243,262-271
1nzu d1nzua2 A:18-26,27-35,221-231,232-243,262-271
1nj4 d1nj4a2 A:18-26,27-35,221-231,232-243,262-271
1xp4 d1xp4c2 C:30-38,39-47,247-257,258-267,293-302
1z6f d1z6fa2 A:18-26,27-35,221-231,232-243,262-271
1hd8 d1hd8a2 A:18-26,27-35,221-231,232-243,262-271
1sdn d1sdna2 A:18-26,27-35,221-231,232-243,262-271
3beb d3beba2 A:18-26,27-35,221-231,232-243,262-271
3. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1te5 d1te5b_ B:13-23,63-73,198-206,207-215,220-227
4. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1zrr d1zrra1 A:1-7,13-20,112-118,119-126,129-137
1zx5 d1zx5a1 A:5-10,50-54,247-255,272-278,281-288
5. b.69.4 WD40 repeat-like also contains 8-bladed propellers !
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
2ce8 d2ce8b1 B:446-452,454-459,679-686,689-695,720-728
6. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1wdj d1wdja_ A:25-32,35-41,74-78,80-84,86-91
1wdj d1wdjc_ C:25-32,35-41,74-78,80-84,86-91
7. b.43.3 Translation proteins
Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key
1xb2 d1xb2a1 A:258-263,271-281,287-294,336-342,382-391
1aip d1aipa1 A:221-226,234-244,250-257,300-306,346-355
1aip d1aipe1 E:221-226,234-244,250-257,300-306,346-355
1ha3 d1ha3b1 B:221-226,234-244,250-257,300-306,346-355
2c77 d2c77a1 A:221-226,234-244,249-257,300-306,346-355
1g7c d1g7ca1 A:244-254,258-267,274-280,320-327,363-372
2c78 d2c78a1 A:221-232,234-244,250-257,300-306,346-355
1eft d1efta1 A:221-232,234-244,250-257,300-306,346-355
1jny d1jnyb1 B:233-244,246-256,262-269,309-315,351-359
1skq d1skqb1 B:233-244,246-256,263-269,309-315,351-359
8. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
1zap d1zapa_ A:2-11,12-21,153-158,165-172,173-177
1eag d1eaga_ A:2-11,12-21,153-158,165-172,173-177
1j71 d1j71a_ A:2-11,12-21,154-159,166-173,174-178
9. b.61.3 D-aminopeptidase, middle and C-terminal domains
Streptavidin-like barrel, closed; n=8, S=10; meander
1ei5 d1ei5a1 A:347-354,355-365,400-408,409-418,486-496
10. f.7.1 Lipovitellin-phosvitin complex; beta-sheet shell regions
Lipovitellin-phosvitin complex; beta-sheet shell regions contains several large open beta-sheets
1lsh d1lsha2 A:20-36,42-58,223-239,247-264,879-883
1lsh d1lsha2 A:20-36,42-58,223-239,247-264,814-837
11. b.1.18 E set domains "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies !
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1jsy d1jsya1 A:51-64,74-86,126-131,138-152,316-330
1cf1 d1cf1b1 B:55-68,78-90,130-134,141-156,322-336
1zsh d1zsha1 A:51-64,74-86,126-132,138-152,316-330
1g4m d1g4mb1 B:61-65,74-87,126-131,137-152,316-331
1g4r d1g4ra1 A:51-64,74-87,126-132,138-152,316-330
1cf1 d1cf1c1 C:55-68,75-90,130-134,141-155,322-337
1cf1 d1cf1a1 A:55-68,75-90,130-134,141-155,322-337
1cf1 d1cf1d1 D:55-68,78-90,130-134,141-158,322-336
1g4m d1g4ma1 A:61-65,74-87,126-132,137-152,316-330
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 293 (enumeration index: query2114.2115) of S5
3a3j A:39-47,48-56,238-249,251-262,281-291
3t81 B:440-447,454-463,469-475,480-487,572-576
3ita B:14-22,23-31,216-227,228-239,258-264
3ita C:14-22,23-31,217-227,228-239,258-263
3ita D:14-22,23-31,216-227,228-239,258-264
3ita A:14-22,23-31,217-227,228-239,258-264
3hwj A:1738-1750,1825-1834,1845-1850,1852-1859,1873-1882
3hwj B:1738-1749,1822-1834,1845-1850,1852-1859,1873-1882
3gc3 A:51-64,74-87,126-130,139-152,316-330
2wkr A:414-420,425-431,487-502,504-517,546-553
2wkr A:414-420,425-431,487-502,504-517,591-602
2fau A:74-80,82-88,120-124,125-130,267-281
3gd1 E:55-64,72-82,126-132,138-149,316-331
3gd1 C:51-64,74-86,126-132,139-152,316-331
3ohg A:144-148,149-154,161-168,186-194,306-313
3ohg A:144-148,149-154,161-168,186-194,217-225
3itb D:14-22,23-31,217-227,228-239,258-264
3itb A:14-22,23-31,217-227,228-239,258-264
3itb C:14-22,23-31,217-227,228-239,258-263
3itb B:14-22,23-31,216-227,228-239,258-264
2y12 Z:220-232,234-244,249-257,300-306,346-355
2y0u Z:221-226,234-244,249-257,300-307,346-355
3mze A:18-26,27-35,221-230,233-243,262-271
3ml4 B:6-14,19-28,76-83,85-91,146-154
3p2d A:52-65,73-87,127-133,139-153,317-332
3p2d B:52-65,75-87,127-133,139-153,317-331
3bs1 A:158-165,169-176,195-200,202-207,225-230
3c9a A:119-128,130-136,270-275,276-281,370-379
3agq A:495-500,508-518,524-531,573-579,619-628
3mfd A:34-42,43-51,228-238,239-248,267-276
2h6s A:2-11,12-22,153-158,165-172,173-177
3pen A:213-222,235-244,250-257,312-319,363-371
3t8l A:440-447,455-463,469-475,480-487,578-583
2y0y Z:220-232,234-244,249-257,300-306,346-355
1suj A:51-63,73-86,123-128,135-148,313-328
3pvq A:40-46,51-58,70-77,79-86,188-193
3pvq B:40-46,51-58,70-77,79-86,188-193
3nqb A:440-447,454-463,469-475,480-487,578-583
3nqb B:440-447,454-463,469-475,480-487,578-583
3it9 B:14-22,23-31,216-227,228-239,258-264
3it9 D:14-22,23-31,217-227,228-239,258-264
3it9 C:14-22,23-31,217-227,228-239,258-264
3it9 A:14-22,23-31,217-227,228-239,258-264
2wkp A:414-420,425-431,487-502,504-517,546-553
3e1y F:440-450,452-461,468-474,514-520,556-560
3e1y E:440-450,452-461,468-474,514-520,556-560
3mzf A:18-26,27-35,221-231,232-243,262-271
2gza C:38-45,47-54,99-107,114-122,221-227
2gza B:38-45,47-54,99-107,114-122,221-227
2gza A:38-45,47-54,99-107,114-122,221-227
2gza A:38-45,47-54,99-107,114-122,204-210
2gza C:38-45,47-54,99-107,114-122,204-210
2gza B:38-45,47-54,99-107,114-122,204-210
2qzx A:2-11,12-21,153-158,165-172,173-177
2qzx B:2-11,12-22,153-158,165-172,173-177
3cw2 F:213-222,235-244,250-264,312-319,363-371
3cw2 B:213-222,235-244,251-256,314-319,363-371
3no8 B:390-399,462-473,484-492,493-504,518-526
3no8 A:390-399,462-473,484-492,493-504,519-526
3mzd A:18-26,27-35,221-231,232-243,262-271
3d6w A:125-133,134-141,162-167,169-174,176-183
3d6w B:125-133,134-141,162-167,169-174,195-202
3d6w A:125-133,134-141,162-167,169-174,195-202
3d6w B:125-133,134-141,162-167,169-174,176-184
2wtr B:51-64,74-86,126-132,138-152,316-331
2wtr A:61-65,74-79,126-132,137-152,316-330
3gbw A:1250-1259,1328-1339,1350-1355,1357-1365,1379-1386
3h41 A:147-154,160-166,178-185,187-194,196-201
2y0w Z:221-226,234-244,249-257,300-307,346-355
2hji A:2-8,15-19,109-118,119-128,129-137
3agj A:233-243,247-256,262-269,309-315,351-359
2h6t A:2-11,12-22,153-158,165-172,173-177
2wkq A:414-420,425-431,487-502,504-517,546-553
2qzw A:2-11,12-21,153-158,165-172,173-177
2qzw B:2-11,12-21,153-158,165-172,173-177
3fv3 H:2-11,12-21,156-161,168-175,176-180
3fv3 A:2-11,12-22,156-161,168-175,176-180
3fv3 B:2-11,12-21,156-161,168-175,176-180
3fv3 G:2-11,12-21,156-161,168-175,176-180
3fv3 E:2-11,12-21,156-161,168-175,176-180
3fv3 D:2-11,12-18,156-161,168-175,176-180
3fv3 C:2-11,12-22,156-161,168-175,176-180
3fv3 F:2-11,12-22,156-161,168-175,176-180